Csa1G515990 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G515990
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ring finger protein, putative; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
Location	Chr1 : 18072568 .. 18073119 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

mRNA sequence

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Coding sequence (CDS)

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Protein sequence

MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS*

Homology

[Close]

BLAST of Csa1G515990 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16
Identity = 54/166 (32.53%), Postives = 72/166 (43.37%), Query Frame = 1


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID-GTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of Csa1G515990 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.9e-15
Identity = 57/165 (34.55%), Postives = 70/165 (42.42%), Query Frame = 1


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW----NRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKN--------ADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G   + K+         DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKK-IGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of Csa1G515990 vs. Swiss-Prot
Match: ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-14
Identity = 47/154 (30.52%), Postives = 69/154 (44.81%), Query Frame = 1


Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQ--RNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Csa1G515990 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 55/169 (32.54%), Postives = 76/169 (44.97%), Query Frame = 1


Query: 13  PPPPPPPDE------LPVDVLSTLDLDFLNFAGLSALALMFLY-----FVFTCCERKYWN 72
           PPPPPPP         P    S  +   L  A +  LA  FL      FV  CC    W+
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLN--WH 75

Query: 73  RNGDIEGGRLPTVTMDESPAS-ETEDSPRRRPSSRAVISTRLFQYGVGGGVIGK------ 132
           +   I+  R    + D++P    +     R     A+ +  +F++     V G+      
Sbjct: 76  Q---IDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKN 135

Query: 133 NADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           + +CS+CL+EF E E  R++P C HVFH  CID WL    NCP+CR+ V
Sbjct: 136 SQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Csa1G515990 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 53/160 (33.12%), Postives = 76/160 (47.50%), Query Frame = 1


Query: 15  PPPPPDELPVDVLSTLDLDF----LNFAGL--SALALMFLYFVFTCCERKYWNRNGDIEG 74
           PPPPP     D  S+    F    +   G+  SAL L+  Y + +    KY +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPTVTMDESPASETEDSPRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
                 T++ +   E   S  +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  SE----TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD-GSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of Csa1G515990 vs. TrEMBL
Match: A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.4e-99
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Csa1G515990 vs. TrEMBL
Match: A0A0K9QE99_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194380 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 9   PTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG 68
           P   PPPPPPP+++   +++T+ +  ++F  LS   ++ L   FT   R     + ++  
Sbjct: 40  PPPPPPPPPPPNQIAPFLIATVCILGISFLLLSTCTII-LRLRFTSRRRGVSRGSTNVS- 99

Query: 69  GRLPTVTMDESPASETEDSPRRRPSS----RAVI-STRLFQYGVGGG--VIGKNADCSIC 128
              PT+  DE+ +    D P    ++    ++VI S   F+Y    G  V G +  CS+C
Sbjct: 100 ---PTINDDENGSGSVVDHPIWHITTIGLQQSVIDSITAFKYKKIDGFFVEGSDLSCSVC 159

Query: 129 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLV 169
           L +F EG+  R+LPKC H FH  CID WL + +NCP+CR+P+   +V
Sbjct: 160 LTDFEEGDDLRLLPKCSHAFHVSCIDTWLKSHKNCPLCRAPIVNEIV 201

[Close]

BLAST of Csa1G515990 vs. TrEMBL
Match: A0A078BYK5_BRANA (BnaA10g21890D protein OS=Brassica napus GN=BnaA10g21890D PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-17
Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = 1


Query: 10  TTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGG 69
           T  PPPPPPP +  + V+ +  +  +    L    ++FLY   T   R+   R+      
Sbjct: 21  TYPPPPPPPPPQRDLSVIVSTSICIIGSVLLFLFLMVFLYLYITKSSRR---RSSPSAVA 80

Query: 70  RLPTVTMDESPASETEDSPRRRPSSR--------------AVISTRLFQYGVGGGVIGKN 129
            + + T      +E ED+                      A+ S  +  +  G GVI   
Sbjct: 81  PVVSTTRRREEENEEEDAGGGGERDHHHFWSIATLGLHRSAIDSITVVVFKKGEGVID-G 140

Query: 130 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVY 165
            DCS+CL EF EGE  R+LPKC H FH  CID WL + +NCP+CR+PV+
Sbjct: 141 TDCSVCLSEFEEGEGVRLLPKCSHAFHVSCIDTWLLSHKNCPLCRAPVF 185

[Close]

BLAST of Csa1G515990 vs. TrEMBL
Match: D7M2W5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_350245 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.0e-17
Identity = 57/168 (33.93%), Postives = 79/168 (47.02%), Query Frame = 1


Query: 11  TMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGR 70
           T PPPPPPP +  + +L    +  +    L    ++FLY   T   +  WN         
Sbjct: 29  TSPPPPPPPPQRELSLLLPTSICVVGSVILFLFLVVFLYLYIT---QPRWNSAA------ 88

Query: 71  LPTVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKN 130
             TVT  ++   E ED    R  S                A+ S  +  +  G G+I   
Sbjct: 89  --TVTPGDTGQRENEDETEERDHSDFHHVWRIPTVGLHRSAINSITVVGFKKGEGIID-G 148

Query: 131 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
            +CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 149 TECSVCLNEFEEDESLRLLPKCSHAFHINCIDTWLLSHKNCPLCRAPV 184

[Close]

BLAST of Csa1G515990 vs. TrEMBL
Match: A0A022R6T4_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019765mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 63/164 (38.41%), Postives = 84/164 (51.22%), Query Frame = 1


Query: 11  TMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFV-FTCCERKYW------NRN 70
           T PP PPPP  L    + T+ +  L   G + L L +L    +  C R+        N +
Sbjct: 13  TPPPSPPPPPSLTNHHIPTVLILMLCVLGGAFLVLSYLTVRRYRNCRRRNSPPSSTANAD 72

Query: 71  GDIEGGRLPTVTMDESPASETEDSP---RRRPSSRAVI-STRLFQYGVGGGVIGKNADCS 130
              E   L     D  PA+  +      R    SR++I S  +F Y  GGG+I +  DCS
Sbjct: 73  SPAEDYFLDE---DHGPAATADHHIWYIRTSGLSRSLIDSISVFDYKKGGGLI-ECVDCS 132

Query: 131 ICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           +CL+EF E E  R+LPKC H FH  CID WL + +NCPVCR+PV
Sbjct: 133 VCLNEFQENETLRLLPKCSHAFHVPCIDTWLTSHKNCPVCRAPV 172

[Close]

BLAST of Csa1G515990 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-18
Identity = 54/166 (32.53%), Postives = 72/166 (43.37%), Query Frame = 1


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID-GTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of Csa1G515990 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 1


Query: 41  SALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDES-------PASETEDSP----R 100
           S +  +FL  +   C + Y+ R   I   R    +M+E+       PA    D P    R
Sbjct: 131 SIITTLFLLTLLVLCFKFYYRRRRSITTSR--RWSMEEARNWDFDGPAPVIVDHPIWHIR 190

Query: 101 RRPSSRAVIST-RLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDR 160
               +  VIS+ ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID 
Sbjct: 191 TIGLNPTVISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDT 250

Query: 161 WLPNERNCPVCRSPV 164
           WL +  NCP+CR+P+
Sbjct: 251 WLRSHTNCPLCRAPI 262

[Close]

BLAST of Csa1G515990 vs. TAIR10
Match: AT4G17905.1 (AT4G17905.1 RING/U-box superfamily protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.9e-16
Identity = 57/165 (34.55%), Postives = 70/165 (42.42%), Query Frame = 1


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW----NRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKN--------ADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G   + K+         DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKK-IGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of Csa1G515990 vs. TAIR10
Match: AT2G27940.1 (AT2G27940.1 RING/U-box superfamily protein)

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-15
Identity = 47/154 (30.52%), Postives = 69/154 (44.81%), Query Frame = 1


Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQ--RNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of Csa1G515990 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-15
Identity = 55/169 (32.54%), Postives = 76/169 (44.97%), Query Frame = 1


Query: 13  PPPPPPPDE------LPVDVLSTLDLDFLNFAGLSALALMFLY-----FVFTCCERKYWN 72
           PPPPPPP         P    S  +   L  A +  LA  FL      FV  CC    W+
Sbjct: 16  PPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLN--WH 75

Query: 73  RNGDIEGGRLPTVTMDESPAS-ETEDSPRRRPSSRAVISTRLFQYGVGGGVIGK------ 132
           +   I+  R    + D++P    +     R     A+ +  +F++     V G+      
Sbjct: 76  Q---IDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKN 135

Query: 133 NADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           + +CS+CL+EF E E  R++P C HVFH  CID WL    NCP+CR+ V
Sbjct: 136 SQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Csa1G515990 vs. NCBI nr
Match: gi|778661462|ref|XP_004151031.2| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 370.2 bits (949), Expect = 2.0e-99
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of Csa1G515990 vs. NCBI nr
Match: gi|659115462|ref|XP_008457570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-83
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 1


Query: 12  MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 71
           MP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+WNRNGDIEGG+L
Sbjct: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60

Query: 72  PTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131
           P+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120

Query: 132 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           RMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 162

[Close]

BLAST of Csa1G515990 vs. NCBI nr
Match: gi|747098979|ref|XP_011097526.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Sesamum indicum])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 1


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG-GRL 72
           PPPP PP   P     T  +  +    L  LA +FL+  +    +   +R G+  G G L
Sbjct: 35  PPPPQPPPFPP----KTHQISTIFILMLCVLAAVFLFLSYLTVRKFRNSRRGNSAGNGNL 94

Query: 73  PTVTMDESPASETEDS-----PRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFT 132
               +DE  A   +           P S A+ S  +F+Y  G G+I +  DCSICL+EF 
Sbjct: 95  TEDFIDEHQAPLVDHPIWYIRTVGLPQS-AIDSISVFKYKKGDGLI-EGCDCSICLNEFQ 154

Query: 133 EGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           E E  R+LPKC H FH  CID WL + +NCPVCR+P+ +
Sbjct: 155 ENESLRLLPKCSHAFHVLCIDTWLRSHKNCPVCRAPILI 187

[Close]

BLAST of Csa1G515990 vs. NCBI nr
Match: gi|902145919|gb|KNA05013.1| (hypothetical protein SOVF_194380 [Spinacia oleracea])

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-17
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1


Query: 9   PTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG 68
           P   PPPPPPP+++   +++T+ +  ++F  LS   ++ L   FT   R     + ++  
Sbjct: 40  PPPPPPPPPPPNQIAPFLIATVCILGISFLLLSTCTII-LRLRFTSRRRGVSRGSTNVS- 99

Query: 69  GRLPTVTMDESPASETEDSPRRRPSS----RAVI-STRLFQYGVGGG--VIGKNADCSIC 128
              PT+  DE+ +    D P    ++    ++VI S   F+Y    G  V G +  CS+C
Sbjct: 100 ---PTINDDENGSGSVVDHPIWHITTIGLQQSVIDSITAFKYKKIDGFFVEGSDLSCSVC 159

Query: 129 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLV 169
           L +F EG+  R+LPKC H FH  CID WL + +NCP+CR+P+   +V
Sbjct: 160 LTDFEEGDDLRLLPKCSHAFHVSCIDTWLKSHKNCPLCRAPIVNEIV 201

[Close]

BLAST of Csa1G515990 vs. NCBI nr
Match: gi|297807071|ref|XP_002871419.1| (hypothetical protein ARALYDRAFT_350245 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 96.3 bits (238), Expect = 5.7e-17
Identity = 57/168 (33.93%), Postives = 79/168 (47.02%), Query Frame = 1


Query: 11  TMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGR 70
           T PPPPPPP +  + +L    +  +    L    ++FLY   T   +  WN         
Sbjct: 29  TSPPPPPPPPQRELSLLLPTSICVVGSVILFLFLVVFLYLYIT---QPRWNSAA------ 88

Query: 71  LPTVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKN 130
             TVT  ++   E ED    R  S                A+ S  +  +  G G+I   
Sbjct: 89  --TVTPGDTGQRENEDETEERDHSDFHHVWRIPTVGLHRSAINSITVVGFKKGEGIID-G 148

Query: 131 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
            +CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 149 TECSVCLNEFEEDESLRLLPKCSHAFHINCIDTWLLSHKNCPLCRAPV 184

The following BLAST results are available for this feature:

BLAST of Csa1G515990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL55_ARATH	1.6e-16	32.53	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1	[more]
ATL53_ARATH	6.9e-15	34.55	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2	[more]
ATL57_ARATH	4.5e-14	30.52	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1	[more]
ATL1_ARATH	1.3e-13	32.54	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1	[more]
ATL52_ARATH	1.7e-13	33.13	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1	[more]

BLAST of Csa1G515990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0H1_CUCSA	1.4e-99	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1	[more]
A0A0K9QE99_SPIOL	3.0e-17	34.13	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194380 PE=4 SV=1	[more]
A0A078BYK5_BRANA	4.0e-17	33.14	BnaA10g21890D protein OS=Brassica napus GN=BnaA10g21890D PE=4 SV=1	[more]
D7M2W5_ARALL	4.0e-17	33.93	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A022R6T4_ERYGU	3.3e-16	38.41	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a019765mg PE=4 SV=1	[more]

BLAST of Csa1G515990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10380.1	9.3e-18	32.53	RING/U-box superfamily protein	[more]
AT4G33565.1	1.2e-17	37.78	RING/U-box superfamily protein	[more]
AT4G17905.1	3.9e-16	34.55	RING/U-box superfamily protein	[more]
AT2G27940.1	2.5e-15	30.52	RING/U-box superfamily protein	[more]
AT1G04360.1	7.4e-15	32.54	RING/U-box superfamily protein	[more]

BLAST of Csa1G515990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778661462\|ref\|XP_004151031.2\|	2.0e-99	100.00	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
gi\|659115462\|ref\|XP_008457570.1\|	2.0e-83	90.12	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]
gi\|747098979\|ref\|XP_011097526.1\|	1.1e-17	37.74	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Sesamum indicum]	[more]
gi\|902145919\|gb\|KNA05013.1\|	4.3e-17	34.13	hypothetical protein SOVF_194380 [Spinacia oleracea]	[more]
gi\|297807071\|ref\|XP_002871419.1\|	5.7e-17	33.93	hypothetical protein ARALYDRAFT_350245 [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G515990.1	Csa1G515990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 score: 1.2
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 118..160 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 114..163 score: 3.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 13..163 score: 4.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 112..166 score: 1.35

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G515990	Cla008242	Watermelon (97103) v1	cuwmB021
Csa1G515990	ClCG03G001510	Watermelon (Charleston Gray)	cuwcgB047
Csa1G515990	Cla97C03G052450	Watermelon (97103) v2	cuwmbB043
Csa1G515990	Bhi08G000525	Wax gourd	cuwgoB048
Csa1G515990	CSPI01G23060	Wild cucumber (PI 183967)	cpicuB001
Csa1G515990	CmaCh13G001280	Cucurbita maxima (Rimu)	cmacuB219
Csa1G515990	CmoCh13G001250	Cucurbita moschata (Rifu)	cmocuB204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G515990	Cucurbita pepo (Zucchini)	cpecuB266
Csa1G515990	Cucurbita pepo (Zucchini)	cpecuB507
Csa1G515990	Cucurbita pepo (Zucchini)	cpecuB534
Csa1G515990	Cucurbita pepo (Zucchini)	cpecuB702
Csa1G515990	Bottle gourd (USVL1VR-Ls)	culsiB001
Csa1G515990	Bottle gourd (USVL1VR-Ls)	culsiB030
Csa1G515990	Cucumber (Gy14) v2	cgybcuB002
Csa1G515990	Cucumber (Gy14) v2	cgybcuB099
Csa1G515990	Cucumber (Gy14) v2	cgybcuB156
Csa1G515990	Cucumber (Gy14) v2	cgybcuB244
Csa1G515990	Melon (DHL92) v3.6.1	cumedB023
Csa1G515990	Melon (DHL92) v3.6.1	cumedB007
Csa1G515990	Melon (DHL92) v3.6.1	cumedB058
Csa1G515990	Silver-seed gourd	carcuB0359
Csa1G515990	Silver-seed gourd	carcuB0171
Csa1G515990	Silver-seed gourd	carcuB0330
Csa1G515990	Silver-seed gourd	carcuB0412
Csa1G515990	Silver-seed gourd	carcuB0471
Csa1G515990	Silver-seed gourd	carcuB1010
Csa1G515990	Watermelon (97103) v2	cuwmbB015
Csa1G515990	Watermelon (97103) v2	cuwmbB056
Csa1G515990	Watermelon (97103) v2	cuwmbB027
Csa1G515990	Wax gourd	cuwgoB018
Csa1G515990	Cucumber (Chinese Long) v2	cucuB020
Csa1G515990	Cucumber (Chinese Long) v2	cucuB025
Csa1G515990	Cucumber (Chinese Long) v2	cucuB039
Csa1G515990	Cucumber (Gy14) v1	cgycuB053
Csa1G515990	Cucumber (Gy14) v1	cgycuB151
Csa1G515990	Cucumber (Gy14) v1	cgycuB267
Csa1G515990	Cucurbita maxima (Rimu)	cmacuB427
Csa1G515990	Cucurbita maxima (Rimu)	cmacuB538
Csa1G515990	Cucurbita maxima (Rimu)	cmacuB580
Csa1G515990	Cucurbita maxima (Rimu)	cmacuB812
Csa1G515990	Cucurbita moschata (Rifu)	cmocuB416
Csa1G515990	Cucurbita moschata (Rifu)	cmocuB568
Csa1G515990	Cucurbita moschata (Rifu)	cmocuB804
Csa1G515990	Melon (DHL92) v3.5.1	cumeB028
Csa1G515990	Melon (DHL92) v3.5.1	cumeB082
Csa1G515990	Watermelon (Charleston Gray)	cuwcgB004
Csa1G515990	Watermelon (Charleston Gray)	cuwcgB031
Csa1G515990	Watermelon (97103) v1	cuwmB004
Csa1G515990	Watermelon (97103) v1	cuwmB064
Csa1G515990	Watermelon (97103) v1	cuwmB069