Carg16998 (gene) Silver-seed gourd

NameCarg16998
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionagamous-like MADS-box protein AGL80
LocationCucurbita_argyrosperma_scaffold_061 : 931782 .. 932886 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTCTGAACGACTCTGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTCTTCAGCCCCTACGATTCTCCGCCCGAGCTCTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGTAAGAAGATGGTAAAATTCCTTCGTTCGTTACCCAACTCATTTTAGGCTAAACCTATGAAACGTTAGTGGCTCTAAAGTTTACTTCAGTTTCTCATTCTTAACATAATGATATCAGATAAATCCTAGAAACGTTAGTGGATCTAAAGTCCATTTCTATTTCTAATTCTTACCATGGTATCACAGTAAGAATGAAAAACATGAGTTGGATGGAAAATCACAGAAACAGGACTGGGATTTAATCTAATTCTATTTCTCATTTGGTATCAGATCAATAATGAGGGGATGGAAAATCCCGGAAACAAAAGTGGGATTCAAAATCACAAAAATATAAGTGAGGTCGAAAGTCCATGAGAAACAATTGAAATAAAAAATTTACTTCTGTTTCTTGTTCTTAACATGATATAAGGGCATTATTTTTTTTTTAAGATGTTATTAGAGCTTCTCATTCTTAACACAATTATTGACGATCTTCGGATAACAGGTGAATCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGGGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGTGGACTTGAATGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCCTTCAAAAGGCTGCTGCCGCCGCCGCCCCCCCAGACGGCGGCGTGGGCGATGGAGGTGGTGAGCCCTGAAGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTTGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTCTTCTCTTAG

mRNA sequence

ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTCTGAACGACTCTGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTCTTCAGCCCCTACGATTCTCCGCCCGAGCTCTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGTAAGAAGATGGTGAATCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGGGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGTGGACTTGAATGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCCTTCAAAAGGCTGCTGCCGCCGCCGCCCCCCCAGACGGCGGCGTGGGCGATGGAGGTGGTGAGCCCTGAAGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTTGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTCTTCTCTTAG

Coding sequence (CDS)

ATGGCAAGGAAGAAGGTGAAGTTGGCTTACATTCTGAACGACTCTGCAAGAAAGGCCACCTACAAGAAGAGGAAGAAAGGTCTTTTGAAGAAGTTGAGTGAATTAACCACTCTTTGTGGGATCCAAGCTTGCGCAATCGTCTTCAGCCCCTACGATTCTCCGCCCGAGCTCTGGCCCTCCGTCCTCGGCGTCCAACGCGTTCTCTCTCAGTTCAAGAACATGCCCGAAATGGAGCAGAGTAAGAAGATGGTGAATCAAGACACGTTTCTGCGCCAACGGATCGCGAAAGCGGAGGAGCAGCTGAAGAAGATAAGGAAAGAAAATCGGGAGAAGGAGGTGACACGGTTGATGTTCCAGATCCTGACTGGACCAGAATGGTTGCAAGGTCTCACCATGGTGGACTTGAATGACATTAGTTGGGTCATTGACGAGACGCTGAAGGGCATCAGCAAACGCATTGACTCCTTCAAAAGGCTGCTGCCGCCGCCGCCCCCCCAGACGGCGGCGTGGGCGATGGAGGTGGTGAGCCCTGAAGATGGGATGGAGTTTGTAGGGGATGATATGGGTTTGAGTTTTGAAGATCATAGTTATAATAGTGAGAATGTGATATGGTCCAATGCCTTCTTCTCTTAG

Protein sequence

MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPPPPPQTAAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFFS
BLAST of Carg16998 vs. NCBI nr
Match: XP_023530040.1 (agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 3.4e-105
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           MARKKVKLAYI+NDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS
Sbjct: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
           VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI
Sbjct: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSPEDG 180
           LTGPEWLQGLTM DLNDISWVIDETLKGISKRIDSFKRL+P    QT AW MEVVSPEDG
Sbjct: 121 LTGPEWLQGLTMGDLNDISWVIDETLKGISKRIDSFKRLVP-PPPQTGAWVMEVVSPEDG 180

Query: 181 MEFVGDDMGLSFEDHSYNSENVIWSNAFFS 211
           MEFVGDDMGLSFEDHSYNSENVIWSNAFFS
Sbjct: 181 MEFVGDDMGLSFEDHSYNSENVIWSNAFFS 209

BLAST of Carg16998 vs. NCBI nr
Match: XP_023002939.1 (agamous-like MADS-box protein AGL80 [Cucurbita maxima])

HSP 1 Score: 385.6 bits (989), Expect = 1.1e-103
Identity = 195/210 (92.86%), Postives = 202/210 (96.19%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           MARKKVKLAYI+NDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS
Sbjct: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI
Sbjct: 61  ALGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSPEDG 180
           LTGPEWLQGL++VDLND+SWVIDETLKGISKRID FKRLLP  X QTA+W MEV SP+DG
Sbjct: 121 LTGPEWLQGLSVVDLNDLSWVIDETLKGISKRIDCFKRLLPPPXPQTASWVMEVASPQDG 180

Query: 181 MEFVGDDMGLSFEDHSYNSENVIWSNAFFS 211
           M FVGDDMGLSFEDHSYN+ENVIWSNAFFS
Sbjct: 181 MAFVGDDMGLSFEDHSYNTENVIWSNAFFS 210

BLAST of Carg16998 vs. NCBI nr
Match: XP_022931692.1 (agamous-like MADS-box protein AGL80 [Cucurbita moschata])

HSP 1 Score: 382.1 bits (980), Expect = 1.2e-102
Identity = 199/210 (94.76%), Postives = 201/210 (95.71%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           MARKKVKLAYI+NDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS
Sbjct: 1   MARKKVKLAYIVNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
           VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQ+
Sbjct: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQV 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSPEDG 180
           LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFK    XXXX    W MEVVSPEDG
Sbjct: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKXXXXXXXXXXXXWVMEVVSPEDG 180

Query: 181 MEFVGDDMGLSFEDHSYNSENVIWSNAFFS 211
           MEFVGDDMGLSFEDHSYNSENVIWSNAFFS
Sbjct: 181 MEFVGDDMGLSFEDHSYNSENVIWSNAFFS 210

BLAST of Carg16998 vs. NCBI nr
Match: XP_008450513.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 155/222 (69.82%), Postives = 177/222 (79.73%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKR-LLP------------XXXXQT 180
           LT  + L GL M+DLND+ W+ID+ LK I+ RIDS K+  LP                QT
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQXXXXXXXXXXXTTQPQT 180

Query: 181 AAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 210
           AAW ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 AAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 222

BLAST of Carg16998 vs. NCBI nr
Match: XP_004135760.1 (PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65990.1 hypothetical protein Csa_1G560740 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 5.7e-76
Identity = 156/224 (69.64%), Postives = 177/224 (79.02%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFK---------------RLLPXXXX 180
           LT  + L GL M+DLND+ W+ID+ LK I+ RIDS K                   XXX 
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIXXXXXXXXXXXXXXXXXXXXXP 180

Query: 181 QTAAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 210
           QTAAW ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 224

BLAST of Carg16998 vs. TAIR10
Match: AT5G48670.1 (AGAMOUS-like 80)

HSP 1 Score: 189.1 bits (479), Expect = 2.7e-48
Identity = 94/154 (61.04%), Postives = 128/154 (83.12%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDS+RKAT+KKRKKGL+KK+ EL+TLCGI ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
             GVQRV+S+F+ +PEM+Q KKMV+Q+ FL+QRIAKA E L++ RK++RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRID 155
           L G   +  L +VDLND+ ++I++ LK +++RI+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

BLAST of Carg16998 vs. TAIR10
Match: AT5G26630.1 (MADS-box transcription factor family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.5e-38
Identity = 79/158 (50.00%), Postives = 113/158 (71.52%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M R+KVK+ +I N++ARK+T+KKRKKGLLKK  EL  LCG+   A+V SPY+  PE+WPS
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYELNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
                +V+SQ+K M  M+++KKMVNQ+TFL+QRI KA E  KK+RKEN+E E+  +MF  
Sbjct: 61  REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKELEMKNIMFDC 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKR 159
           L+G   +  +   +L D  +VI++ LK +++RI+  KR
Sbjct: 121 LSGKTLVSSIEKTELRDFGYVIEQQLKDVNRRIEILKR 158

BLAST of Carg16998 vs. TAIR10
Match: AT1G65300.1 (AGAMOUS-like 38)

HSP 1 Score: 147.5 bits (371), Expect = 9.1e-36
Identity = 74/152 (48.68%), Postives = 111/152 (73.03%), Query Frame = 0

Query: 3   RKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           ++K+KL+ I N  +RK T+ KRKKG+ KKL+EL TLCG++ACA+V+SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F  +  ++++KKMV+Q+TF+ QRIAK +EQL+K+R EN   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 GPEWLQGLTMVDLNDISWVIDETLKGISKRID 155
           G   +  L   DL D+S  ID+ L G+++RI+
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIE 153

BLAST of Carg16998 vs. TAIR10
Match: AT1G65330.1 (MADS-box transcription factor family protein)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-34
Identity = 75/155 (48.39%), Postives = 109/155 (70.32%), Query Frame = 0

Query: 3   RKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           R K+KL++I NDS RK T+ KRKKG+LKK +EL TLCG+ ACA++ SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F     ++++KKMV+Q+TFLRQRIAK  E+L+K+R ENR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 GPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFK 158
           G   +  L   DL D++  +++ L G+ +R++  K
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILK 156

BLAST of Carg16998 vs. TAIR10
Match: AT5G26650.1 (AGAMOUS-like 36)

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 80/194 (41.24%), Postives = 117/194 (60.31%), Query Frame = 0

Query: 4   KKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   ++KKM++Q+T+L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSP---EDG 183
                     DL D+   I+  L  ++ RI+S K        +     +  VSP     G
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK--------ENGESLLSSVSPFPTRIG 181

Query: 184 MEFVGDDMGLSFED 195
           ++ +GD+   SF D
Sbjct: 182 VDEIGDE---SFSD 184

BLAST of Carg16998 vs. Swiss-Prot
Match: sp|Q9FJK3|AGL80_ARATH (Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-47
Identity = 94/154 (61.04%), Postives = 128/154 (83.12%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDS+RKAT+KKRKKGL+KK+ EL+TLCGI ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTNPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
             GVQRV+S+F+ +PEM+Q KKMV+Q+ FL+QRIAKA E L++ RK++RE E+T +MFQ 
Sbjct: 61  NSGVQRVVSEFRTLPEMDQHKKMVDQEGFLKQRIAKATETLRRQRKDSRELEMTEVMFQC 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRID 155
           L G   +  L +VDLND+ ++I++ LK +++RI+
Sbjct: 121 LIGNMEMFHLNIVDLNDLGYMIEQYLKDVNRRIE 154

BLAST of Carg16998 vs. Swiss-Prot
Match: sp|Q7XJK8|PHE2_ARATH (MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 74/152 (48.68%), Postives = 111/152 (73.03%), Query Frame = 0

Query: 3   RKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           ++K+KL+ I N  +RK T+ KRKKG+ KKL+EL TLCG++ACA+V+SP++S PE WPS  
Sbjct: 2   KRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSPFNSIPEAWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F  +  ++++KKMV+Q+TF+ QRIAK +EQL+K+R EN   ++  LMF  L 
Sbjct: 62  GVEDVVSKFMELSVLDRTKKMVDQETFISQRIAKEKEQLQKLRDENHNSQIRELMFGCLK 121

Query: 123 GPEWLQGLTMVDLNDISWVIDETLKGISKRID 155
           G   +  L   DL D+S  ID+ L G+++RI+
Sbjct: 122 GETNVYNLDGRDLQDLSLYIDKYLNGLTRRIE 153

BLAST of Carg16998 vs. Swiss-Prot
Match: sp|O80805|PHE1_ARATH (MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-33
Identity = 75/155 (48.39%), Postives = 109/155 (70.32%), Query Frame = 0

Query: 3   RKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVL 62
           R K+KL++I NDS RK T+ KRKKG+LKK +EL TLCG+ ACA++ SPY+S  E WPS  
Sbjct: 2   RGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEPWPSRE 61

Query: 63  GVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILT 122
           GV+ V+S+F     ++++KKMV+Q+TFLRQRIAK  E+L+K+R ENR  ++  LMF  L 
Sbjct: 62  GVEEVMSKFMEFSVLDRTKKMVDQETFLRQRIAKETERLQKLRDENRNSQIRDLMFGCLK 121

Query: 123 GPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFK 158
           G   +  L   DL D++  +++ L G+ +R++  K
Sbjct: 122 GEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILK 156

BLAST of Carg16998 vs. Swiss-Prot
Match: sp|Q7XJK6|AGL36_ARATH (Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.5e-30
Identity = 80/194 (41.24%), Postives = 117/194 (60.31%), Query Frame = 0

Query: 4   KKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   ++KKM++Q+T+L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSP---EDG 183
                     DL D+   I+  L  ++ RI+S K        +     +  VSP     G
Sbjct: 122 KMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK--------ENGESLLSSVSPFPTRIG 181

Query: 184 MEFVGDDMGLSFED 195
           ++ +GD+   SF D
Sbjct: 182 VDEIGDE---SFSD 184

BLAST of Carg16998 vs. Swiss-Prot
Match: sp|Q7XJK5|AGL90_ARATH (Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 0

Query: 4   KKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPSVLG 63
           KKVKL+ I N+ +RK ++ KRK G+ KKL EL+TLCG+QACA+++SP+   PE WPS  G
Sbjct: 2   KKVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIYSPFIPVPESWPSREG 61

Query: 64  VQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQILTG 123
            ++V S+F  MP   +++KM++Q+T L +RI KA+EQLK +  ENRE +V R MF  + G
Sbjct: 62  AKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFMFDCVEG 121

Query: 124 PEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAAWAMEVVSP---EDG 183
                     DL D+   ++  L  ++ RI+S K        +     +  VSP     G
Sbjct: 122 KMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIK--------ENGESLLSSVSPFPTRIG 181

Query: 184 MEFVGDDMGLSFEDHSYNS 200
           ++ +GD+   SF D   +S
Sbjct: 182 VDEIGDE---SFSDSPIHS 189

BLAST of Carg16998 vs. TrEMBL
Match: tr|A0A1S3BPF2|A0A1S3BPF2_CUCME (agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 7.6e-77
Identity = 155/222 (69.82%), Postives = 177/222 (79.73%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKR-LLP------------XXXXQT 180
           LT  + L GL M+DLND+ W+ID+ LK I+ RIDS K+  LP                QT
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKKPSLPQXXXXXXXXXXXTTQPQT 180

Query: 181 AAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 210
           AAW ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 AAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 222

BLAST of Carg16998 vs. TrEMBL
Match: tr|A0A0A0LVS3|A0A0A0LVS3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.8e-76
Identity = 156/224 (69.64%), Postives = 177/224 (79.02%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKATYKKRK+GL+KK+SEL+TLCGI+ACAI+FSPYDS PELWPS
Sbjct: 1   MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            +GVQRVLSQFK MPEMEQSKKMVNQ+TFLRQRIAKA EQLKK+RK+NREKE+TRLMFQ 
Sbjct: 61  PIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFK---------------RLLPXXXX 180
           LT  + L GL M+DLND+ W+ID+ LK I+ RIDS K                   XXX 
Sbjct: 121 LTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIXXXXXXXXXXXXXXXXXXXXXP 180

Query: 181 QTAAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 210
           QTAAW ME+VSP+D M FVGDDM L F D +YN  N +WSNAFF
Sbjct: 181 QTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFF 224

BLAST of Carg16998 vs. TrEMBL
Match: tr|D7UAA8|D7UAA8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00300 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.0e-61
Identity = 134/239 (56.07%), Postives = 163/239 (68.20%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKGL+KK+SEL+TLCGI ACAI++SPYDS PE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAILYSPYDSQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVL+ FK MPEMEQSKKMVNQ++FLRQRIAK  EQLKK RK+NREKE+T++M+Q 
Sbjct: 61  PLGVQRVLAHFKKMPEMEQSKKMVNQESFLRQRIAKGNEQLKKQRKDNREKEITQVMYQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKR---------------------- 180
           LTG + LQ L +VDLND+ W+ID+ LK I KRI+S  +                      
Sbjct: 121 LTG-KGLQNLNIVDLNDLGWMIDQNLKDIHKRIESLNKEAQXXXXXXXXXXXXQLIKTGG 180

Query: 181 --------LLPXXXXQTAAWAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSNAFF 210
                          Q   W +++V+P + M F GDDM L F D   N+ N +W N FF
Sbjct: 181 KAQEEKPAFDSMDAIQRQQWFVDLVNPNEQMGFAGDDMMLPFGD---NNHNALWPNGFF 235

BLAST of Carg16998 vs. TrEMBL
Match: tr|B9S273|B9S273_RICCO (Mads box protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1708810 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 5.8e-61
Identity = 133/254 (52.36%), Postives = 171/254 (67.32%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI ND+ARKAT+KKRKKGL+KK+SEL+TLCG+ ACAI++SPYD+ PE+WPS
Sbjct: 1   MTRKKVKLAYISNDTARKATFKKRKKGLMKKVSELSTLCGVDACAIIYSPYDAQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            + VQRVLSQFKNMPEMEQSKKMVNQ++FLRQRI KA EQLKK RK+NREKEVT++MFQ 
Sbjct: 61  AIEVQRVLSQFKNMPEMEQSKKMVNQESFLRQRIGKANEQLKKQRKDNREKEVTQVMFQS 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKR---------------------- 180
           LTG + L  L M+DLND+ W+I++ LK I K++++  +                      
Sbjct: 121 LTG-KTLNNLNMMDLNDLGWIINQYLKDIYKKVETVSKEINRQVXXXXXXXXXXXXXXXX 180

Query: 181 -------LLPXXXXQTAA----------------WAMEVVSPEDGMEFVGDDMGLSFEDH 210
                  +      Q AA                W M++++P + M F+GD+M L F DH
Sbjct: 181 XXXPAQAIAEVAPSQQAAERQAFEVNMEAMQRQQWIMDLINPHENMGFIGDEMMLPFGDH 240

BLAST of Carg16998 vs. TrEMBL
Match: tr|A0A1Q3DF84|A0A1Q3DF84_CEPFO (SRF-TF domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34308 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.4e-60
Identity = 132/243 (54.32%), Postives = 166/243 (68.31%), Query Frame = 0

Query: 1   MARKKVKLAYILNDSARKATYKKRKKGLLKKLSELTTLCGIQACAIVFSPYDSPPELWPS 60
           M RKKVKLAYI NDSARKAT+KKRKKG++KK++EL+TLCGI ACAI++SPYD  PE+WPS
Sbjct: 1   MTRKKVKLAYITNDSARKATFKKRKKGMMKKVNELSTLCGIDACAIIYSPYDVQPEVWPS 60

Query: 61  VLGVQRVLSQFKNMPEMEQSKKMVNQDTFLRQRIAKAEEQLKKIRKENREKEVTRLMFQI 120
            LGVQRVLSQFK MPEMEQSKKMVNQ++FLRQRIAKA EQLKK RKENREKE+T++MFQ 
Sbjct: 61  PLGVQRVLSQFKKMPEMEQSKKMVNQESFLRQRIAKASEQLKKQRKENREKEMTQVMFQC 120

Query: 121 LTGPEWLQGLTMVDLNDISWVIDETLKGISKRIDSFKRLLPXXXXQTAA----------- 180
           LTG + +  LT++DLND+ W+ID+ LK   KRI+S  +        +++           
Sbjct: 121 LTG-KGMHNLTIMDLNDLGWIIDQHLKETDKRIESLTKGTQSQAISSSSTVAPSPPDEML 180

Query: 181 -----------------------WAMEVVSPEDGMEFVGDDMGLSFEDHSYNSENVIWSN 210
                                  W M++V+P++ M F GD++ L F D   N+ N  WSN
Sbjct: 181 GAASHLERQPFDVNMDTMQRQQPWYMDLVNPQEHMGFGGDEIILPFVD---NNHNGFWSN 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023530040.13.4e-10595.71agamous-like MADS-box protein AGL80 [Cucurbita pepo subsp. pepo][more]
XP_023002939.11.1e-10392.86agamous-like MADS-box protein AGL80 [Cucurbita maxima][more]
XP_022931692.11.2e-10294.76agamous-like MADS-box protein AGL80 [Cucurbita moschata][more]
XP_008450513.11.1e-7669.82PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis melo][more]
XP_004135760.15.7e-7669.64PREDICTED: agamous-like MADS-box protein AGL80 [Cucumis sativus] >KGN65990.1 hyp... [more]
Match NameE-valueIdentityDescription
AT5G48670.12.7e-4861.04AGAMOUS-like 80[more]
AT5G26630.11.5e-3850.00MADS-box transcription factor family protein[more]
AT1G65300.19.1e-3648.68AGAMOUS-like 38[more]
AT1G65330.11.3e-3448.39MADS-box transcription factor family protein[more]
AT5G26650.11.4e-3141.24AGAMOUS-like 36[more]
Match NameE-valueIdentityDescription
sp|Q9FJK3|AGL80_ARATH4.9e-4761.04Agamous-like MADS-box protein AGL80 OS=Arabidopsis thaliana OX=3702 GN=AGL80 PE=... [more]
sp|Q7XJK8|PHE2_ARATH1.6e-3448.68MADS-box transcription factor PHERES 2 OS=Arabidopsis thaliana OX=3702 GN=PHE2 P... [more]
sp|O80805|PHE1_ARATH2.4e-3348.39MADS-box transcription factor PHERES 1 OS=Arabidopsis thaliana OX=3702 GN=PHE1 P... [more]
sp|Q7XJK6|AGL36_ARATH2.5e-3041.24Agamous-like MADS-box protein AGL36 OS=Arabidopsis thaliana OX=3702 GN=AGL36 PE=... [more]
sp|Q7XJK5|AGL90_ARATH1.6e-2939.70Agamous-like MADS-box protein AGL90 OS=Arabidopsis thaliana OX=3702 GN=AGL90 PE=... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BPF2|A0A1S3BPF2_CUCME7.6e-7769.82agamous-like MADS-box protein AGL80 OS=Cucumis melo OX=3656 GN=LOC103492094 PE=4... [more]
tr|A0A0A0LVS3|A0A0A0LVS3_CUCSA3.8e-7669.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560740 PE=4 SV=1[more]
tr|D7UAA8|D7UAA8_VITVI2.0e-6156.07Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00300 PE=4 SV=... [more]
tr|B9S273|B9S273_RICCO5.8e-6152.36Mads box protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1708810 PE=4 SV=1[more]
tr|A0A1Q3DF84|A0A1Q3DF84_CEPFO6.4e-6054.32SRF-TF domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_3... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000987core promoter proximal region sequence-specific DNA binding
GO:0000982transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033897MADS_SRF-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000987 core promoter proximal region sequence-specific DNA binding
molecular_function GO:0000982 transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16998-RACarg16998-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 87..114
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..158
NoneNo IPR availablePANTHERPTHR11945:SF355AGAMOUS-LIKE MADS-BOX PROTEIN AGL36-RELATEDcoord: 1..158
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 36.16
coord: 23..38
score: 60.22
coord: 38..59
score: 26.33
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 9.3E-24
score: 94.9
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 11..52
e-value: 7.7E-17
score: 60.4
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..49
score: 16.918
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..95
e-value: 2.3E-13
score: 51.9
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 1..85
IPR033897MADS SRF-likeCDDcd00266MADS_SRF_likecoord: 2..85
e-value: 2.1466E-19
score: 78.4559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg16998Cucurbita maxima (Rimu)carcmaB0651
Carg16998Cucurbita moschata (Rifu)carcmoB0632