Csa1G560740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G560740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMads box protein, putative; contains IPR002100 (Transcription factor, MADS-box)
LocationChr1 : 20398807 .. 20399627 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTAAGTGTAGTAGTAGTGCATGCTCTTGAAACGTTTATAAAAAAACATATTAATAAGGTGATCATATTGCCATATTATATGTATATAATTAAACGTGTAGCTTCTTAAAGAAAATAATAGAGAGGTATGAATGTTTTAAACAGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAATTAAACCATCTTCTTCACAACCTCAAGCTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG

mRNA sequence

ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAATTAAACCATCTTCTTCACAACCTCAAGCTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG

Coding sequence (CDS)

ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAATTAAACCATCTTCTTCACAACCTCAAGCTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG

Protein sequence

MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP*
Homology
[Close]
BLAST of Csa1G560740 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.9e-55
Identity = 112/188 (59.57%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDS+RKAT+KKRK+GLMKKV ELSTLCGI ACAII+SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
             GVQRV+S+F+ +PEM+Q KKMV+QE FL+QRIAKA E L++ RKD+RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-----IKPSSSQPQAQVQAQAQA 180
           L     +  LN++DLNDLG++I+Q LKD+  RI+ L+     I  SSS   A  +     
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAASEGNIPM 180

Query: 181 PPTQPQTA 184
           P     TA
Sbjct: 181 PNLVATTA 188

[Close]
BLAST of Csa1G560740 vs. Swiss-Prot
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.9e-37
Identity = 80/175 (45.71%), Postives = 117/175 (66.86%), Query Frame = 1 

Query: 3   RKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPI 62
           ++K+KL+ I N  +RK T+ KRK+G+ KK++EL TLCG+EACA+++SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLT 122
           GV+ V+S+F ++  ++++KKMV+QETF+ QRIAK  EQL+K+R +N   +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 AAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSL-KIKPSSSQPQAQVQAQAQAP 177
               ++ L+  DL DL   ID+ L  +T RI+ L +   SSS     + A A AP
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVANAAAP 176

[Close]
BLAST of Csa1G560740 vs. Swiss-Prot
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-35
Identity = 77/161 (47.83%), Postives = 109/161 (67.70%), Query Frame = 1 

Query: 3   RKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPI 62
           R K+KL++I NDS RK T+ KRK+G++KK +EL TLCG++ACA+I SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLT 122
           GV+ V+S+F +   ++++KKMV+QETFLRQRIAK  E+L+K+R +NR  +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 AAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSS 164
               +  L+  DL DL   +++ L  +  R++ LK    SS
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESS 162

[Close]
BLAST of Csa1G560740 vs. Swiss-Prot
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-33
Identity = 71/154 (46.10%), Postives = 102/154 (66.23%), Query Frame = 1 

Query: 4   KKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIG 63
           KKVKL+ IAN+ +RK ++ KRK G+ KK+ ELSTLCG++ACA+I+SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTA 123
            ++V S+F +MP   ++KKM++QET+L +RI KA EQLK +  +NRE ++ R MF  +  
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK 158
               +  +  DL DL   I+  L  +  RI+S+K
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK 155

[Close]
BLAST of Csa1G560740 vs. Swiss-Prot
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 69/154 (44.81%), Postives = 101/154 (65.58%), Query Frame = 1 

Query: 4   KKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIG 63
           KKVKL+ IAN+ +RK ++ KRK G+ KK+ ELSTLCG++ACA+I+SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTA 123
            ++V S+F +MP   +++KM++QET L +RI KA EQLK +  +NRE ++ R MF  +  
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 AKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK 158
               +  +  DL DL   ++  L  +  RI+S+K
Sbjct: 122 KMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIK 155

[Close]
BLAST of Csa1G560740 vs. TrEMBL
Match: A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 3.7e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180
           LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 226
           QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 225

[Close]
BLAST of Csa1G560740 vs. TrEMBL
Match: D7UAA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.0e-83
Identity = 164/241 (68.05%), Postives = 191/241 (79.25%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI NDSARKAT+KKRK+GLMKKVSELSTLCGI+ACAI++SPYDSQPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVL+ FKKMPEMEQSKKMVNQE+FLRQRIAK NEQLKK RKDNREKEIT++M+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQA------- 180
           LT  KGL  LN++DLNDLGW+IDQNLKDI  RI+SL  K + SQ  A   A A       
Sbjct: 121 LT-GKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLN-KEAQSQAAAAAAAAAGQLIKTG 180

Query: 181 -QAPPTQP--------QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 226
            +A   +P        Q   W ++LV+P +QMGF GDDM+LPFGD   N++NA+W N FF
Sbjct: 181 GKAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFF 236

[Close]
BLAST of Csa1G560740 vs. TrEMBL
Match: V4SWL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.3e-78
Identity = 154/241 (63.90%), Postives = 189/241 (78.42%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDSARKAT+KKRK+GL+KKVSELSTLCGI+ACAIIFSPYDSQPE+WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVLSQFKKMPEMEQSKKMVNQ++FLRQRIAKANEQLKK RKDNREKEIT++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-------------IKPSSSQPQA 180
           LT  K L  LNM+DLNDLGWLI+QNLK+I  R+++L              +K +    Q 
Sbjct: 121 LT-GKALLNLNMMDLNDLGWLIEQNLKEICKRMETLSKGTSTHNSSNYGVVKNNGEASQQ 180

Query: 181 QVQAQA---QAPPTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 226
           QV   +   Q      Q   WL++L++PQ+ MGF G++++ PFG+ ++   + +WSN F+
Sbjct: 181 QVDKSSGFDQMSMEAMQKQQWLLDLMNPQEHMGFGGEEIMYPFGESSH---STLWSNPFY 237

[Close]
BLAST of Csa1G560740 vs. TrEMBL
Match: B9S273_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.1e-78
Identity = 157/255 (61.57%), Postives = 193/255 (75.69%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+ND+ARKAT+KKRK+GLMKKVSELSTLCG++ACAII+SPYD+QPE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
            I VQRVLSQFK MPEMEQSKKMVNQE+FLRQRI KANEQLKK RKDNREKE+T++MFQS
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIK----------PSSSQPQ---- 180
           LT  K L+ LNM+DLNDLGW+I+Q LKDI  +++++  +          P S  PQ    
Sbjct: 121 LT-GKTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPPPSPPPQQLPP 180

Query: 181 --AQVQAQAQAPPTQP--------------QTAAWLMELVSPQDQMGFVGDDMLLPFGDQ 226
                QA A+  P+Q               Q   W+M+L++P + MGF+GD+M+LPFGD 
Sbjct: 181 PSGPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMMLPFGD- 240

[Close]
BLAST of Csa1G560740 vs. TrEMBL
Match: V4S796_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006519mg PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.4e-77
Identity = 153/241 (63.49%), Postives = 188/241 (78.01%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDSARKAT+KKRK+GL+KKVSELSTLCGI+ACAIIFSPYDSQPE+WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVLSQFKKMPEMEQSKKMVNQ++FLRQRIAKANEQLKK RKDNREKEIT++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-------------IKPSSSQPQA 180
           LT  K L  LNM+DLNDLGWLI+QNLK+I  R+++L              +K +    Q 
Sbjct: 121 LT-GKALLNLNMMDLNDLGWLIEQNLKEICKRMETLNNGASTHNSSNYGLVKNNGEASQQ 180

Query: 181 QVQAQA---QAPPTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 226
           QV   +   Q      Q   WL++L++ Q+ MGF G++++ PFG+ ++   + +WSN F+
Sbjct: 181 QVDKSSGFDQMSMEAMQKQQWLLDLMNLQEHMGFGGEEIMYPFGESSH---STLWSNPFY 237

[Close]
BLAST of Csa1G560740 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 214.9 bits (546), Expect = 5.0e-56
Identity = 112/188 (59.57%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDS+RKAT+KKRK+GLMKKV ELSTLCGI ACAII+SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
             GVQRV+S+F+ +PEM+Q KKMV+QE FL+QRIAKA E L++ RKD+RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-----IKPSSSQPQAQVQAQAQA 180
           L     +  LN++DLNDLG++I+Q LKD+  RI+ L+     I  SSS   A  +     
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIEILRNSGTEIGESSSVAVAASEGNIPM 180

Query: 181 PPTQPQTA 184
           P     TA
Sbjct: 181 PNLVATTA 188

[Close]
BLAST of Csa1G560740 vs. TAIR10
Match: AT5G26630.1 (AT5G26630.1 MADS-box transcription factor family protein)

HSP 1 Score: 167.5 bits (423), Expect = 9.2e-42
Identity = 85/198 (42.93%), Postives = 127/198 (64.14%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTR+KVK+ +I N++ARK+T+KKRK+GL+KK  EL  LCG+   A++ SPY+  PE+WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
                +V+SQ+K M  M+++KKMVNQETFL+QRI KA E  KK+RK+N+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180
           L+    +  +   +L D G++I+Q LKD+  RI+ LK    +++P     + A  P   P
Sbjct: 121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILK---RNNEP-----SSALVPVAAP 180

Query: 181 QTAAWLMELVSPQDQMGF 199
            T++ +  +      +GF
Sbjct: 181 TTSSVMPVVEMGSSSVGF 190

[Close]
BLAST of Csa1G560740 vs. TAIR10
Match: AT1G65300.1 (AT1G65300.1 AGAMOUS-like 38)

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-38
Identity = 80/175 (45.71%), Postives = 117/175 (66.86%), Query Frame = 1 

Query: 3   RKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPI 62
           ++K+KL+ I N  +RK T+ KRK+G+ KK++EL TLCG+EACA+++SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLT 122
           GV+ V+S+F ++  ++++KKMV+QETF+ QRIAK  EQL+K+R +N   +I  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 AAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSL-KIKPSSSQPQAQVQAQAQAP 177
               ++ L+  DL DL   ID+ L  +T RI+ L +   SSS     + A A AP
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIENGESSSSLPLPIVANAAAP 176

[Close]
BLAST of Csa1G560740 vs. TAIR10
Match: AT1G65330.1 (AT1G65330.1 MADS-box transcription factor family protein)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-36
Identity = 77/161 (47.83%), Postives = 109/161 (67.70%), Query Frame = 1 

Query: 3   RKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPI 62
           R K+KL++I NDS RK T+ KRK+G++KK +EL TLCG++ACA+I SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLT 122
           GV+ V+S+F +   ++++KKMV+QETFLRQRIAK  E+L+K+R +NR  +I  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 AAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSS 164
               +  L+  DL DL   +++ L  +  R++ LK    SS
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESS 162

[Close]
BLAST of Csa1G560740 vs. TAIR10
Match: AT3G05860.1 (AT3G05860.1 MADS-box transcription factor family protein)

HSP 1 Score: 147.5 bits (371), Expect = 9.8e-36
Identity = 78/151 (51.66%), Postives = 103/151 (68.21%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKK+ L+YI N+S RKAT+ KRK+GL+KK+ ELS LCGIEACA+I+SP++S PE+WPS
Sbjct: 1   MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSPFNSNPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
              V+ V+  F+ + ++EQ KKMV+ E F+RQ I+K  E   K   DN E+ +   MFQ 
Sbjct: 61  NSEVKNVMENFEMLTKLEQEKKMVSHEGFIRQNISKTMESNNKKMIDNAERTMKEAMFQ- 120

Query: 121 LTAAKGLHGLNMLDLN--DLGWLIDQNLKDI 150
           L + KG   LN+ D N  DL   IDQ LK++
Sbjct: 121 LLSGKG-EKLNLTDRNREDLCKYIDQYLKEL 149

[Close]
BLAST of Csa1G560740 vs. NCBI nr
Match: gi|449435956|ref|XP_004135760.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 5.3e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180
           LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 226
           QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 225

[Close]
BLAST of Csa1G560740 vs. NCBI nr
Match: gi|659099266|ref|XP_008450513.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 6.3e-117
Identity = 218/225 (96.89%), Postives = 218/225 (96.89%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180
           LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK KPS  QPQAQ QAQA  P TQP
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-KPSLPQPQAQAQAQA-PPTTQP 180

Query: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 226
           QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP 223

[Close]
BLAST of Csa1G560740 vs. NCBI nr
Match: gi|225450435|ref|XP_002279507.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera])

HSP 1 Score: 315.1 bits (806), Expect = 1.0e-82
Identity = 164/241 (68.05%), Postives = 191/241 (79.25%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI NDSARKAT+KKRK+GLMKKVSELSTLCGI+ACAI++SPYDSQPE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVL+ FKKMPEMEQSKKMVNQE+FLRQRIAK NEQLKK RKDNREKEIT++M+QS
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQA------- 180
           LT  KGL  LN++DLNDLGW+IDQNLKDI  RI+SL  K + SQ  A   A A       
Sbjct: 121 LT-GKGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLN-KEAQSQAAAAAAAAAGQLIKTG 180

Query: 181 -QAPPTQP--------QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 226
            +A   +P        Q   W ++LV+P +QMGF GDDM+LPFGD   N++NA+W N FF
Sbjct: 181 GKAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFF 236

[Close]
BLAST of Csa1G560740 vs. NCBI nr
Match: gi|1009116500|ref|XP_015874807.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba])

HSP 1 Score: 310.5 bits (794), Expect = 2.5e-81
Identity = 164/248 (66.13%), Postives = 193/248 (77.82%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDSARKAT+KKRK+GL+KKV ELSTLC ++ACAII+SPYD+QPEL+PS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLVKKVGELSTLCDVDACAIIYSPYDTQPELFPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVLS+FKKMPEMEQSKKMVNQE+FLRQRIAKANEQLKK RKDNREKE+TR+MFQS
Sbjct: 61  PLGVQRVLSKFKKMPEMEQSKKMVNQESFLRQRIAKANEQLKKQRKDNREKEMTRVMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQV----------- 180
           LT  KGL GLNM+DLNDLGWLIDQNLKDI  RI+S K + SS +                
Sbjct: 121 LT-GKGLQGLNMMDLNDLGWLIDQNLKDINKRIESHKAEASSQKHDVAAPGMSSAADGMA 180

Query: 181 -------QAQAQAPPTQ-----PQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNA 226
                  QA A+ P  +      Q   W M+L++PQ+ +GF GD+M+LPFGD  +NH NA
Sbjct: 181 RSGENGSQAMAEKPAFEVNVETMQRQQWFMDLMNPQEGLGFGGDEMILPFGD--HNH-NA 240

[Close]
BLAST of Csa1G560740 vs. NCBI nr
Match: gi|568882198|ref|XP_006493926.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Citrus sinensis])

HSP 1 Score: 300.4 bits (768), Expect = 2.6e-78
Identity = 154/241 (63.90%), Postives = 189/241 (78.42%), Query Frame = 1 

Query: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60
           MTRKKVKLAYI+NDSARKAT+KKRK+GL+KKVSELSTLCGI+ACAIIFSPYDSQPE+WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120
           P+GVQRVLSQFKKMPEMEQSKKMVNQ++FLRQRIAKANEQLKK RKDNREKEIT++MFQS
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLK-------------IKPSSSQPQA 180
           LT  K L  LNM+DLNDLGWLI+QNLK+I  R+++L              +K +    Q 
Sbjct: 121 LT-GKALLNLNMMDLNDLGWLIEQNLKEICKRMETLNNGASTHNSSNYGVVKNNGEASQQ 180

Query: 181 QVQAQA---QAPPTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 226
           QV   +   Q      Q   WL++L++PQ+ MGF G++++ PFG+ ++   + +WSN F+
Sbjct: 181 QVDKSSGFDQMSMEATQKQQWLLDLMNPQEHMGFGGEEIMYPFGESSH---STLWSNPFY 237

The following BLAST results are available for this feature:
BLAST of Csa1G560740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL80_ARATH8.9e-5559.57Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1[more]
PHE2_ARATH4.9e-3745.71MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1[more]
PHE1_ARATH2.1e-3547.83MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1[more]
AGL36_ARATH3.3e-3346.10Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1[more]
AGL90_ARATH2.1e-3244.81Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2[more]
BLAST of Csa1G560740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVS3_CUCSA3.7e-124100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1[more]
D7UAA8_VITVI7.0e-8368.05Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=... [more]
V4SWL0_9ROSI2.3e-7863.90Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1[more]
B9S273_RICCO3.1e-7861.57Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1[more]
V4S796_9ROSI3.4e-7763.49Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006519mg PE=4 SV=1[more]
BLAST of Csa1G560740 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48670.15.0e-5659.57 AGAMOUS-like 80[more]
AT5G26630.19.2e-4242.93 MADS-box transcription factor family protein[more]
AT1G65300.12.8e-3845.71 AGAMOUS-like 38[more]
AT1G65330.11.2e-3647.83 MADS-box transcription factor family protein[more]
AT3G05860.19.8e-3651.66 MADS-box transcription factor family protein[more]
BLAST of Csa1G560740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435956|ref|XP_004135760.1|5.3e-124100.00PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus][more]
gi|659099266|ref|XP_008450513.1|6.3e-11796.89PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo][more]
gi|225450435|ref|XP_002279507.1|1.0e-8268.05PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera][more]
gi|1009116500|ref|XP_015874807.1|2.5e-8166.13PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba][more]
gi|568882198|ref|XP_006493926.1|2.6e-7863.90PREDICTED: agamous-like MADS-box protein AGL80 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G560740.1Csa1G560740.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 3.4E-10coord: 3..23
score: 3.4E-10coord: 23..38
score: 3.4
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..51
score: 7.1
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 4.6
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..49
score: 17
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..95
score: 4.19
NoneNo IPR availableunknownCoilCoilcoord: 87..114
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..218
score: 7.3E
NoneNo IPR availablePANTHERPTHR11945:SF183AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATEDcoord: 2..218
score: 7.3E