CSPI01G23060 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G23060
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRing finger protein, putative
LocationChr1 : 18718390 .. 18718911 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

mRNA sequence

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Coding sequence (CDS)

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA
Homology
[Close]
BLAST of CSPI01G23060 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 1 

Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID-GTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]
BLAST of CSPI01G23060 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 57/165 (34.55%), Postives = 71/165 (43.03%), Query Frame = 1 

Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW----NRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKN--------ADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G   + K+         DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKK-IGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]
BLAST of CSPI01G23060 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-13
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1 

Query: 15  PPPPPDELPVDVLSTLDLDF----LNFAGL--SALALMFLYFVFTCCERKYWNRNGDIEG 74
           PPPPP     D  S+    F    +   G+  SAL L+  Y + +    KY +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPTVTMDESPASETEDSPRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
                 T++ +   E   S  +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  SE----TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD-GSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]
BLAST of CSPI01G23060 vs. Swiss-Prot
Match: ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-13
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 1 

Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQ--RNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]
BLAST of CSPI01G23060 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-13
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 99  STRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPV 158
           S  +++Y    G + +++DCS+CL EF E E  R+LPKC H FH  CID WL +  NCP+
Sbjct: 141 SITVYKYRKMDGFV-ESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPL 200

Query: 159 CRS 162
           CR+
Sbjct: 201 CRA 202

[Close]
BLAST of CSPI01G23060 vs. TrEMBL
Match: A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.6e-98
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]
BLAST of CSPI01G23060 vs. TrEMBL
Match: A0A0K9QE99_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194380 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.6e-16
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1 

Query: 9   PTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG 68
           P   PPPPPPP+++   +++T+ +  ++F  LS   ++ L   FT   R     + ++  
Sbjct: 40  PPPPPPPPPPPNQIAPFLIATVCILGISFLLLSTCTII-LRLRFTSRRRGVSRGSTNVS- 99

Query: 69  GRLPTVTMDESPASETEDSPRRRPSS----RAVI-STRLFQYGVGGG--VIGKNADCSIC 128
              PT+  DE+ +    D P    ++    ++VI S   F+Y    G  V G +  CS+C
Sbjct: 100 ---PTINDDENGSGSVVDHPIWHITTIGLQQSVIDSITAFKYKKIDGFFVEGSDLSCSVC 159

Query: 129 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLV 169
           L +F EG+  R+LPKC H FH  CID WL + +NCP+CR+P+   +V
Sbjct: 160 LTDFEEGDDLRLLPKCSHAFHVSCIDTWLKSHKNCPLCRAPIVNEIV 201

[Close]
BLAST of CSPI01G23060 vs. TrEMBL
Match: A0A078BYK5_BRANA (BnaA10g21890D protein OS=Brassica napus GN=BnaA10g21890D PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.3e-16
Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = 1 

Query: 10  TTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGG 69
           T  PPPPPPP +  + V+ +  +  +    L    ++FLY   T   R+   R+      
Sbjct: 21  TYPPPPPPPPPQRDLSVIVSTSICIIGSVLLFLFLMVFLYLYITKSSRR---RSSPSAVA 80

Query: 70  RLPTVTMDESPASETEDSPRRRPSSR--------------AVISTRLFQYGVGGGVIGKN 129
            + + T      +E ED+                      A+ S  +  +  G GVI   
Sbjct: 81  PVVSTTRRREEENEEEDAGGGGERDHHHFWSIATLGLHRSAIDSITVVVFKKGEGVID-G 140

Query: 130 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVY 165
            DCS+CL EF EGE  R+LPKC H FH  CID WL + +NCP+CR+PV+
Sbjct: 141 TDCSVCLSEFEEGEGVRLLPKCSHAFHVSCIDTWLLSHKNCPLCRAPVF 185

[Close]
BLAST of CSPI01G23060 vs. TrEMBL
Match: D7M2W5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_350245 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.4e-16
Identity = 57/168 (33.93%), Postives = 79/168 (47.02%), Query Frame = 1 

Query: 11  TMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGR 70
           T PPPPPPP +  + +L    +  +    L    ++FLY   T   +  WN         
Sbjct: 29  TSPPPPPPPPQRELSLLLPTSICVVGSVILFLFLVVFLYLYIT---QPRWNSAA------ 88

Query: 71  LPTVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKN 130
             TVT  ++   E ED    R  S                A+ S  +  +  G G+I   
Sbjct: 89  --TVTPGDTGQRENEDETEERDHSDFHHVWRIPTVGLHRSAINSITVVGFKKGEGIID-G 148

Query: 131 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
            +CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 149 TECSVCLNEFEEDESLRLLPKCSHAFHINCIDTWLLSHKNCPLCRAPV 184

[Close]
BLAST of CSPI01G23060 vs. TrEMBL
Match: A0A0D2N1R7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G214600 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 49/157 (31.21%), Postives = 84/157 (53.50%), Query Frame = 1 

Query: 22  LPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP--TVTMDES 81
           +P+ ++  + + FL ++ L    +  L  +   C    W+ + DIE  RLP     +D +
Sbjct: 13  IPIIIIILIFMVFLVWSCLYFTVVFILMLLHCFC----WDIDEDIEN-RLPRYVAAVDHT 72

Query: 82  PASET---EDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPK 141
             S +   ++ PR       +    + +Y + G +   +ADC ICL+EF +G+ CR+LP 
Sbjct: 73  MRSRSTLLDEVPR------PITVGTVVKYKIEGEIESCHADCVICLEEFKDGDTCRVLPN 132

Query: 142 CKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           CKH++H+ CID+WL  +  CP+CR  VY   + S P+
Sbjct: 133 CKHMYHQLCIDKWLVKDEVCPLCRGSVYTLELTSSPT 158

[Close]
BLAST of CSPI01G23060 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-18
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 41  SALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDES-------PASETEDSP----R 100
           S +  +FL  +   C + Y+ R   I   R    +M+E+       PA    D P    R
Sbjct: 131 SIITTLFLLTLLVLCFKFYYRRRRSITTSR--RWSMEEARNWDFDGPAPVIVDHPIWHIR 190

Query: 101 RRPSSRAVIST-RLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDR 160
               +  VIS+ ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID 
Sbjct: 191 TIGLNPTVISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDT 250

Query: 161 WLPNERNCPVCRSPV 164
           WL +  NCP+CR+P+
Sbjct: 251 WLRSHTNCPLCRAPI 262

[Close]
BLAST of CSPI01G23060 vs. TAIR10
Match: AT5G10380.1 (AT5G10380.1 RING/U-box superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 7.9e-17
Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 1 

Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID-GTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]
BLAST of CSPI01G23060 vs. TAIR10
Match: AT4G17905.1 (AT4G17905.1 RING/U-box superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.9e-15
Identity = 57/165 (34.55%), Postives = 71/165 (43.03%), Query Frame = 1 

Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW----NRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKN--------ADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G   + K+         DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKK-IGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]
BLAST of CSPI01G23060 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-14
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 1 

Query: 15  PPPPPDELPVDVLSTLDLDF----LNFAGL--SALALMFLYFVFTCCERKYWNRNGDIEG 74
           PPPPP     D  S+    F    +   G+  SAL L+  Y + +    KY +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPTVTMDESPASETEDSPRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
                 T++ +   E   S  +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  SE----TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD-GSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]
BLAST of CSPI01G23060 vs. TAIR10
Match: AT2G27940.1 (AT2G27940.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-14
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 1 

Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQ--RNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]
BLAST of CSPI01G23060 vs. NCBI nr
Match: gi|778661462|ref|XP_004151031.2| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.3e-98
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1 

Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]
BLAST of CSPI01G23060 vs. NCBI nr
Match: gi|659115462|ref|XP_008457570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 315.8 bits (808), Expect = 4.6e-83
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 1 

Query: 12  MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 71
           MP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+WNRNGDIEGG+L
Sbjct: 1   MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQL 60

Query: 72  PTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 131
           P+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC
Sbjct: 61  PSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 120

Query: 132 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 174
           RMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 RMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 162

[Close]
BLAST of CSPI01G23060 vs. NCBI nr
Match: gi|747098979|ref|XP_011097526.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Sesamum indicum])

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-17
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 1 

Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG-GRL 72
           PPPP PP   P     T  +  +    L  LA +FL+  +    +   +R G+  G G L
Sbjct: 35  PPPPQPPPFPP----KTHQISTIFILMLCVLAAVFLFLSYLTVRKFRNSRRGNSAGNGNL 94

Query: 73  PTVTMDESPASETEDS-----PRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFT 132
               +DE  A   +           P S A+ S  +F+Y  G G+I +  DCSICL+EF 
Sbjct: 95  TEDFIDEHQAPLVDHPIWYIRTVGLPQS-AIDSISVFKYKKGDGLI-EGCDCSICLNEFQ 154

Query: 133 EGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           E E  R+LPKC H FH  CID WL + +NCPVCR+P+ +
Sbjct: 155 ENESLRLLPKCSHAFHVLCIDTWLRSHKNCPVCRAPILI 187

[Close]
BLAST of CSPI01G23060 vs. NCBI nr
Match: gi|729310756|ref|XP_010530037.1| (PREDICTED: putative RING-H2 finger protein ATL53 [Tarenaya hassleriana])

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 57/159 (35.85%), Postives = 76/159 (47.80%), Query Frame = 1 

Query: 15  PPPPPDELPVD-VLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPT 74
           PPPPP +LP D V S  +L  L  + +  LA  FL   +     KY     +  G     
Sbjct: 38  PPPPPYDLPNDDVSSNPNLSPLVISIIGILASAFLLVSYYTLISKYCGNATEFSGIERSD 97

Query: 75  VTMDESPASETE-------DSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFT 134
             +DES  +  E       + P        +   R F+Y     ++    DCSICL EF 
Sbjct: 98  RNLDESAENSVENRNPFAHEPPNAGLDDALIKLIRHFKYKKQDRLVINTTDCSICLGEFN 157

Query: 135 EGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           E E  R+LPKC HVFH  C+DRWL +  NCP+CR+ + V
Sbjct: 158 EEESLRILPKCSHVFHVACVDRWLKSHSNCPLCRANITV 196

[Close]
BLAST of CSPI01G23060 vs. NCBI nr
Match: gi|902145919|gb|KNA05013.1| (hypothetical protein SOVF_194380 [Spinacia oleracea])

HSP 1 Score: 93.6 bits (231), Expect = 3.7e-16
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1 

Query: 9   PTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEG 68
           P   PPPPPPP+++   +++T+ +  ++F  LS   ++ L   FT   R     + ++  
Sbjct: 40  PPPPPPPPPPPNQIAPFLIATVCILGISFLLLSTCTII-LRLRFTSRRRGVSRGSTNVS- 99

Query: 69  GRLPTVTMDESPASETEDSPRRRPSS----RAVI-STRLFQYGVGGG--VIGKNADCSIC 128
              PT+  DE+ +    D P    ++    ++VI S   F+Y    G  V G +  CS+C
Sbjct: 100 ---PTINDDENGSGSVVDHPIWHITTIGLQQSVIDSITAFKYKKIDGFFVEGSDLSCSVC 159

Query: 129 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLV 169
           L +F EG+  R+LPKC H FH  CID WL + +NCP+CR+P+   +V
Sbjct: 160 LTDFEEGDDLRLLPKCSHAFHVSCIDTWLKSHKNCPLCRAPIVNEIV 201

The following BLAST results are available for this feature:
BLAST of CSPI01G23060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL55_ARATH1.4e-1532.53E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL53_ARATH3.4e-1434.55Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2[more]
ATL52_ARATH6.5e-1333.13RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL57_ARATH6.5e-1330.52RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1[more]
ATL51_ARATH8.5e-1347.62RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2[more]
BLAST of CSPI01G23060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0H1_CUCSA1.6e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1[more]
A0A0K9QE99_SPIOL2.6e-1634.13Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194380 PE=4 SV=1[more]
A0A078BYK5_BRANA3.3e-1633.14BnaA10g21890D protein OS=Brassica napus GN=BnaA10g21890D PE=4 SV=1[more]
D7M2W5_ARALL4.4e-1633.93Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
A0A0D2N1R7_GOSRA1.7e-1531.21Uncharacterized protein OS=Gossypium raimondii GN=B456_004G214600 PE=4 SV=1[more]
BLAST of CSPI01G23060 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33565.11.4e-1837.78 RING/U-box superfamily protein[more]
AT5G10380.17.9e-1732.53 RING/U-box superfamily protein[more]
AT4G17905.11.9e-1534.55 RING/U-box superfamily protein[more]
AT5G17600.13.7e-1433.13 RING/U-box superfamily protein[more]
AT2G27940.13.7e-1430.52 RING/U-box superfamily protein[more]
BLAST of CSPI01G23060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661462|ref|XP_004151031.2|2.3e-98100.00PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|659115462|ref|XP_008457570.1|4.6e-8390.12PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|747098979|ref|XP_011097526.1|4.3e-1737.74PREDICTED: E3 ubiquitin-protein ligase RING1-like [Sesamum indicum][more]
gi|729310756|ref|XP_010530037.1|1.7e-1635.85PREDICTED: putative RING-H2 finger protein ATL53 [Tarenaya hassleriana][more]
gi|902145919|gb|KNA05013.1|3.7e-1634.13hypothetical protein SOVF_194380 [Spinacia oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G23060.1CSPI01G23060.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 117..160
score: 1.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 118..159
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 118..160
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 114..163
score: 3.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 13..163
score: 4.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 112..166
score: 1.35

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G23060Cla008242Watermelon (97103) v1cpiwmB023
CSPI01G23060Csa1G515990Cucumber (Chinese Long) v2cpicuB001
CSPI01G23060MELO3C020633Melon (DHL92) v3.5.1cpimeB025
CSPI01G23060ClCG03G001510Watermelon (Charleston Gray)cpiwcgB050
CSPI01G23060CsaV3_1G034200Cucumber (Chinese Long) v3cpicucB000
CSPI01G23060Cla97C03G052450Watermelon (97103) v2cpiwmbB044
CSPI01G23060Bhi08G000525Wax gourdcpiwgoB048
CSPI01G23060CmoCh13G001250Cucurbita moschata (Rifu)cmocpiB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G23060Melon (DHL92) v3.5.1cpimeB003
CSPI01G23060Melon (DHL92) v3.5.1cpimeB008
CSPI01G23060Melon (DHL92) v3.5.1cpimeB065
CSPI01G23060Melon (DHL92) v3.5.1cpimeB084
CSPI01G23060Watermelon (Charleston Gray)cpiwcgB004
CSPI01G23060Watermelon (Charleston Gray)cpiwcgB034
CSPI01G23060Watermelon (Charleston Gray)cpiwcgB062
CSPI01G23060Watermelon (97103) v1cpiwmB004
CSPI01G23060Watermelon (97103) v1cpiwmB069
CSPI01G23060Watermelon (97103) v1cpiwmB075
CSPI01G23060Cucurbita pepo (Zucchini)cpecpiB267
CSPI01G23060Cucurbita pepo (Zucchini)cpecpiB507
CSPI01G23060Cucurbita pepo (Zucchini)cpecpiB536
CSPI01G23060Cucurbita pepo (Zucchini)cpecpiB704
CSPI01G23060Bottle gourd (USVL1VR-Ls)cpilsiB002
CSPI01G23060Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G23060Melon (DHL92) v3.6.1cpimedB007
CSPI01G23060Melon (DHL92) v3.6.1cpimedB024
CSPI01G23060Melon (DHL92) v3.6.1cpimedB057
CSPI01G23060Cucumber (Gy14) v2cgybcpiB002
CSPI01G23060Cucumber (Gy14) v2cgybcpiB097
CSPI01G23060Cucumber (Gy14) v2cgybcpiB159
CSPI01G23060Cucumber (Gy14) v2cgybcpiB252
CSPI01G23060Silver-seed gourdcarcpiB0177
CSPI01G23060Silver-seed gourdcarcpiB0336
CSPI01G23060Silver-seed gourdcarcpiB0363
CSPI01G23060Silver-seed gourdcarcpiB0415
CSPI01G23060Silver-seed gourdcarcpiB0476
CSPI01G23060Silver-seed gourdcarcpiB1034
CSPI01G23060Cucumber (Chinese Long) v3cpicucB032
CSPI01G23060Cucumber (Chinese Long) v3cpicucB037
CSPI01G23060Cucumber (Chinese Long) v3cpicucB055
CSPI01G23060Watermelon (97103) v2cpiwmbB015
CSPI01G23060Watermelon (97103) v2cpiwmbB027
CSPI01G23060Watermelon (97103) v2cpiwmbB058
CSPI01G23060Wax gourdcpiwgoB018
CSPI01G23060Wild cucumber (PI 183967)cpicpiB024
CSPI01G23060Wild cucumber (PI 183967)cpicpiB019
CSPI01G23060Wild cucumber (PI 183967)cpicpiB043
CSPI01G23060Cucumber (Gy14) v1cgycpiB053
CSPI01G23060Cucumber (Gy14) v1cgycpiB153
CSPI01G23060Cucumber (Gy14) v1cgycpiB277
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB220
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB236
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB430
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB544
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB585
CSPI01G23060Cucurbita maxima (Rimu)cmacpiB696
CSPI01G23060Cucurbita moschata (Rifu)cmocpiB223
CSPI01G23060Cucurbita moschata (Rifu)cmocpiB420
CSPI01G23060Cucurbita moschata (Rifu)cmocpiB573
CSPI01G23060Cucurbita moschata (Rifu)cmocpiB811
CSPI01G23060Cucumber (Chinese Long) v2cpicuB028
CSPI01G23060Cucumber (Chinese Long) v2cpicuB032
CSPI01G23060Cucumber (Chinese Long) v2cpicuB047