Cla97C02G041450 (gene) Watermelon (97103) v2

Overview
NameCla97C02G041450
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description50S ribosomal protein L27, chloroplastic-like
LocationCla97Chr02 : 29394884 .. 29395531 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGGATGGCTCATCTAGAACAAGTTGGTGTCTGTCATGTTACTTTGACTGCGTATTTGATGATTACAATGTTTGTTGAATCAAATCTCAGATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGGTCAGTGGCAAGGAAACAAATCACGTTGTCTTAAACTAGAACTGAATTTCTATTGATTGAAACTGTTTTGTTGTGAACTTATTTTACGGAGAGTTGTTCCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGCTTATGCAACTACTTCTACTACCAAAGAATTGAAGACAACATGA

mRNA sequence

ATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGCTTATGCAACTACTTCTACTACCAAAGAATTGAAGACAACATGA

Coding sequence (CDS)

ATGCTTAATATTGCGGCCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTGTTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAGTTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAACGTGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTTGAAAAGCACAAGCTGAGCGGACGTAAGTGGGTTCATGTTATTCCAAAGGAAGGGCACGTTCTTCATCCTGCTTATGCAACTACTTCTACTACCAAAGAATTGAAGACAACATGA

Protein sequence

MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHVIPKEGHVLHPAYATTSTTKELKTT
Homology
[Close]
BLAST of Cla97C02G041450 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 286.6 bits (732), Expect = 4.9e-74
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VH+IPKEGHVLHP YATT  + ELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Cla97C02G041450 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 285.4 bits (729), Expect = 1.1e-73
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKTT 148
           VHVIPK+GHVLHP YATTST+ +LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]
BLAST of Cla97C02G041450 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 2.4e-73
Identity = 136/146 (93.15%), Postives = 139/146 (95.21%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VH+IPKEGHVLHP YATT  + ELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Cla97C02G041450 vs. NCBI nr
Match: XP_022157050.1 (uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157052.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157053.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157054.1 uncharacterized protein LOC111023867 [Momordica charantia])

HSP 1 Score: 283.5 bits (724), Expect = 4.1e-73
Identity = 138/147 (93.88%), Postives = 140/147 (95.24%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA  FCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALKEGC+KFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKTT 148
           VHVIPKEGHVLHP YA  ST  ELKTT
Sbjct: 121 VHVIPKEGHVLHPVYA--STASELKTT 145

[Close]
BLAST of Cla97C02G041450 vs. NCBI nr
Match: XP_004139171.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN60919.1 hypothetical protein Csa_2G023860 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 1.9e-70
Identity = 133/146 (91.10%), Postives = 137/146 (93.84%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VHVIPKEGHVLHP Y TTST+ +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

[Close]
BLAST of Cla97C02G041450 vs. TrEMBL
Match: tr|A0A1S4E0A6|A0A1S4E0A6_CUCME (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 7.2e-74
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKTT 148
           VHVIPK+GHVLHP YATTST+ +LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]
BLAST of Cla97C02G041450 vs. TrEMBL
Match: tr|A0A0A0LIQ3|A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.3e-70
Identity = 133/146 (91.10%), Postives = 137/146 (93.84%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIA TFCKRLNVKDLVTNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VHVIPKEGHVLHP Y TTST+ +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

[Close]
BLAST of Cla97C02G041450 vs. TrEMBL
Match: tr|A0A061FDJ8|A0A061FDJ8_THECC (Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.6e-63
Identity = 118/146 (80.82%), Postives = 133/146 (91.10%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VHV PKEGHVLHP Y  T+ ++ELKT
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKT 145

[Close]
BLAST of Cla97C02G041450 vs. TrEMBL
Match: tr|A0A061FCK6|A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.6e-63
Identity = 118/146 (80.82%), Postives = 133/146 (91.10%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG++ GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCVKFE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VHV PKEGHVLHP Y  T+ ++ELKT
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKT 178

[Close]
BLAST of Cla97C02G041450 vs. TrEMBL
Match: tr|A0A1U8KJV9|A0A1U8KJV9_GOSHI (50S ribosomal protein L27-like OS=Gossypium hirsutum OX=3635 GN=LOC107917907 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.7e-63
Identity = 118/146 (80.82%), Postives = 132/146 (90.41%), Query Frame = 0 

Query: 1   MLNIAATFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA TFCKR++VK+LVT+ PV+ + +DG++ GLSL+ RRWA+KKTAGSTKNGRDSKPK
Sbjct: 1   MFNIATTFCKRISVKELVTSAPVFGTITDGSSSGLSLMLRRWASKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTL+ALKEGCVKFE HKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFETHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPAYATTSTTKELKT 147
           VHV PKEGHVLHP YA T+   ELKT
Sbjct: 121 VHVEPKEGHVLHPLYA-TADAGELKT 145

[Close]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match: sp|A9IM57|RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.8e-26
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match: sp|Q6G507|RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-25
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match: sp|B4RZH4|RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVI 125
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match: sp|Q6G0T7|RL27_BARQU (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVI 125
           L  G V F++ K + R +V V+
Sbjct: 62  LSNGVVSFQR-KANNRSYVSVV 82

[Close]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match: sp|A1URM7|RL27_BARBK (50S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) OX=360095 GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPG+ VGIGKDHTLF+
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIIRQRGTRWHPGENVGIGKDHTLFS 61

Query: 103 LKEGCVKFEKHKLSGRKWVHVIP 126
           L  G V F + K++ R +V VIP
Sbjct: 62  LANGTVSF-RTKVNNRSYVSVIP 83

[Close]
BLAST of Cla97C02G041450 vs. TAIR10
Match: AT5G15220.1 (Ribosomal protein L27 family protein)

HSP 1 Score: 220.3 bits (560), Expect = 7.8e-58
Identity = 107/149 (71.81%), Postives = 126/149 (84.56%), Query Frame = 0 

Query: 2   LNIAATFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN AA+ C+R+++++L+T VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPAY--ATTSTTKELKT 147
           W+HV P  GHVLHP Y  A  + + +LKT
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKT 152

[Close]
BLAST of Cla97C02G041450 vs. TAIR10
Match: AT2G16930.2 (Ribosomal protein L27 family protein)

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-57
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 0 

Query: 2   LNIAATFCKRLNVKDLVTNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN AA+ C+R+++++L+T VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPAYATTSTTKELK 146
           W+HV P  GHVLHP Y   +  K  K
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTK 149

[Close]
BLAST of Cla97C02G041450 vs. TAIR10
Match: AT5G40950.1 (ribosomal protein large subunit 27)

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-21
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVKFEKHKLSGRKWVHVIPKE 128
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:
BLAST of Cla97C02G041450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022970580.14.9e-7493.84uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac... [more]
XP_016901663.11.1e-7393.20PREDICTED: 50S ribosomal protein L27-like [Cucumis melo][more]
XP_022964702.12.4e-7393.15uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar... [more]
XP_022157050.14.1e-7393.88uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncha... [more]
XP_004139171.11.9e-7091.10PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN6... [more]
BLAST of Cla97C02G041450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E0A6|A0A1S4E0A6_CUCME7.2e-7493.2050S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1[more]
tr|A0A0A0LIQ3|A0A0A0LIQ3_CUCSA1.3e-7091.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1[more]
tr|A0A061FDJ8|A0A061FDJ8_THECC2.6e-6380.82Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM... [more]
tr|A0A061FCK6|A0A061FCK6_THECC2.6e-6380.82Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=... [more]
tr|A0A1U8KJV9|A0A1U8KJV9_GOSHI5.7e-6380.8250S ribosomal protein L27-like OS=Gossypium hirsutum OX=3635 GN=LOC107917907 PE=... [more]
BLAST of Cla97C02G041450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|A9IM57|RL27_BART19.8e-2671.0850S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)... [more]
sp|Q6G507|RL27_BARHE1.3e-2569.8850S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ... [more]
sp|B4RZH4|RL27_ALTMD1.1e-2467.0750S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11... [more]
sp|Q6G0T7|RL27_BARQU1.8e-2467.0750S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=... [more]
sp|A1URM7|RL27_BARBK4.1e-2466.2750S ribosomal protein L27 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583... [more]
BLAST of Cla97C02G041450 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G15220.17.8e-5871.81Ribosomal protein L27 family protein[more]
AT2G16930.22.3e-5771.23Ribosomal protein L27 family protein[more]
AT5G40950.15.8e-2161.18ribosomal protein large subunit 27[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018261Ribosomal_L27_CS
IPR001684Ribosomal_L27
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G041450.1Cla97C02G041450.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 95..119
score: 47.08
coord: 45..69
score: 63.85
coord: 70..94
score: 57.38
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 43..123
e-value: 3.8E-35
score: 117.8
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 43..123
e-value: 4.1E-37
score: 126.0
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 6..143
IPR001684Ribosomal protein L27PRODOMPD003114coord: 69..125
e-value: 2.0E-21
score: 248.0
IPR001684Ribosomal protein L27HAMAPMF_00539Ribosomal_L27coord: 42..126
score: 25.941
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 61..127
e-value: 2.6E-31
score: 109.1
NoneNo IPR availablePANTHERPTHR15893:SF539S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL-RELATEDcoord: 6..143
NoneNo IPR availableSUPERFAMILYSSF110324Ribosomal L27 protein-likecoord: 43..123
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 75..89

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G041450Cla019898Watermelon (97103) v1wmwmbB316
Cla97C02G041450Csa2G023860Cucumber (Chinese Long) v2cuwmbB118
Cla97C02G041450MELO3C004251Melon (DHL92) v3.5.1mewmbB376
Cla97C02G041450ClCG02G015720Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G041450CSPI02G04040Wild cucumber (PI 183967)cpiwmbB120
Cla97C02G041450Cucsa.091370Cucumber (Gy14) v1cgywmbB100
Cla97C02G041450Lsi11G005570Bottle gourd (USVL1VR-Ls)lsiwmbB087
Cla97C02G041450CsGy2G004140Cucumber (Gy14) v2cgybwmbB114
Cla97C02G041450MELO3C004251.2Melon (DHL92) v3.6.1medwmbB367
Cla97C02G041450CsaV3_2G005370Cucumber (Chinese Long) v3cucwmbB123
Cla97C02G041450BhiUN32G22Wax gourdwgowmbB668
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G041450Silver-seed gourdcarwmbB0746
Cla97C02G041450Cucurbita maxima (Rimu)cmawmbB175
Cla97C02G041450Cucurbita maxima (Rimu)cmawmbB810
Cla97C02G041450Cucurbita moschata (Rifu)cmowmbB161
Cla97C02G041450Cucurbita moschata (Rifu)cmowmbB785