Cp4.1LG04g00070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g00070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMads box protein, putative
LocationCp4.1LG04 : 2178725 .. 2179886 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTGTTCAGCCCGTACGATTCTCCGCCCGAGCTTTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGCAAGAAGATGGTAAAATTCCTTCGTTCGTTACCCAACCCTTTTTAGGCTAAACCTATCTGTTAAGAATGAGAGACAGAAACGGGATTGAAAATTCCTGAAATATAAGTGGGGTCGAAAGTTTACTTCACTTTCTCATTCTTAACATGATGATATCAGAGTAAGAATGAGATAATAGTGGGATTGAAAATCCCAGAAACGTTAGTGGGTCTAAACTCCATTTCTGTTTCTGATTCTTAGCATGGTATCAGAGCAAGATGAAAATCTCAGACACATTAGTGGGTGGAAAGTCTAATTCTGTTTCTCATTTGGTATCAGGTTAATAATGAGGGGATGGAAAATCCCAGAAACAAAAGTGGGATTCAAAATCGGAGAAACATAAGTGAGGTCGAGAGCAAGAATGAGAAACAATTGAAAACCCCATAAATATAAGTGGGTCAAAAATTTACTTCTGTTCGTTCTCAACTTGATATAAGAGTATTATATTTTAGATGTTATTAGAACTTCTCATTCTTAACACAATTATTGACGATTTGGATCACAGGTGAACCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGCGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGGGGACTTGAACGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCGTTCAAAAGGCTGGTGCCGCCGCCGCCCCAGACGGGGGCGTGGGTGATGGAGGTGGTGAGCCCTGAGGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTCGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTTTTCTCTTAG

mRNA sequence

ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTGTTCAGCCCGTACGATTCTCCGCCCGAGCTTTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGCAAGAAGATGGTGAACCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGCGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGGGGACTTGAACGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCGTTCAAAAGGCTGGTGCCGCCGCCGCCCCAGACGGGGGCGTGGGTGATGGAGGTGGTGAGCCCTGAGGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTCGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTTTTCTCTTAG

Coding sequence (CDS)

ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTGTTCAGCCCGTACGATTCTCCGCCCGAGCTTTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGCAAGAAGATGGTGAACCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGCGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGGGGACTTGAACGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCGTTCAAAAGGCTGGTGCCGCCGCCGCCCCAGACGGGGGCGTGGGTGATGGAGGTGGTGAGCCCTGAGGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTCGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTTTTCTCTTAG

Protein sequence

MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFFS
Homology
[Close]
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match: AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 93/154 (60.39%), Postives = 127/154 (82.47%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDS+RKAT+KKRKKGL+KK+ EL+TLCGI ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
             GVQRV+S+F+ +PEM+Q KKMV+Q+ FL+QRIAKA E L++ RK++RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRID 155
           L G   +  L + DLND+ ++I++ LK +++RI+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

[Close]
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match: PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 74/152 (48.68%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 3   RKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           ++K+KL+ I N  +RK T+ KRKKG+ KKL+EL TLCG++ACA+V+SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F  +  ++++KKMV+Q+TF+ QRIAK +EQL+K+R EN   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 GPEWLQGLTMGDLNDISWVIDETLKGISKRID 155
           G   +  L   DL D+S  ID+ L G+++RI+
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIE 153

[Close]
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match: PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 86/206 (41.75%), Postives = 127/206 (61.65%), Query Frame = 1 

Query: 3   RKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           R K+KL++I NDS RK T+ KRKKG+LKK +EL TLCG+ ACA++ SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F     ++++KKMV+Q+TFLRQRIAK  E+L+K+R ENR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 GPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR------LVPPPPQTGAWVMEVVSP 182
           G   +  L   DL D++  +++ L G+ +R++  K        VPPP      V++   P
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPTVVDASVP 181

Query: 183 EDGMEFVGDDMGLSFEDHSYNSENVI 203
                 +G D G   +D + N +  +
Sbjct: 182 ------IGFD-GRMIQDQNQNQQEPV 200

[Close]
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match: AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.5e-32
Identity = 81/193 (41.97%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 4   KKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   ++KKM++Q+T+L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSP---EDGM 183
                     DL D+   I+  L  ++ RI+S K       + G  ++  VSP     G+
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK-------ENGESLLSSVSPFPTRIGV 181

Query: 184 EFVGDDMGLSFED 194
           + +GD+   SF D
Sbjct: 182 DEIGDE---SFSD 184

[Close]
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match: AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-31
Identity = 80/198 (40.40%), Postives = 120/198 (60.61%), Query Frame = 1 

Query: 4   KKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   +++KM++Q+T L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSP---EDGM 183
                     DL D+   ++  L  ++ RI+S K       + G  ++  VSP     G+
Sbjct: 122 KMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIK-------ENGESLLSSVSPFPTRIGV 181

Query: 184 EFVGDDMGLSFEDHSYNS 199
           + +GD+   SF D   +S
Sbjct: 182 DEIGDE---SFSDSPIHS 189

[Close]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match: A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 6.3e-78
Identity = 154/224 (68.75%), Postives = 176/224 (78.57%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFK----------------RLVPPPP 180
           LT  + L GL M DLND+ W+ID+ LK I+ RIDS K                +  P  P
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTGAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 209
           QT AW+ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 224

[Close]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match: D7UAA8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-61
Identity = 133/239 (55.65%), Postives = 162/239 (67.78%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGL+KK+SEL+TLCGI ACAI++SPYDS PE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVL+ FK MPEMEQSKKMVNQ++FLRQRIAK  EQLKK RK+NREKE+T++M+Q 
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGA------------ 180
           LTG + LQ L + DLND+ W+ID+ LK I KRI+S  +         A            
Sbjct: 121 LTG-KGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGG 180

Query: 181 -------------------WVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 209
                              W +++V+P + M F GDDM L F D   N+ N +W N FF
Sbjct: 181 KAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFF 235

[Close]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match: B9S273_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.7e-59
Identity = 133/254 (52.36%), Postives = 167/254 (65.75%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI ND+ARKAT+KKRKKGL+KK+SEL+TLCG+ ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            + VQRVLSQFKNMPEMEQSKKMVNQ++FLRQRI KA EQLKK RK+NREKEVT++MFQ 
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVP-----------------PP 180
           LTG + L  L M DLND+ W+I++ LK I K++++  + +                  PP
Sbjct: 121 LTG-KTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPPPSPPPQQLPP 180

Query: 181 PQTGAWVMEVVSPED-----------------------------GMEFVGDDMGLSFEDH 209
           P   A  +  V+P                                M F+GD+M L F DH
Sbjct: 181 PSGPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMMLPFGDH 240

[Close]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match: V4SWL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.7e-57
Identity = 118/158 (74.68%), Postives = 137/158 (86.71%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGLLKK+SEL+TLCGI ACAI+FSPYDS PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELSTLCGIDACAIIFSPYDSQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVLSQFK MPEMEQSKKMVNQD+FLRQRIAKA EQLKK RK+NREKE+T++MFQ 
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQDSFLRQRIAKANEQLKKQRKDNREKEITQVMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR 159
           LTG + L  L M DLND+ W+I++ LK I KR+++  +
Sbjct: 121 LTG-KALLNLNMMDLNDLGWLIEQNLKEICKRMETLSK 157

[Close]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match: A0A0D2R607_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G292000 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 8.0e-57
Identity = 128/250 (51.20%), Postives = 160/250 (64.00%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGL+KK+SEL+TLCGI ACAI++SPY+S PE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIMYSPYESQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLS+FK +PEMEQSKKMVNQ++FL QRIAKA EQLKK  K+NREKE+T +MFQ 
Sbjct: 61  AMGVQRVLSKFKKVPEMEQSKKMVNQESFLAQRIAKANEQLKKQCKDNREKEMTHVMFQN 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR--------------------LV 180
           L G   + GL + DLND++W+ID+ LK I KR+D+  +                    + 
Sbjct: 121 LNGKAGILGLNVVDLNDLAWLIDQNLKEIDKRVDALAKTSLNPQGQGGSSSSVTVPPMVT 180

Query: 181 PPPPQTGAWVMEVVSPEDGME----------------------FVGDDMGLSFEDHSYNS 209
           P    TG  V   V+  D M+                      F G++    F D  +N 
Sbjct: 181 PEVASTGDMVQGEVNNMDWMQRQQWIMELMNTNNNPQTQTHVGFSGEETVFPFGDKIHNV 240

[Close]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match: AT5G48670.1 (AT5G48670.1 AGAMOUS-like 80)

HSP 1 Score: 187.6 bits (475), Expect = 7.9e-48
Identity = 93/154 (60.39%), Postives = 127/154 (82.47%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDS+RKAT+KKRKKGL+KK+ EL+TLCGI ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
             GVQRV+S+F+ +PEM+Q KKMV+Q+ FL+QRIAKA E L++ RK++RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRID 155
           L G   +  L + DLND+ ++I++ LK +++RI+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

[Close]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match: AT5G26630.1 (AT5G26630.1 MADS-box transcription factor family protein)

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-40
Identity = 91/191 (47.64%), Postives = 126/191 (65.97%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M R+KVK+ +I N++ARK+T+KKRKKGLLKK  EL  LCG+   A+V SPY+  PE+WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
                +V+SQ+K M  M+++KKMVNQ+TFL+QRI KA E  KK+RKEN+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR-------LVPPPPQTGAWVMEV 180
           L+G   +  +   +L D  +VI++ LK +++RI+  KR       LVP    T + VM V
Sbjct: 121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKRNNEPSSALVPVAAPTTSSVMPV 180

Query: 181 VSPEDGMEFVG 185
           V  E G   VG
Sbjct: 181 V--EMGSSSVG 189

[Close]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match: AT1G65300.1 (AT1G65300.1 AGAMOUS-like 38)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 74/152 (48.68%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 3   RKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           ++K+KL+ I N  +RK T+ KRKKG+ KKL+EL TLCG++ACA+V+SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F  +  ++++KKMV+Q+TF+ QRIAK +EQL+K+R EN   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 GPEWLQGLTMGDLNDISWVIDETLKGISKRID 155
           G   +  L   DL D+S  ID+ L G+++RI+
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIE 153

[Close]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match: AT1G65330.1 (AT1G65330.1 MADS-box transcription factor family protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 86/206 (41.75%), Postives = 127/206 (61.65%), Query Frame = 1 

Query: 3   RKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           R K+KL++I NDS RK T+ KRKKG+LKK +EL TLCG+ ACA++ SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F     ++++KKMV+Q+TFLRQRIAK  E+L+K+R ENR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 GPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR------LVPPPPQTGAWVMEVVSP 182
           G   +  L   DL D++  +++ L G+ +R++  K        VPPP      V++   P
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKENGESSSSVPPPIGVAPTVVDASVP 181

Query: 183 EDGMEFVGDDMGLSFEDHSYNSENVI 203
                 +G D G   +D + N +  +
Sbjct: 182 ------IGFD-GRMIQDQNQNQQEPV 200

[Close]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match: AT5G26650.1 (AT5G26650.1 AGAMOUS-like 36)

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-33
Identity = 81/193 (41.97%), Postives = 119/193 (61.66%), Query Frame = 1 

Query: 4   KKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   ++KKM++Q+T+L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGAWVMEVVSP---EDGM 183
                     DL D+   I+  L  ++ RI+S K       + G  ++  VSP     G+
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK-------ENGESLLSSVSPFPTRIGV 181

Query: 184 EFVGDDMGLSFED 194
           + +GD+   SF D
Sbjct: 182 DEIGDE---SFSD 184

[Close]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match: gi|659099266|ref|XP_008450513.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 5.3e-78
Identity = 155/222 (69.82%), Postives = 178/222 (80.18%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKR-LVPPP-------------PQT 180
           LT  + L GL M DLND+ W+ID+ LK I+ RIDS K+  +P P             PQT
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQPQAQAQAQAPPTTQPQT 180

Query: 181 GAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 209
            AW+ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 AAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 222

[Close]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match: gi|449435956|ref|XP_004135760.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus])

HSP 1 Score: 298.5 bits (763), Expect = 9.0e-78
Identity = 154/224 (68.75%), Postives = 176/224 (78.57%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFK----------------RLVPPPP 180
           LT  + L GL M DLND+ W+ID+ LK I+ RIDS K                +  P  P
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQP 180

Query: 181 QTGAWVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 209
           QT AW+ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 224

[Close]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match: gi|1009116500|ref|XP_015874807.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba])

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-62
Identity = 139/247 (56.28%), Postives = 172/247 (69.64%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGL+KK+ EL+TLC + ACAI++SPYD+ PEL+PS
Sbjct: 1   MTRKKVKLAYISNDSARKATFKKRKKGLVKKVGELSTLCDVDACAIIYSPYDTQPELFPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVLS+FK MPEMEQSKKMVNQ++FLRQRIAKA EQLKK RK+NREKE+TR+MFQ 
Sbjct: 61  PLGVQRVLSKFKKMPEMEQSKKMVNQESFLRQRIAKANEQLKKQRKDNREKEMTRVMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRL-------VPPPPQTGA----- 180
           LTG + LQGL M DLND+ W+ID+ LK I+KRI+S K         V  P  + A     
Sbjct: 121 LTG-KGLQGLNMMDLNDLGWLIDQNLKDINKRIESHKAEASSQKHDVAAPGMSSAADGMA 180

Query: 181 ---------------------------WVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENV 209
                                      W M++++P++G+ F GD+M L F DH++N+   
Sbjct: 181 RSGENGSQAMAEKPAFEVNVETMQRQQWFMDLMNPQEGLGFGGDEMILPFGDHNHNA--- 240

[Close]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match: gi|225450435|ref|XP_002279507.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera])

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-61
Identity = 133/239 (55.65%), Postives = 162/239 (67.78%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGL+KK+SEL+TLCGI ACAI++SPYDS PE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVL+ FK MPEMEQSKKMVNQ++FLRQRIAK  EQLKK RK+NREKE+T++M+Q 
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVPPPPQTGA------------ 180
           LTG + LQ L + DLND+ W+ID+ LK I KRI+S  +         A            
Sbjct: 121 LTG-KGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQSQAAAAAAAAAGQLIKTGG 180

Query: 181 -------------------WVMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 209
                              W +++V+P + M F GDDM L F D   N+ N +W N FF
Sbjct: 181 KAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFF 235

[Close]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match: gi|255558128|ref|XP_002520092.1| (PREDICTED: agamous-like MADS-box protein AGL80 [Ricinus communis])

HSP 1 Score: 237.3 bits (604), Expect = 2.5e-59
Identity = 133/254 (52.36%), Postives = 167/254 (65.75%), Query Frame = 1 

Query: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI ND+ARKAT+KKRKKGL+KK+SEL+TLCG+ ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            + VQRVLSQFKNMPEMEQSKKMVNQ++FLRQRI KA EQLKK RK+NREKEVT++MFQ 
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVP-----------------PP 180
           LTG + L  L M DLND+ W+I++ LK I K++++  + +                  PP
Sbjct: 121 LTG-KTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVTAAPPPPSPPPQQLPP 180

Query: 181 PQTGAWVMEVVSPED-----------------------------GMEFVGDDMGLSFEDH 209
           P   A  +  V+P                                M F+GD+M L F DH
Sbjct: 181 PSGPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMMLPFGDH 240

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g00070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL80_ARATH1.4e-4660.39Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana GN=AGL80 PE=1 SV=1[more]
PHE2_ARATH4.2e-3548.68MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana GN=PHE2 PE=1 SV=1[more]
PHE1_ARATH4.2e-3541.75MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana GN=PHE1 PE=1 SV=1[more]
AGL36_ARATH7.5e-3241.97Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1[more]
AGL90_ARATH4.9e-3140.40Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana GN=AGL90 PE=1 SV=2[more]
BLAST of Cp4.1LG04g00070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVS3_CUCSA6.3e-7868.75Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560740 PE=4 SV=1[more]
D7UAA8_VITVI1.4e-6155.65Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00300 PE=4 SV=... [more]
B9S273_RICCO1.7e-5952.36Mads box protein, putative OS=Ricinus communis GN=RCOM_1708810 PE=4 SV=1[more]
V4SWL0_9ROSI4.7e-5774.68Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013728mg PE=4 SV=1[more]
A0A0D2R607_GOSRA8.0e-5751.20Uncharacterized protein OS=Gossypium raimondii GN=B456_004G292000 PE=4 SV=1[more]
BLAST of Cp4.1LG04g00070 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48670.17.9e-4860.39 AGAMOUS-like 80[more]
AT5G26630.14.7e-4047.64 MADS-box transcription factor family protein[more]
AT1G65300.12.4e-3648.68 AGAMOUS-like 38[more]
AT1G65330.12.4e-3641.75 MADS-box transcription factor family protein[more]
AT5G26650.14.2e-3341.97 AGAMOUS-like 36[more]
BLAST of Cp4.1LG04g00070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659099266|ref|XP_008450513.1|5.3e-7869.82PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo][more]
gi|449435956|ref|XP_004135760.1|9.0e-7868.75PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus][more]
gi|1009116500|ref|XP_015874807.1|3.1e-6256.28PREDICTED: agamous-like MADS-box protein AGL80 [Ziziphus jujuba][more]
gi|225450435|ref|XP_002279507.1|2.0e-6155.65PREDICTED: agamous-like MADS-box protein AGL80 [Vitis vinifera][more]
gi|255558128|ref|XP_002520092.1|2.5e-5952.36PREDICTED: agamous-like MADS-box protein AGL80 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g00070.1Cp4.1LG04g00070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 4.3E-9coord: 3..23
score: 4.3E-9coord: 38..59
score: 4.
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..52
score: 1.3
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 7.1
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..49
score: 16
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 1..85
score: 3.01
NoneNo IPR availableunknownCoilCoilcoord: 87..114
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..158
score: 3.8
NoneNo IPR availablePANTHERPTHR11945:SF183AGAMOUS-LIKE MADS-BOX PROTEIN AGL80-RELATEDcoord: 2..158
score: 3.8