CsGy2G004140 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G004140
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L27-like
Location	Chr2 : 2788673 .. 2791028 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATTAACACAAAGCTTTTTTTTTTTAGTAGATTACATTTCTATCCTAGTTTTTTTGGAGATTAGTGTATCACTGTCATCGTATCTCTACCTTATATCAGTGTCAACACTTTTTAGTTTTCAAATCTAGAAAACATTTTTTTAAATAAATATTTTCACCAAAACCTTGATGAAGGTCTATAGTGATCATGATTTTTTTAGTTTTTCCATTCACTAGTTACACGGGTTTGGATTCATTTCTCACCAAAATTTTTACATTTAGATTAGAATCAGGGAAGTCCCTGTTGACTATGTCAAATGTCATCTCTGTGGTCAAGTTAAATTATTCTATCTTTTTCCTTCAATTTCCATTCATCAATAGATTTGTTAGCAATGGGGAAGGTTTCTAGTATTTGCCTACCGTTATCAAGGTTGATTGAAATTCCATATTAGTGTACAGGAGGAATGAGGATGTATTTGAGTACTTTTAAATGCACTCTACCTGCAATCTTACTTGCATACAGATAAGACTGATAAGTGATAACTGATAGGTTTGTTGTCATTGTCGGATTTGGCATCGCTTTCTTCGATGCAAATTTAAGTTTCATTGAGTCTATCATAAAAGATCAATTTTCAATAAAGTCATGGAACTCTGTCGGGTTAGGTTATGTTCGATGATGCTCTATGAGTTTTTTAGAATTTCAACTGTGTAGAAAACTTATTTTTTCTCTTAACTGGTGACTACTAGCTGTCTTTTCTAGTCAGCTTAGGGCTATTTTTTGCTTTAGTGTAAGATCCACTTCTTGAAAGGAAGTAAGAACCCCCTGTTAGTTTTGAGCTGATTATTAACTTCTGTAAGTTCAGTCTTGATTTCCACTTTCGTAGAACCTTTTTAAGTTCACTGTCATGGAATTAAGGCCCCATTTTGAAAAAAAAAAAACAAAATGGTTATCAAATGTGGCCCAAGTTCTTTTGATTTTTGAAATCCTCCAATTTTGTTGTTTCATAATAGTTAATAGTGTTTTCCATTAAGAAAAGAAATAGATCTAATAATGCCTAGTGATTATTGTATGATAGAACCTAAACAACTAGAACATTGTCCAAATATTATTCTTACTCAACAGTCAAGCCTACAGCCAGAAAACAATGGTATCTTCCTCTCTTCCCACTCTCTCTATATATAATCAATTCTAATAATTTTTACAACTCAAGGGCACAATTCTACAACCTATATAACAACTCCTGTTCAAATAAGTTAGTTACATAATCAATTCAAATTGCCTACTCTTTGGATAATTACTCTTATGAATTTAATAATTATTTTACTTGTTTGGTAAGCAAATTTTTTTCTTCTTTAATTTTATTATATAAATTGTTGTGTGCTTTTGCTAGGCATTGGTTGAAGCATTTGAATGGAAATCTACACTTTCACTTTGGTTTGCAATATCCGTGTCTGTTTCTTGAATTTGAGTTGTTAACCATGAAGGATTTAAATGATGTAACCTTTTGAAAAAGTTGTTGGAGGTTTGTTACAAAGTTTTTCGATATTAATAGTTGGCCATGGCCTGTTATTAGAATATGCAGGTAGCTTCTTGAACTAGATTATGTAATATATGGTAGATTTATATTGGAAGTTGTTCATTTGATCTTGTTGAACTATGTTTTACATGTGTTAAGTATCTTGTGACATTTTCAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGGTAAGAATGGTTCATCCAGAACATGTTGTGTACTTATCATGCTAATTTGTCTTCATATTTTGGTGATTACATTGTTTGTTGAATCTAATCTCAGATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAGGACAAACAAAAATCACATTGTCATAAAACTTGCACTGAAATTTCTATTTATTGAAGCGGTTTTGTTGTTAACTTATTTACGGAGAGTTATTCCTTCTGGATACAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

mRNA sequence

ACAATTAACACAAAGCTTTTTTTTTTTAGTAGATTACATTTCTATCCTAGTTTTTTTGGAGATTAGTGTATCACTGTCATCGTATCTCTACCTTATATCAGTGTCAACACTTTTTAGTTTTCAAATCTAGAAAACATTTTTTTAAATAAATATTTTCACCAAAACCTTGATGAAGGTCTATAGTGATCATGATTTTTTTAGTTTTTCCATTCACTAGTTACACGGGTTTGGATTCATTTCTCACCAAAATTTTTACATTTAGATTAGAATCAGGGAAGTCCCTGTTGACTATGTCAAATGTCATCTCTGTGGTCAAGTTAAATTATTCTATCTTTTTCCTTCAATTTCCATTCATCAATAGATTTGTTAGCAATGGGGAAGGTTTCTAGTATTTGCCTACCGTTATCAAGGTTGATTGAAATTCCATATTAGTGTACAGGAGGAATGAGGATGTATTTGAGTACTTTTAAATGCACTCTACCTGCAATCTTACTTGCATACAGATAAGACTGATAAGTGATAACTGATAGGTTTGTTGTCATTGTCGGATTTGGCATCGCTTTCTTCGATGCAAATTTAAGTTTCATTGAGTCTATCATAAAAGATCAATTTTCAATAAAGTCATGGAACTCTGTCGGGTTAGGTTATGTTCGATGATGCTCTATGAGTTTTTTAGAATTTCAACTGTGTAGAAAACTTATTTTTTCTCTTAACTGGTGACTACTAGCTGTCTTTTCTAGTCAGCTTAGGGCTATTTTTTGCTTTAGTGTAAGATCCACTTCTTGAAAGGAAGTAAGAACCCCCTGTTAGTTTTGAGCTGATTATTAACTTCTGTAAGTTCAGTCTTGATTTCCACTTTCGTAGAACCTTTTTAAGTTCACTGTCATGGAATTAAGGCCCCATTTTGAAAAAAAAAAAACAAAATGGTTATCAAATGTGGCCCAAGTTCTTTTGATTTTTGAAATCCTCCAATTTTGTTGTTTCATAATAGTTAATAGTGTTTTCCATTAAGAAAAGAAATAGATCTAATAATGCCTAGTGATTATTGTATGATAGAACCTAAACAACTAGAACATTGTCCAAATATTATTCTTACTCAACAGTCAAGCCTACAGCCAGAAAACAATGGTATCTTCCTCTCTTCCCACTCTCTCTATATATAATCAATTCTAATAATTTTTACAACTCAAGGGCACAATTCTACAACCTATATAACAACTCCTGTTCAAATAAGTTAGTTACATAATCAATTCAAATTGCCTACTCTTTGGATAATTACTCTTATGAATTTAATAATTATTTTACTTGTTTGGTAAGCAAATTTTTTTCTTCTTTAATTTTATTATATAAATTGTTGTGTGCTTTTGCTAGGCATTGGTTGAAGCATTTGAATGGAAATCTACACTTTCACTTTGGTTTGCAATATCCGTGTCTGTTTCTTGAATTTGAGTTGTTAACCATGAAGGATTTAAATGATGTAACCTTTTGAAAAAGTTGTTGGAGGTTTGTTACAAAGTTTTTCGATATTAATAGTTGGCCATGGCCTGTTATTAGAATATGCAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGGTAAGAATGGTTCATCCAGAACATATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

Coding sequence (CDS)

ATGCAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGGTAAGAATGGTTCATCCAGAACATATGGAGCTACTGCTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACAAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAAGAAGGCAATGTCAAGTTTGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

Protein sequence

MQDKLHIHTTMLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA

Homology

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BLAST of CsGy2G004140 vs. NCBI nr
Match: XP_004139171.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN60919.1 hypothetical protein Csa_2G023860 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 2.6e-76
Identity = 147/156 (94.23%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSFS         GATAGLNLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSD--------GATAGLNLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK
Sbjct: 61  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 148

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BLAST of CsGy2G004140 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 1.1e-71
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSFS         GATAGLNLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSD--------GATAGLNLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK
Sbjct: 61  NGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           +KLSGRKWVHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 HKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTTA 148

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BLAST of CsGy2G004140 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 7.7e-68
Identity = 133/156 (85.26%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSFS         G+  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSD--------GSAGGLSLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK
Sbjct: 61  NGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           +KLSGRKWVH+IPKEGHVLHPVY TT  S +LKTAA
Sbjct: 121 HKLSGRKWVHIIPKEGHVLHPVYATTDISPELKTAA 148

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BLAST of CsGy2G004140 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSF          G+  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFID--------GSAGGLSLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK
Sbjct: 61  NGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTA 166
           +KLSGRKWVH+IPKEGHVLHPVY TT  S +LKTA
Sbjct: 121 HKLSGRKWVHIIPKEGHVLHPVYATTDISPELKTA 147

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BLAST of CsGy2G004140 vs. NCBI nr
Match: XP_022157050.1 (uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157052.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157053.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157054.1 uncharacterized protein LOC111023867 [Momordica charantia])

HSP 1 Score: 256.5 bits (654), Expect = 6.1e-65
Identity = 130/156 (83.33%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIAT FCKRLNVKDLVTNVPVYSSFS         GA  GL+LLFRRWATKKTAGSTK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSD--------GAAVGLSLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALKEG +KFEK
Sbjct: 61  NGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           +KLSGRKWVHVIPKEGHVLHPVY   ST+ +LKT A
Sbjct: 121 HKLSGRKWVHVIPKEGHVLHPVY--ASTASELKTTA 146

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BLAST of CsGy2G004140 vs. TAIR10
Match: AT5G15220.1 (Ribosomal protein L27 family protein)

HSP 1 Score: 224.2 bits (570), Expect = 6.1e-59
Identity = 107/157 (68.15%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 12  LNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTKN 71
           LN A + C+R+++++L+T VP YS      GSS + G+++GL+L+F+RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYS------GSSISDGSSSGLSLVFKRWATKKTAGSTKN 63

Query: 72  GRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKN 131
           GRDSNPK+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+
Sbjct: 64  GRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKS 123

Query: 132 KLSGRKWVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 167
           K++GRKW+HV P  GHVLHP+Y     + S +LKTA+
Sbjct: 124 KITGRKWIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

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BLAST of CsGy2G004140 vs. TAIR10
Match: AT2G16930.2 (Ribosomal protein L27 family protein)

HSP 1 Score: 218.0 bits (554), Expect = 4.4e-57
Identity = 104/157 (66.24%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 12  LNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTKN 71
           LN A + C+R+++++L+T VP Y+      GSS + G+++GL+L+ +RWATKKTAGSTKN
Sbjct: 4   LNSAASICRRVSLRELITEVPAYT------GSSISDGSSSGLSLVLKRWATKKTAGSTKN 63

Query: 72  GRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKN 131
           GRDSNPK+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+
Sbjct: 64  GRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKS 123

Query: 132 KLSGRKWVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 167
           K++GRKW+HV P  GHVLHP+Y     + S +L TA+
Sbjct: 124 KITGRKWIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

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BLAST of CsGy2G004140 vs. TAIR10
Match: AT5G40950.1 (ribosomal protein large subunit 27)

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-20
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 121 LKEGNVKFEKNKLSGRKWVHVIPKE 146
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

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BLAST of CsGy2G004140 vs. Swiss-Prot
Match: sp|A9IM57|RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 121 LKEGNVKFEKNKLSGRKWVHVIP 144
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

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BLAST of CsGy2G004140 vs. Swiss-Prot
Match: sp|Q6G507|RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.2e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 121 LKEGNVKFEKNKLSGRKWVHVIP 144
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

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BLAST of CsGy2G004140 vs. Swiss-Prot
Match: sp|B4RZH4|RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.2e-25
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK  GSTKNGRDS  K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 121 LKEGNVKFEKNKLSGRKWVHVI 143
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

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BLAST of CsGy2G004140 vs. Swiss-Prot
Match: sp|Q8UBR6|RL27_AGRFC (50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.4e-25
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK  GS++NGRDS  K LGVKKFGGE VIPGNII+RQRGT++HPG  VGIGKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIFA 61

Query: 121 LKEGNVKFEKNKLSGRKWVHVIPK 145
           L  GNV F + K +GR +V V PK
Sbjct: 62  LTAGNVNF-RTKANGRVFVSVAPK 84

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BLAST of CsGy2G004140 vs. Swiss-Prot
Match: sp|A6UDV3|RL27_SINMW (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.4e-25
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 61  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 120
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 121 LKEGNVKFEKNKLSGRKWVHVIPK 145
           L  GNV F K K +GR +V V+PK
Sbjct: 62  LTAGNVDFRK-KANGRVYVSVMPK 84

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BLAST of CsGy2G004140 vs. TrEMBL
Match: tr|A0A0A0LIQ3|A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.7e-76
Identity = 147/156 (94.23%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSFS         GATAGLNLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSD--------GATAGLNLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK
Sbjct: 61  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 148

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BLAST of CsGy2G004140 vs. TrEMBL
Match: tr|A0A1S4E0A6|A0A1S4E0A6_CUCME (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 7.6e-72
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 0


Query: 11  MLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGSTK 70
           MLNIATTFCKRLNVKDLVTNVPVYSSFS         GATAGLNLLFRRWATKKTAGSTK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSD--------GATAGLNLLFRRWATKKTAGSTK 60

Query: 71  NGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 130
           NGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK
Sbjct: 61  NGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK 120

Query: 131 NKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA 167
           +KLSGRKWVHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 HKLSGRKWVHVIPKDGHVLHPVYATTSTSPQLKTTA 148

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BLAST of CsGy2G004140 vs. TrEMBL
Match: tr|A0A061FCK6|A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.7e-60
Identity = 119/161 (73.91%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 5   LHIHTTMLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKK 64
           LH +T M NIA TFCKR++VK+LVT+ PVY S         T G+++GL+L+F+RWATKK
Sbjct: 28  LHFNTDMFNIAKTFCKRVSVKELVTSAPVYGSI--------TDGSSSGLSLMFKRWATKK 87

Query: 65  TAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG 124
           TAGSTKNGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEG
Sbjct: 88  TAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEG 147

Query: 125 NVKFEKNKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTA 166
            VKFE  KLSGRKWVHV PKEGHVLHPVY  T+ S +LKTA
Sbjct: 148 CVKFETRKLSGRKWVHVEPKEGHVLHPVY-VTAASEELKTA 179

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BLAST of CsGy2G004140 vs. TrEMBL
Match: tr|A0A2H5NSY8|A0A2H5NSY8_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_071860 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-58
Identity = 117/160 (73.12%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 10  TMLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGST 69
           +M N A T CKRLNVK+LV+NV VY S +         G+  GL+L+FRRWATKKTAGST
Sbjct: 2   SMFNFANTLCKRLNVKELVSNVSVYGSVAD--------GSAGGLSLMFRRWATKKTAGST 61

Query: 70  KNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFE 129
           KNGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFE
Sbjct: 62  KNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 121

Query: 130 KNKLSGRKWVHVIPKEGHVLHPVY---ETTSTSLQLKTAA 167
           K+KLSGRKWVHV PKEGHVLHP+Y      ++S QL+TAA
Sbjct: 122 KHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 153

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BLAST of CsGy2G004140 vs. TrEMBL
Match: tr|V4SKH7|V4SKH7_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002763mg PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-58
Identity = 117/160 (73.12%), Postives = 131/160 (81.88%), Query Frame = 0


Query: 10  TMLNIATTFCKRLNVKDLVTNVPVYSSFSGKNGSSRTYGATAGLNLLFRRWATKKTAGST 69
           +M N A T CKRLNVK+LV+NV VY S +         G+  GL+L+FRRWATKKTAGST
Sbjct: 2   SMFNFANTLCKRLNVKELVSNVSVYGSVAD--------GSAGGLSLMFRRWATKKTAGST 61

Query: 70  KNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFE 129
           KNGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKDHTL+ALKEG VKFE
Sbjct: 62  KNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 121

Query: 130 KNKLSGRKWVHVIPKEGHVLHPVY---ETTSTSLQLKTAA 167
           K+KLSGRKWVHV PKEGHVLHP+Y      ++S QL+TAA
Sbjct: 122 KHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 153

The following BLAST results are available for this feature:

BLAST of CsGy2G004140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139171.1	2.6e-76	94.23	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN6...	[more]
XP_016901663.1	1.1e-71	89.74	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]	[more]
XP_022970580.1	7.7e-68	85.26	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_022964702.1	1.1e-66	84.52	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
XP_022157050.1	6.1e-65	83.33	uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncha...	[more]

BLAST of CsGy2G004140 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15220.1	6.1e-59	68.15	Ribosomal protein L27 family protein	[more]
AT2G16930.2	4.4e-57	66.24	Ribosomal protein L27 family protein	[more]
AT5G40950.1	3.3e-20	61.18	ribosomal protein large subunit 27	[more]

BLAST of CsGy2G004140 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A9IM57\|RL27_BART1	1.1e-25	71.08	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
sp\|Q6G507\|RL27_BARHE	4.2e-25	69.88	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
sp\|B4RZH4\|RL27_ALTMD	7.2e-25	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
sp\|Q8UBR6\|RL27_AGRFC	9.4e-25	67.86	50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=1...	[more]
sp\|A6UDV3\|RL27_SINMW	9.4e-25	67.86	50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=...	[more]

BLAST of CsGy2G004140 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LIQ3\|A0A0A0LIQ3_CUCSA	1.7e-76	94.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1	[more]
tr\|A0A1S4E0A6\|A0A1S4E0A6_CUCME	7.6e-72	89.74	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
tr\|A0A061FCK6\|A0A061FCK6_THECC	8.7e-60	73.91	Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=...	[more]
tr\|A0A2H5NSY8\|A0A2H5NSY8_CITUN	2.8e-58	73.13	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_071860 PE=3 SV=1	[more]
tr\|V4SKH7\|V4SKH7_9ROSI	2.8e-58	73.13	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002763mg PE=3 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR018261	Ribosomal_L27_CS
IPR001684	Ribosomal_L27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G004140.1	CsGy2G004140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 63..87 score: 65.23 coord: 88..112 score: 57.38 coord: 113..137 score: 46.77
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 61..141 e-value: 2.4E-37 score: 126.7
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 61..141 e-value: 8.2E-35 score: 116.7
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 16..163
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 87..143 e-value: 1.0E-22 score: 261.0
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 60..144 score: 26.385
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 79..145 e-value: 7.1E-31 score: 107.7
None	No IPR available	PANTHER	PTHR15893:SF5	39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL-RELATED	coord: 16..163
None	No IPR available	SUPERFAMILY	SSF110324	Ribosomal L27 protein-like	coord: 61..141
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 93..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy2G004140	Cla019898	Watermelon (97103) v1	cgybwmB140
CsGy2G004140	Csa2G023860	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G004140	MELO3C004251	Melon (DHL92) v3.5.1	cgybmeB120
CsGy2G004140	CSPI02G04040	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G004140	Lsi11G005570	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G004140	MELO3C004251.2	Melon (DHL92) v3.6.1	cgybmedB118
CsGy2G004140	CsaV3_2G005370	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G004140	Cla97C02G041450	Watermelon (97103) v2	cgybwmbB114
CsGy2G004140	BhiUN32G22	Wax gourd	cgybwgoB208

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G004140	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G004140	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G004140	Cucurbita maxima (Rimu)	cgybcmaB253
CsGy2G004140	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G004140	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G004140	Cucurbita moschata (Rifu)	cgybcmoB242
CsGy2G004140	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G004140	Cucurbita pepo (Zucchini)	cgybcpeB271
CsGy2G004140	Watermelon (Charleston Gray)	cgybwcgB119
CsGy2G004140	Silver-seed gourd	carcgybB0713
CsGy2G004140	Wax gourd	cgybwgoB124