Csa1G690160 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G690160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein RALF-like 11; contains IPR008801 (Rapid ALkalinization Factor)
LocationChr1 : 27606535 .. 27606741 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCATGGTTGATATGTGTGGTGTTTATTAGCATGTTGGTGATGAGCCAAGAAGTTGGAGCACAGACAAACCATCTTAAATTTCCTAATCCATGCGATCTTCCTTCTCCACCTCCAAGTTGTTCGTCAAAAGTTAAAGATCATGCTCCTACTAATCCCTATGATAGAGGTTGCTCTGCAATTCATCGATGTCGTGGAGATTGA

mRNA sequence

ATGAAGTCATGGTTGATATGTGTGGTGTTTATTAGCATGTTGGTGATGAGCCAAGAAGTTGGAGCACAGACAAACCATCTTAAATTTCCTAATCCATGCGATCTTCCTTCTCCACCTCCAAGTTGTTCGTCAAAAGTTAAAGATCATGCTCCTACTAATCCCTATGATAGAGGTTGCTCTGCAATTCATCGATGTCGTGGAGATTGA

Coding sequence (CDS)

ATGAAGTCATGGTTGATATGTGTGGTGTTTATTAGCATGTTGGTGATGAGCCAAGAAGTTGGAGCACAGACAAACCATCTTAAATTTCCTAATCCATGCGATCTTCCTTCTCCACCTCCAAGTTGTTCGTCAAAAGTTAAAGATCATGCTCCTACTAATCCCTATGATAGAGGTTGCTCTGCAATTCATCGATGTCGTGGAGATTGA

Protein sequence

MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCSAIHRCRGD*
Homology
[Close]
BLAST of Csa1G690160 vs. Swiss-Prot
Match: RLF11_ARATH (Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-09
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+WLIC++ I   V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWLICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. Swiss-Prot
Match: RLF13_ARATH (Protein RALF-like 13 OS=Arabidopsis thaliana GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.8e-09
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+IC++ I   V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. Swiss-Prot
Match: RLF12_ARATH (Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.3e-08
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+I ++ I  +V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. Swiss-Prot
Match: RLF10_ARATH (Protein RALF-like 10 OS=Arabidopsis thaliana GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-06
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSC---SSKVKDHAPTNPY 60
          MK+ +IC++ I   V++  V ++  HL +     C  P+PPP C    ++ K+  P N Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS I RC+ D
Sbjct: 61 RRGCSKITRCKRD 73

[Close]
BLAST of Csa1G690160 vs. TrEMBL
Match: A0A0A0M0X3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.1e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AIHRCRGD 69
          AIHRCRGD
Sbjct: 61 AIHRCRGD 68

[Close]
BLAST of Csa1G690160 vs. TrEMBL
Match: A0A0A0LI94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C ++ K     NPY+R CS
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE-EANPYNRDCS 60

Query: 61 AIHRCRG 68
          AI+RCRG
Sbjct: 61 AINRCRG 66

[Close]
BLAST of Csa1G690160 vs. TrEMBL
Match: A0A0A0LZK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLIC   +SMLVMS EV A+   L F + C  PSPP SC    +  +P  PYDRGCS
Sbjct: 34 MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPI-PYDRGCS 93

Query: 61 AIHRCRG 68
           I RCRG
Sbjct: 94 PILRCRG 99

[Close]
BLAST of Csa1G690160 vs. TrEMBL
Match: B2Y4P5_ARAHH (Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis halleri subsp. halleri GN=7C17.2 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-07
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+IC++ I  +V+++ V ++  ++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVICLLVICAVVIAEPVESR-EYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. TrEMBL
Match: D7L1Y5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_900340 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-07
Identity = 29/73 (39.73%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+IC++ I  +V+++ V ++  ++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVICLLVICAVVIAEPVESR-EYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. TAIR10
Match: AT2G19030.1 (AT2G19030.1 ralf-like 11)

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+WLIC++ I   V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWLICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. TAIR10
Match: AT2G19045.1 (AT2G19045.1 RALF-like 13)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-10
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+IC++ I   V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. TAIR10
Match: AT2G19040.1 (AT2G19040.1 RALF-like 12)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-09
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+W+I ++ I  +V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

[Close]
BLAST of Csa1G690160 vs. TAIR10
Match: AT2G19020.1 (AT2G19020.1 ralf-like 10)

HSP 1 Score: 51.2 bits (121), Expect = 2.9e-07
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSC---SSKVKDHAPTNPY 60
          MK+ +IC++ I   V++  V ++  HL +     C  P+PPP C    ++ K+  P N Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS I RC+ D
Sbjct: 61 RRGCSKITRCKRD 73

[Close]
BLAST of Csa1G690160 vs. NCBI nr
Match: gi|700211681|gb|KGN66777.1| (hypothetical protein Csa_1G690160 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 4.5e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AIHRCRGD 69
          AIHRCRGD
Sbjct: 61 AIHRCRGD 68

[Close]
BLAST of Csa1G690160 vs. NCBI nr
Match: gi|700206506|gb|KGN61625.1| (hypothetical protein Csa_2G191310 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-16
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C ++ K     NPY+R CS
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE-EANPYNRDCS 60

Query: 61 AIHRCRG 68
          AI+RCRG
Sbjct: 61 AINRCRG 66

[Close]
BLAST of Csa1G690160 vs. NCBI nr
Match: gi|659102875|ref|XP_008452361.1| (PREDICTED: uncharacterized protein LOC103493422 [Cucumis melo])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRG 59
          MKSWLIC+  I MLV+ QEV A+T HLKF +PC+ PSPPP+C SK +     N YDRG
Sbjct: 1  MKSWLICLALIGMLVVGQEVTAETKHLKFLDPCNQPSPPPTC-SKTEKREEANSYDRG 57

[Close]
BLAST of Csa1G690160 vs. NCBI nr
Match: gi|700211353|gb|KGN66449.1| (hypothetical protein Csa_1G610770 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-11
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60
          MKSWLIC   +SMLVMS EV A+   L F + C  PSPP SC    +  +P  PYDRGCS
Sbjct: 34 MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPI-PYDRGCS 93

Query: 61 AIHRCRG 68
           I RCRG
Sbjct: 94 PILRCRG 99

[Close]
BLAST of Csa1G690160 vs. NCBI nr
Match: gi|15224701|ref|NP_179493.1| (protein RALF-like 11 [Arabidopsis thaliana])

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFP--NPCDLPSPPPSCS---SKVKDHAPTNPY 60
          MK+WLIC++ I   V+++ V ++ N++++   N C  P+PPP C+   ++ K+  P N Y
Sbjct: 1  MKAWLICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCSAIHRCRGD 69
           RGCS IHRCR D
Sbjct: 61 SRGCSKIHRCRRD 72

The following BLAST results are available for this feature:
BLAST of Csa1G690160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RLF11_ARATH1.0e-0942.47Protein RALF-like 11 OS=Arabidopsis thaliana GN=RALFL11 PE=3 SV=1[more]
RLF13_ARATH3.8e-0941.10Protein RALF-like 13 OS=Arabidopsis thaliana GN=RALFL13 PE=3 SV=1[more]
RLF12_ARATH3.3e-0839.73Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1[more]
RLF10_ARATH5.2e-0636.99Protein RALF-like 10 OS=Arabidopsis thaliana GN=RALFL10 PE=2 SV=1[more]
BLAST of Csa1G690160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0X3_CUCSA3.1e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690160 PE=4 SV=1[more]
A0A0A0LI94_CUCSA6.6e-1661.19Uncharacterized protein OS=Cucumis sativus GN=Csa_2G191310 PE=4 SV=1[more]
A0A0A0LZK3_CUCSA1.7e-1156.72Uncharacterized protein OS=Cucumis sativus GN=Csa_1G610770 PE=4 SV=1[more]
B2Y4P5_ARAHH7.3e-0739.73Putative rapid alkalinization factor (RALF) family protein OS=Arabidopsis haller... [more]
D7L1Y5_ARALL7.3e-0739.73Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
BLAST of Csa1G690160 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19030.15.7e-1142.47 ralf-like 11[more]
AT2G19045.12.2e-1041.10 RALF-like 13[more]
AT2G19040.11.8e-0939.73 RALF-like 12[more]
AT2G19020.12.9e-0736.99 ralf-like 10[more]
BLAST of Csa1G690160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211681|gb|KGN66777.1|4.5e-34100.00hypothetical protein Csa_1G690160 [Cucumis sativus][more]
gi|700206506|gb|KGN61625.1|9.5e-1661.19hypothetical protein Csa_2G191310 [Cucumis sativus][more]
gi|659102875|ref|XP_008452361.1|2.4e-1160.34PREDICTED: uncharacterized protein LOC103493422 [Cucumis melo][more]
gi|700211353|gb|KGN66449.1|2.4e-1156.72hypothetical protein Csa_1G610770 [Cucumis sativus][more]
gi|15224701|ref|NP_179493.1|1.6e-0742.47protein RALF-like 11 [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0019722 calcium-mediated signaling
biological_process GO:0007267 cell-cell signaling
cellular_component GO:0005575 cellular_component
cellular_component GO:0048046 apoplast
cellular_component GO:0000793 condensed chromosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005179 hormone activity
molecular_function GO:0004871 signal transducer activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106968cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G690160.1Csa1G690160.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106968CU106968transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 32..67
score: 2.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G690160Cucsa.291560Cucumber (Gy14) v1cgycuB417
Csa1G690160CsGy1G032140Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G690160Melon (DHL92) v3.5.1cumeB045
Csa1G690160Watermelon (Charleston Gray)cuwcgB085
Csa1G690160Cucurbita pepo (Zucchini)cpecuB639
Csa1G690160Cucurbita pepo (Zucchini)cpecuB701
Csa1G690160Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G690160Bottle gourd (USVL1VR-Ls)culsiB081
Csa1G690160Melon (DHL92) v3.6.1cumedB037
Csa1G690160Silver-seed gourdcarcuB0927
Csa1G690160Watermelon (97103) v2cuwmbB082
Csa1G690160Cucumber (Gy14) v1cgycuB418
Csa1G690160Cucurbita maxima (Rimu)cmacuB064
Csa1G690160Cucurbita maxima (Rimu)cmacuB085
Csa1G690160Cucurbita moschata (Rifu)cmocuB075
Csa1G690160Cucurbita moschata (Rifu)cmocuB054