BhiUN32G22 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN32G22
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	50S ribosomal protein L27-like
Location	Contig32 : 425712 .. 429191 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACTTTTAAACTTCTTTTTAAATAAAAGAAACATAAATTACAATTAAAAATTAAAAAACCCTAGCAATCGCCGTTCTTCATCTTCTGATCTGCGATTGACGAACGGCCACCACCACCGTCCTCCTTCGTTTGGCGCTTCACGAACGGCCACCACTCCCCCGCGGCGACTGACAAACAACAACAACAACTCTAGCTTCGCCGCCACCGTTCGAGGTTTGTCTTTTTTTTTTTTTTTTTTTTTTTCCTTCCCTCTTTCCAAATTTCCATAACTTATTAGTTTCAACTTTTATATTCAAGTTGAAGTTAAATTTAAGTTAGATTTAGAAATATGGAACTAGCAATATAACAATCAGCGCAGAGTTTTTTACTTCCAAAATTATTAGGTAATGTTTATTTCCAGTGTTTGTGTTGTATATTGTTCCAGTGTCAATGAATTTGCATTTCTATCCTCAACGTATTCATATCTTACAAATTATTGTTTCAATGTTATTGTATCCATCCCCCGTATCTGTGTCAATGCTGGTTAGTTTTCAAGTCAAGATAACATTTCTTAAAATAAATATCTTCACCTTCTTAGGAATCATTCATCTAAATGATCGTTTAGGAGAATTTAGGTCACAAGGCACAAAGACGAGTTTCTCACCCTGTATCCTTCTATGAATCATGAGATTCCCCATGAGAGATGAGCCTGCATAGATAATTGGCTACCATGATTAAGGGAGAAAAAAAAACCATCTTGATTAAGGCCTCTGGAGACCATGATTTTTAGTTTTTCTAATAATGATAGGGAAAGTTTCTCCATTTCTTACGAAAACCTGTTACATTTAGATTAGAATCTGGGAAGACCCTGTTGACTTTCTCAAGAGACTTCTTGTGGTCAAGTTTAATTATTCCTTCCATTTTCTTCAATTTCTTACCAAAACCTGTTACATTTAGATTTGGTATCTGCTTTCTTGGGAATAGTGTGAACTTAAGTCGCATTGAGGCTAGCATAAAAGATCTATTTTTCAAAGAAGTAGTTGAACTCAGTCGTAAGGTTGTTTTTAATGATGTTGCATGAGTTTTTTAAAACTTCGACTGTGCAGAAAACTTATTTGCCCTTTAAGTGGTGACTGCTTGCTGTATTTTCTGCTCAGTGTAGAGCTCTTTTTTTTCTTGTGTGAGATCCAATGCATATTCTTGAAAGGAAGCAAGAAATCCCAATTTAGCGTCGAGCTGATTATGAAACTCTACTAATTCAGTCTGCATTTCCACTGTCATGGAATCACCAAGGCACCATTTTGAAAAAAAAAAAAAATAGTTATCAAATACGGCCTAAGTAATTTTGATTTTTGAAATTCTCCATTTTTGTTGGTACTTAATAATTTATATGAATTGGTATGCACTCTTGTGGGATTGACTTAAGCATTTGAATGGAGAAATCTTTTTGACACATCCATATTGGTTTGCAATATCCTTTTTTTATTGTTTGGTTGTGGGGGGTGGTTAAAAATGACGATTTTCATTGAGAAAAAATGTAAGGATATAAAAAAAACCAAGCCCACGAAAGATAGAAGAATCCCACTAAGGAAGGTATACCAACTAAACCAAATCGAACCTATAGAATAATTACAAAAAGTCTTCAAACTAAAGCCTAAAGAGAGACATGATATACAACAAGGGACCGACCATACATCAAAGAGTCTATCTCTAACCCCTGAAACATCCCCACCCCTCGCGAAGGACCCAAAGAAAGCACACACCTTGGCCAGCCATGAAAAAATGCCCCTCTTGAAAAGGCAGATGGAGGAGGAACTTCCCGATCATATCACTAGTAACCCTATGACGAGCATGCAAAAAACCAAACATTTAGAAGAAATAATCTCACACTGCCCTTGCAAACTTACAATGTCAGAGAATATGATCCAAGTCTTCCTCCACTTTCTAACAAAAGATACAACAAAGTGGACCAACAAGCGAAGGCAAACTTCCTCACAACGATCCATAGTGGATTAAACGATGCAATGTTAACTATGAAGGATTAAACGAAGCAATCTTTTGAAAAACTACTTGCATGTTCATCGTGAAGTGTTTTGTAAGATGTAAATAGTAGGCCTATTATTAGAATATGCTGATTTGAGCTTGTTGAACCAGATTATGTTATGGTGGTTTTATATTGAAATTTGTTCATTTGATCTTGTTGAACAAAACTATGTTTTACATTTCCGAAGTGTCTTGTGACATATTTCCAGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGTTTTGCAAGCGGCTGAATGTCAAGGATTTGGTGACCACTGTTCCTGTATATAGCAGTTTTAGTGGTAAGATTGTTCATCTAGAGCAAGTTGTGCTTGTCATGTTACTTTGACTGCATATTTGATGATTACAATGTTTGTTGGATTGAATCTCAGATGGAGCTGCTACTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAAGAAAACAAACGACATTGCCATAAACTAGAACTAAAATTTGTATTGATTGAAACTGTTTTGTTGTGAACTTATTTCACGGAGAGATGTTCCTTCTGGATACAGAGAGTTACTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATGGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAATTTCGAAAAGCACAAGCTGAGTGGACGTAAGTGGGTGCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTATTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACAACATGATTTTTGAGACCGTTGATGAACATGATCATGAATGGTATAAATTTTCCTGTAGTTTTTCACGGTCCACAACAAATTCGGACTAAAATCGATCACCTCGGGAGGGGGAGTAAGCAGTCTCGTTGAGGGGCATGTTTTTAATGTTTCTAATTTCCTTTTCTTGGAAAGCCTATCGTATTTCACTTTGGCTATTCTGCAGACGATGATGTCCGCTCCTAGCTTGTTGCAATTCACAAAAGAGAAATTTCCTTTGTAATTAAATTGCATCCTTTAAGTAAGTCGAGGTGCACTGGAGTACTTCGAGTGAATTTGAGGTCCTCTTTAAACCTCCTCCCCTACCTGAAAATTGTTTGAGGGATATTTTCTTAATTGACATTTCAGTATGTATTTGCCTGAGAATGTGTATCATCTCTGGACTGTTGGTTGGCGTTTCAGGAGAAGTGATGCGAAGAAAAAAAAAAGTAATATTATTAAATTGAAAAAGATAAATACATATAGCTAGTTTAGGCAAGTAATTAGCTTGTAATTATCTCATTCTTTACTTCTGTTGTAATTGTATTTCGGGGCAATAATTAGGTGCA

mRNA sequence

CTACTTTTAAACTTCTTTTTAAATAAAAGAAACATAAATTACAATTAAAAATTAAAAAACCCTAGCAATCGCCGTTCTTCATCTTCTGATCTGCGATTGACGAACGGCCACCACCACCGTCCTCCTTCGTTTGGCGCTTCACGAACGGCCACCACTCCCCCGCGGCGACTGACAAACAACAACAACAACTCTAGCTTCGCCGCCACCGTTCGAGGATAAACTACGTATACAATCATGCTTAATATTGCGACCACGTTTTGCAAGCGGCTGAATGTCAAGGATTTGGTGACCACTGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTACTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTACTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATGGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAATTTCGAAAAGCACAAGCTGAGTGGACGTAAGTGGGTGCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTATTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACAACATGATTTTTGAGACCGTTGATGAACATGATCATGAATGGTATAAATTTTCCTGTAGTTTTTCACGGTCCACAACAAATTCGGACTAAAATCGATCACCTCGGGAGGGGGAGTAAGCAGTCTCGTTGAGGGGCATGTTTTTAATGTTTCTAATTTCCTTTTCTTGGAAAGCCTATCGTATTTCACTTTGGCTATTCTGCAGACGATGATGTCCGCTCCTAGCTTGTTGCAATTCACAAAAGAGAAATTTCCTTTGTAATTAAATTGCATCCTTTAAGTAAGTCGAGGTGCACTGGAGTACTTCGAGTGAATTTGAGGTCCTCTTTAAACCTCCTCCCCTACCTGAAAATTGTTTGAGGGATATTTTCTTAATTGACATTTCAGTATGTATTTGCCTGAGAATGTGTATCATCTCTGGACTGTTGGTTGGCGTTTCAGGAGAAGTGATGCGAAGAAAAAAAAAAGTAATATTATTAAATTGAAAAAGATAAATACATATAGCTAGTTTAGGCAAGTAATTAGCTTGTAATTATCTCATTCTTTACTTCTGTTGTAATTGTATTTCGGGGCAATAATTAGGTGCA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACGTTTTGCAAGCGGCTGAATGTCAAGGATTTGGTGACCACTGTTCCTGTATATAGCAGTTTTAGTGATGGAGCTGCTACTGGATTAAGCTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTACTCCTGGTAACATTATCGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATGGGGAAGGATCACACTCTTTTTGCCCTGAAAGAAGGCTGTGTCAATTTCGAAAAGCACAAGCTGAGTGGACGTAAGTGGGTGCATGTTATACCGAAGGAAGGGCACGTTCTTCATCCTATTTATGCAACTACTTCTACTTCCCCAGAATTGAAGACAACAACATGA

Protein sequence

MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKWVHVIPKEGHVLHPIYATTSTSPELKTTT

Homology

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BLAST of BhiUN32G22 vs. TAIR10
Match: AT5G15220.1 (Ribosomal protein L27 family protein)

HSP 1 Score: 217.2 bits (552), Expect = 6.6e-57
Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTTVPVY--SSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRK 121
           K LGVKKFGGE V PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPIY--ATTSTSPELKTTT 149
           W+HV P  GHVLHPIY  A  + S +LKT +
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

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BLAST of BhiUN32G22 vs. TAIR10
Match: AT2G16930.2 (Ribosomal protein L27 family protein)

HSP 1 Score: 213.4 bits (542), Expect = 9.6e-56
Identity = 102/149 (68.46%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTTVPVY--SSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRK 121
           K LGVKKFGGE V PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPIYATTSTSPELKTTT 149
           W+HV P  GHVLHPIY   + +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

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BLAST of BhiUN32G22 vs. TAIR10
Match: AT5G40950.1 (ribosomal protein large subunit 27)

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VG+GKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVNFEKHKLSGRKWVHVIPKE 128
           L +G V FEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

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BLAST of BhiUN32G22 vs. Swiss-Prot
Match: sp|A9IM57|RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE V  GNIIVRQRGTR+HPGD VG+GKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVNFEKHKLSGRKWVHVIP 126
           L EG V+F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

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BLAST of BhiUN32G22 vs. Swiss-Prot
Match: sp|Q6G507|RL27_BARHE (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-24
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE V  GNIIVRQRGTR+HPGD VG+GKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVNFEKHKLSGRKWVHVIP 126
           L +G V+F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

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BLAST of BhiUN32G22 vs. Swiss-Prot
Match: sp|Q2GCN3|RL27_NEOSM (50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyayama) OX=222891 GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.1e-24
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           ATKK  GS+ NGRDS  K LGVKKFG ERV PG+IIVRQRGT+FHPG  VGMG DHT+FA
Sbjct: 2   ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFA 61

Query: 103 LKEGCVNFEKHKLSGRKWVHVI 125
           +K G V+F    L GR++VHV+
Sbjct: 62  MKSGSVSFSV-GLRGRRFVHVV 82

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BLAST of BhiUN32G22 vs. Swiss-Prot
Match: sp|B4RZH4|RL27_ALTMD (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 9.2e-24
Identity = 54/82 (65.85%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V  GNIIVRQRGTRFH GD +G+GKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVNFEKHKLSGRKWVHVI 125
           LK+G V F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

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BLAST of BhiUN32G22 vs. Swiss-Prot
Match: sp|A6UDV3|RL27_SINMW (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=rpmA PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE V  GNIIVRQRGT++HPG  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 103 LKEGCVNFEKHKLSGRKWVHVIPK 127
           L  G V+F K K +GR +V V+PK
Sbjct: 62  LTAGNVDFRK-KANGRVYVSVMPK 84

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BLAST of BhiUN32G22 vs. TrEMBL
Match: tr|A0A1S4E0A6|A0A1S4E0A6_CUCME (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.1e-73
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTT 148
           VHVIPK+GHVLHP+YATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

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BLAST of BhiUN32G22 vs. TrEMBL
Match: tr|A0A0A0LIQ3|A0A0A0LIQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.1e-69
Identity = 131/146 (89.73%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
            LGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKT 147
           VHVIPKEGHVLHP+Y TTSTS +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

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BLAST of BhiUN32G22 vs. TrEMBL
Match: tr|A0A061FDJ8|A0A061FDJ8_THECC (Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 1   MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPG+YVGMGKDHTL+ALKEGCV FE  KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 149
           VHV PKEGHVLHP+Y  T+ S ELKT T
Sbjct: 121 VHVEPKEGHVLHPVY-VTAASEELKTAT 147

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BLAST of BhiUN32G22 vs. TrEMBL
Match: tr|A0A061FCK6|A0A061FCK6_THECC (Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_034043 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.0e-63
Identity = 119/148 (80.41%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIA TFCKR++VK+LVT+ PVY S +DG+++GLSL+F+RWATKKTAGSTKNGRDSKPK
Sbjct: 34  MFNIAKTFCKRVSVKELVTSAPVYGSITDGSSSGLSLMFKRWATKKTAGSTKNGRDSKPK 93

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPG+YVGMGKDHTL+ALKEGCV FE  KLSGRKW
Sbjct: 94  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKDHTLYALKEGCVKFETRKLSGRKW 153

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 149
           VHV PKEGHVLHP+Y  T+ S ELKT T
Sbjct: 154 VHVEPKEGHVLHPVY-VTAASEELKTAT 180

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BLAST of BhiUN32G22 vs. TrEMBL
Match: tr|A0A1U8KJV9|A0A1U8KJV9_GOSHI (50S ribosomal protein L27-like OS=Gossypium hirsutum OX=3635 GN=LOC107917907 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.7e-63
Identity = 117/148 (79.05%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           M NIATTFCKR++VK+LVT+ PV+ + +DG+++GLSL+ RRWA+KKTAGSTKNGRDSKPK
Sbjct: 1   MFNIATTFCKRISVKELVTSAPVFGTITDGSSSGLSLMLRRWASKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPG+YVG+GKDHTL+ALKEGCV FE HKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFETHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 149
           VHV PKEGHVLHP+YAT     ELKT T
Sbjct: 121 VHVEPKEGHVLHPLYATADAG-ELKTAT 147

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BLAST of BhiUN32G22 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 285.8 bits (730), Expect = 8.3e-74
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKT 147
           VH+IPKEGHVLHP+YATT  SPELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

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BLAST of BhiUN32G22 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.6 bits (727), Expect = 1.9e-73
Identity = 136/148 (91.89%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 149
           VH+IPKEGHVLHP+YATT  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

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BLAST of BhiUN32G22 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 3.2e-73
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTT 148
           VHVIPK+GHVLHP+YATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

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BLAST of BhiUN32G22 vs. NCBI nr
Match: XP_022157050.1 (uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157052.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157053.1 uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157054.1 uncharacterized protein LOC111023867 [Momordica charantia])

HSP 1 Score: 276.6 bits (706), Expect = 5.1e-71
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIAT FCKRLNVKDLVT VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPG+YVG+GKDHTLFALKEGC+ FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKTT 148
           VHVIPKEGHVLHP+YA  ST+ ELKTT
Sbjct: 121 VHVIPKEGHVLHPVYA--STASELKTT 145

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BLAST of BhiUN32G22 vs. NCBI nr
Match: XP_004139171.1 (PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN60919.1 hypothetical protein Csa_2G023860 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 4.7e-69
Identity = 131/146 (89.73%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120
            LGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEK+KLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPIYATTSTSPELKT 147
           VHVIPKEGHVLHP+Y TTSTS +LKT
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 146

The following BLAST results are available for this feature:

BLAST of BhiUN32G22 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15220.1	6.6e-57	70.20	Ribosomal protein L27 family protein	[more]
AT2G16930.2	9.6e-56	68.46	Ribosomal protein L27 family protein	[more]
AT5G40950.1	3.8e-20	58.82	ribosomal protein large subunit 27	[more]

BLAST of BhiUN32G22 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A9IM57\|RL27_BART1	1.1e-24	68.67	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
sp\|Q6G507\|RL27_BARHE	1.4e-24	67.47	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
sp\|Q2GCN3\|RL27_NEOSM	7.1e-24	67.07	50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyaya...	[more]
sp\|B4RZH4\|RL27_ALTMD	9.2e-24	65.85	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
sp\|A6UDV3\|RL27_SINMW	1.6e-23	65.48	50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=...	[more]

BLAST of BhiUN32G22 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0A6\|A0A1S4E0A6_CUCME	2.1e-73	92.52	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
tr\|A0A0A0LIQ3\|A0A0A0LIQ3_CUCSA	3.1e-69	89.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1	[more]
tr\|A0A061FDJ8\|A0A061FDJ8_THECC	2.0e-63	80.41	Ribosomal protein L27 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM...	[more]
tr\|A0A061FCK6\|A0A061FCK6_THECC	2.0e-63	80.41	Ribosomal protein L27 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=...	[more]
tr\|A0A1U8KJV9\|A0A1U8KJV9_GOSHI	5.7e-63	79.05	50S ribosomal protein L27-like OS=Gossypium hirsutum OX=3635 GN=LOC107917907 PE=...	[more]

BLAST of BhiUN32G22 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022970580.1	8.3e-74	93.15	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_022964702.1	1.9e-73	91.89	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
XP_016901663.1	3.2e-73	92.52	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo]	[more]
XP_022157050.1	5.1e-71	91.16	uncharacterized protein LOC111023867 [Momordica charantia] >XP_022157051.1 uncha...	[more]
XP_004139171.1	4.7e-69	89.73	PREDICTED: 50S ribosomal protein L27, chloroplastic-like [Cucumis sativus] >KGN6...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018261	Ribosomal_L27_CS
IPR001684	Ribosomal_L27

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN32M22	BhiUN32M22	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 70..94 score: 58.77 coord: 95..119 score: 45.69 coord: 45..69 score: 63.85
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..123 e-value: 3.2E-37 score: 126.3
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..123 e-value: 2.8E-35 score: 118.2
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 6..141
IPR001684	Ribosomal protein L27	PRODOM	PD003114		coord: 69..125 e-value: 7.0E-22 score: 252.0
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 26.108
None	No IPR available	GENE3D	G3DSA:2.40.50.100		coord: 61..127 e-value: 2.9E-31 score: 109.0
None	No IPR available	PANTHER	PTHR15893:SF5	39S RIBOSOMAL PROTEIN L27, MITOCHONDRIAL-RELATED	coord: 6..141
None	No IPR available	SUPERFAMILY	SSF110324	Ribosomal L27 protein-like	coord: 43..123
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN32G22	Csa2G023860	Cucumber (Chinese Long) v2	cuwgoB217
BhiUN32G22	MELO3C004251	Melon (DHL92) v3.5.1	mewgoB497
BhiUN32G22	ClCG02G015720	Watermelon (Charleston Gray)	wcgwgoB324
BhiUN32G22	CSPI02G04040	Wild cucumber (PI 183967)	cpiwgoB217
BhiUN32G22	Lsi11G005570	Bottle gourd (USVL1VR-Ls)	lsiwgoB146
BhiUN32G22	CsGy2G004140	Cucumber (Gy14) v2	cgybwgoB208
BhiUN32G22	MELO3C004251.2	Melon (DHL92) v3.6.1	medwgoB497
BhiUN32G22	CsaV3_2G005370	Cucumber (Chinese Long) v3	cucwgoB222
BhiUN32G22	Cla019898	Watermelon (97103) v1	wgowmB692
BhiUN32G22	Cla97C02G041450	Watermelon (97103) v2	wgowmbB668

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None