Cla008242 (gene) Watermelon (97103) v1

Overview
NameCla008242
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRing H2 finger protein (AHRD V1 **-- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr3 : 1423011 .. 1423496 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCACCGCCACCTCCGGCCGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTTTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGGGATATCGAAGGCGGACGGCCACCGTCGTCGGGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

mRNA sequence

ATGCCTCCACCGCCACCTCCGGCCGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTTTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGGGATATCGAAGGCGGACGGCCACCGTCGTCGGGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

Coding sequence (CDS)

ATGCCTCCACCGCCACCTCCGGCCGAGTTATCCGTCGACGTTCTCTCCACTCTAGATCTCGACTTTTTAAATTTCGCAGGACTGTCGGCTCTGGCTTTGATGATCGTCTACTTCATTTTCACCTGTTACGAACACAAATACTGGAATCGAAACGGGGATATCGAAGGCGGACGGCCACCGTCGTCGGGGACGGTGGCTGAACCTCCGACTTCAGAGGCAGGTGATTCTTCTTCAAGAAGACGGGCGTCGACGGCGGTGATTTCGACGAAGCTGTTTCAGTACGGAGAGGGAGGATTGGTAGGGAAAAATGGGGATTGTTCGATTTGTTTGGATGAATTTACAGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAACGAACGCCATTGTCCTCTTTGTCGTTCCCCTGTTCATGTTCGCATCATTTATTCAAATCCCTCTTGA

Protein sequence

MPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS
Homology
[Close]
BLAST of Cla008242 vs. Swiss-Prot
Match: ATL55_ARATH (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 56/161 (34.78%), Postives = 79/161 (49.07%), Query Frame = 1 

Query: 2   PPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPS 61
           PPPPPP ELS+ + +++ +      G   L L +V+F+   Y H    R        P  
Sbjct: 30  PPPPPPRELSLLLPTSICV-----VGSIILFLFLVFFL---YLHITQQRRISAASVTPGD 89

Query: 62  SGTVAEPPTSEAGDSSS-----------RRRASTAVISTKLFQYGEGGLVGKNGDCSICL 121
           +    +   +E  D S              R++   I+   F+ GEG + G   +CS+CL
Sbjct: 90  TNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGT--ECSVCL 149

Query: 122 DEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPV 152
           +EF E E  R+LPKC H FH  CID WL + ++CPLCR+PV
Sbjct: 150 NEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]
BLAST of Cla008242 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.4e-15
Identity = 53/160 (33.12%), Postives = 76/160 (47.50%), Query Frame = 1 

Query: 3   PPPPPAELSVDVLSTLDLDF----LNFAGL--SALALMIVYFIFTCYEHKYWNRNGDIEG 62
           PPPPP+    D  S+    F    +   G+  SAL L+  Y + + Y H++   +     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS----- 94

Query: 63  GRPPSSGTVAEPPTSEAGDSSSRRRASTA-------VISTKLFQYGEGGLVGKNGDCSIC 122
               SS T+      E   SS++R ++         + S  +++Y  G       DCS+C
Sbjct: 95  ----SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVC 154

Query: 123 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 150
           L EF E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]
BLAST of Cla008242 vs. Swiss-Prot
Match: ATL53_ARATH (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-13
Identity = 53/164 (32.32%), Postives = 73/164 (44.51%), Query Frame = 1 

Query: 3   PPPPPAE--LSVDVLSTLDLDFLNFA--GLSALALMIV--YFIFTCYEHKYWNRNGDIEG 62
           PPP   E  L+  V S  +L  L  A  G+ A A ++   Y + + Y           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 63  GRPPSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-------EGGLVGKNGDCSIC 122
           GR      V  P   +  D  +   ++  +  T + + G       + G      DCSIC
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSIC 158

Query: 123 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHV 154
           L EF E E  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Sbjct: 159 LGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]
BLAST of Cla008242 vs. Swiss-Prot
Match: ATL33_ARATH (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 7.8e-13
Identity = 50/160 (31.25%), Postives = 69/160 (43.12%), Query Frame = 1 

Query: 2   PPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPS 61
           PPPP PA      L+ L L F+  A ++  AL+   F            NG     R  S
Sbjct: 46  PPPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFF-----------NGPCSSSRRNS 105

Query: 62  SGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKN-------GDCSICLDEFT 121
           S +     TS + D +      T  I+        GG   K+        +CS+CL  FT
Sbjct: 106 SSS----RTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFT 165

Query: 122 EGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVR 155
           + +  R L +CKH FH  CI+ WL +  +CP+CR+ V V+
Sbjct: 166 DSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVK 190

[Close]
BLAST of Cla008242 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 47/165 (28.48%), Postives = 72/165 (43.64%), Query Frame = 1 

Query: 4   PPPPAELSVDVLSTLDLDF----LNFAGLSALALMIV--YFIFTCYEHKYWNRNGDIEG- 63
           PPPP+    D   +   DF    +   G+ A A ++V  Y + + Y H+  + +      
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 64  ------------GRPPSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNG 123
                       G   ++   A  P    G         + + S  +++Y +     ++ 
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESS 157

Query: 124 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRS 150
           DCS+CL EF E E  R+LPKC H FH  CID WL +  +CPLCR+
Sbjct: 158 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202

[Close]
BLAST of Cla008242 vs. TrEMBL
Match: A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-68
Identity = 126/161 (78.26%), Postives = 140/161 (86.96%), Query Frame = 1 

Query: 2   PPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPS 61
           PPPPPP EL VDVLSTLDLDFLNFAGLSALALM +YF+FTC E KYWNRNGDIEGGR P+
Sbjct: 14  PPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPT 73

Query: 62  SGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLDEFTEGEICR 121
             T+ E P SE  DS  RR +S AVIST+LFQYG  GG++GKN DCSICLDEFTEGEICR
Sbjct: 74  V-TMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICR 133

Query: 122 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 162
           MLPKCKHVFHRFCID+WLPNER+CP+CRSPV+VR++YS PS
Sbjct: 134 MLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]
BLAST of Cla008242 vs. TrEMBL
Match: B9T3N0_RICCO (RING-H2 finger protein ATL5F, putative OS=Ricinus communis GN=RCOM_1165990 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 58/167 (34.73%), Postives = 82/167 (49.10%), Query Frame = 1 

Query: 1   MPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYE------HKYWNRNGDI 60
           +PPPPPP   S+ + S   +  L    + AL LM +  I+ C +      ++  N N   
Sbjct: 12  LPPPPPPPPHSLSLYSNDFMQQLLGVLIGALILMQIAAIYICIKSAARFFYQTQNHNDTE 71

Query: 61  EG---GRPPSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNG----DCS 120
           +G    RPP      +PP  +        RA   VI+ ++F+Y     V K      +C 
Sbjct: 72  QGRPRNRPPQPQPGNQPPRPQPLPPERMARAKVIVIAGRVFEYKSE--VQKPNVFCRECV 131

Query: 121 ICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVR 155
           ICL+EF +GE CR+  KC H +H  CID+WL   RHCP+CR  V  R
Sbjct: 132 ICLEEFKDGEECRIFTKCNHFYHNGCIDKWLIKHRHCPICRESVRPR 176

[Close]
BLAST of Cla008242 vs. TrEMBL
Match: M4CA51_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 55/155 (35.48%), Postives = 77/155 (49.68%), Query Frame = 1 

Query: 3   PPPPPAELSVDVLSTLDLDF--LNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPP 62
           PPPP   L  D  S+   DF  L  A +  LA   +   +     KY  R+    G    
Sbjct: 37  PPPPSFFLDEDSSSSSSSDFSPLLIALIGILASAFILVSYYTLTSKYCRRSSTASGATIS 96

Query: 63  SSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICR 122
           SS  V +  T +  + +S     T + S  +++Y +G    ++ DCS+CL EF E E  R
Sbjct: 97  SSAVVTD--TWQRSNGASNGLDETLIESITVYKYRKGDGFVESSDCSVCLSEFQEEERLR 156

Query: 123 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRI 156
           MLPKC H FH  CID WL +  +CPLCR+ + V +
Sbjct: 157 MLPKCSHAFHVACIDTWLKSHSNCPLCRAEISVTV 189

[Close]
BLAST of Cla008242 vs. TrEMBL
Match: A0A0D3B9J5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.2e-17
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1 

Query: 4   PPPPAELSVDV----LSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRP 63
           PPPP+ L  D      ST D   L  A +  LA   +   +     KY  R+    G   
Sbjct: 37  PPPPSFLLDDEDSSSSSTSDFSPLLIALIGILASAFILVTYYTLTSKYCRRSSTASGATI 96

Query: 64  PSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEIC 123
            SS  V +      G S+      T + S  +++Y +G    ++ DCS+CL EF E E  
Sbjct: 97  SSSAVVTDTWQRSNGASNPIGLDETLIKSITVYKYRKGDGFVESSDCSVCLSEFQEEESL 156

Query: 124 RMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRI 156
           R+LPKC+H FH  CID WL +  +CPLCR+ + V +
Sbjct: 157 RLLPKCRHAFHVACIDTWLKSHSNCPLCRAEISVTV 192

[Close]
BLAST of Cla008242 vs. TrEMBL
Match: A0A078CDH8_BRANA (BnaA03g28280D protein OS=Brassica napus GN=BnaA03g28280D PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.1e-17
Identity = 54/155 (34.84%), Postives = 77/155 (49.68%), Query Frame = 1 

Query: 3   PPPPPAELSVDVLSTLDLDF--LNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPP 62
           PPPP   L  D  S+   DF  L  A +  LA   +   +     KY  R+    G    
Sbjct: 37  PPPPSFFLDEDSSSSSSSDFSPLLIALIGILASAFILVSYYTLTSKYCRRSSTASGATIS 96

Query: 63  SSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICR 122
           SS  V +  T +  + +S     T + S  +++Y +G    ++ DCS+CL EF E E  R
Sbjct: 97  SSAVVTD--TWQRSNGASNGLDETLIESITVYKYRKGDGFVESSDCSVCLSEFQEEERLR 156

Query: 123 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRI 156
           +LPKC H FH  CID WL +  +CPLCR+ + V +
Sbjct: 157 LLPKCSHAFHVPCIDTWLKSHSNCPLCRAEISVTV 189

[Close]
BLAST of Cla008242 vs. NCBI nr
Match: gi|778661462|ref|XP_004151031.2| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 2.2e-68
Identity = 126/161 (78.26%), Postives = 140/161 (86.96%), Query Frame = 1 

Query: 2   PPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPS 61
           PPPPPP EL VDVLSTLDLDFLNFAGLSALALM +YF+FTC E KYWNRNGDIEGGR P+
Sbjct: 14  PPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPT 73

Query: 62  SGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLDEFTEGEICR 121
             T+ E P SE  DS  RR +S AVIST+LFQYG  GG++GKN DCSICLDEFTEGEICR
Sbjct: 74  V-TMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICR 133

Query: 122 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 162
           MLPKCKHVFHRFCID+WLPNER+CP+CRSPV+VR++YS PS
Sbjct: 134 MLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]
BLAST of Cla008242 vs. NCBI nr
Match: gi|659115462|ref|XP_008457570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 5.5e-67
Identity = 123/160 (76.88%), Postives = 138/160 (86.25%), Query Frame = 1 

Query: 3   PPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPPSS 62
           PPPPP +L V  LS LDLDFLN AGLSALA+M +YFIFTCYE K+WNRNGDIEGG+ PS 
Sbjct: 4   PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSV 63

Query: 63  GTVAEPPTSEAGDSSSRRRASTAVISTKLFQYG-EGGLVGKNGDCSICLDEFTEGEICRM 122
            T+ E P SE GDSS RR +S AVIST+LFQYG  GG++GKN DCSICLDEFTEGEICRM
Sbjct: 64  -TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRM 123

Query: 123 LPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRIIYSNPS 162
           LPKCKHVFHRFCIDQWLPNER+CP+CRSPV+VR++YS PS
Sbjct: 124 LPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 162

[Close]
BLAST of Cla008242 vs. NCBI nr
Match: gi|255584222|ref|XP_002532849.1| (PREDICTED: E3 ubiquitin-protein ligase RING1 [Ricinus communis])

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 58/167 (34.73%), Postives = 82/167 (49.10%), Query Frame = 1 

Query: 1   MPPPPPPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYE------HKYWNRNGDI 60
           +PPPPPP   S+ + S   +  L    + AL LM +  I+ C +      ++  N N   
Sbjct: 12  LPPPPPPPPHSLSLYSNDFMQQLLGVLIGALILMQIAAIYICIKSAARFFYQTQNHNDTE 71

Query: 61  EG---GRPPSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNG----DCS 120
           +G    RPP      +PP  +        RA   VI+ ++F+Y     V K      +C 
Sbjct: 72  QGRPRNRPPQPQPGNQPPRPQPLPPERMARAKVIVIAGRVFEYKSE--VQKPNVFCRECV 131

Query: 121 ICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVR 155
           ICL+EF +GE CR+  KC H +H  CID+WL   RHCP+CR  V  R
Sbjct: 132 ICLEEFKDGEECRIFTKCNHFYHNGCIDKWLIKHRHCPICRESVRPR 176

[Close]
BLAST of Cla008242 vs. NCBI nr
Match: gi|685287574|ref|XP_009134730.1| (PREDICTED: RING-H2 finger protein ATL51-like [Brassica rapa])

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 55/155 (35.48%), Postives = 77/155 (49.68%), Query Frame = 1 

Query: 3   PPPPPAELSVDVLSTLDLDF--LNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRPP 62
           PPPP   L  D  S+   DF  L  A +  LA   +   +     KY  R+    G    
Sbjct: 37  PPPPSFFLDEDSSSSSSSDFSPLLIALIGILASAFILVSYYTLTSKYCRRSSTASGATIS 96

Query: 63  SSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEICR 122
           SS  V +  T +  + +S     T + S  +++Y +G    ++ DCS+CL EF E E  R
Sbjct: 97  SSAVVTD--TWQRSNGASNGLDETLIESITVYKYRKGDGFVESSDCSVCLSEFQEEERLR 156

Query: 123 MLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRI 156
           MLPKC H FH  CID WL +  +CPLCR+ + V +
Sbjct: 157 MLPKCSHAFHVACIDTWLKSHSNCPLCRAEISVTV 189

[Close]
BLAST of Cla008242 vs. NCBI nr
Match: gi|922441370|ref|XP_013625571.1| (PREDICTED: RING-H2 finger protein ATL51-like [Brassica oleracea var. oleracea])

HSP 1 Score: 95.5 bits (236), Expect = 9.0e-17
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1 

Query: 4   PPPPAELSVDV----LSTLDLDFLNFAGLSALALMIVYFIFTCYEHKYWNRNGDIEGGRP 63
           PPPP+ L  D      ST D   L  A +  LA   +   +     KY  R+    G   
Sbjct: 37  PPPPSFLLDDEDSSSSSTSDFSPLLIALIGILASAFILVTYYTLTSKYCRRSSTASGATI 96

Query: 64  PSSGTVAEPPTSEAGDSSSRRRASTAVISTKLFQYGEGGLVGKNGDCSICLDEFTEGEIC 123
            SS  V +      G S+      T + S  +++Y +G    ++ DCS+CL EF E E  
Sbjct: 97  SSSAVVTDTWQRSNGASNPIGLDETLIKSITVYKYRKGDGFVESSDCSVCLSEFQEEESL 156

Query: 124 RMLPKCKHVFHRFCIDQWLPNERHCPLCRSPVHVRI 156
           R+LPKC+H FH  CID WL +  +CPLCR+ + V +
Sbjct: 157 RLLPKCRHAFHVACIDTWLKSHSNCPLCRAEISVTV 192

The following BLAST results are available for this feature:
BLAST of Cla008242 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL55_ARATH4.0e-1734.78E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1[more]
ATL52_ARATH8.4e-1533.13RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL53_ARATH7.8e-1332.32Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2[more]
ATL33_ARATH7.8e-1331.25RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2[more]
ATL51_ARATH1.0e-1228.48RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2[more]
BLAST of Cla008242 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0H1_CUCSA1.6e-6878.26Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1[more]
B9T3N0_RICCO1.3e-1734.73RING-H2 finger protein ATL5F, putative OS=Ricinus communis GN=RCOM_1165990 PE=4 ... [more]
M4CA51_BRARP2.1e-1735.48Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0D3B9J5_BRAOL6.2e-1734.62Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078CDH8_BRANA8.1e-1734.84BnaA03g28280D protein OS=Brassica napus GN=BnaA03g28280D PE=4 SV=1[more]
BLAST of Cla008242 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661462|ref|XP_004151031.2|2.2e-6878.26PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|659115462|ref|XP_008457570.1|5.5e-6776.88PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|255584222|ref|XP_002532849.1|1.8e-1734.73PREDICTED: E3 ubiquitin-protein ligase RING1 [Ricinus communis][more]
gi|685287574|ref|XP_009134730.1|3.1e-1735.48PREDICTED: RING-H2 finger protein ATL51-like [Brassica rapa][more]
gi|922441370|ref|XP_013625571.1|9.0e-1734.62PREDICTED: RING-H2 finger protein ATL51-like [Brassica oleracea var. oleracea][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008242Cla008242.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 105..148
score: 1.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 106..147
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 106..148
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 103..151
score: 5.9
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 2..151
score: 2.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 100..154
score: 1.06

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008242Cla97C03G052450Watermelon (97103) v2wmwmbB124
Cla008242Csa1G515990Cucumber (Chinese Long) v2cuwmB021
Cla008242MELO3C020633Melon (DHL92) v3.5.1mewmB146
Cla008242CSPI01G23060Wild cucumber (PI 183967)cpiwmB023
Cla008242Cucsa.117930Cucumber (Gy14) v1cgywmB178
Cla008242CmaCh13G001280Cucurbita maxima (Rimu)cmawmB185
Cla008242CmoCh13G001250Cucurbita moschata (Rifu)cmowmB173
Cla008242CsGy1G022560Cucumber (Gy14) v2cgybwmB023
Cla008242MELO3C020633.2Melon (DHL92) v3.6.1medwmB143
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008242Watermelon (97103) v2wmwmbB115
Cla008242Watermelon (97103) v2wmwmbB118
Cla008242Watermelon (97103) v2wmwmbB134
Cla008242Wax gourdwgowmB368
Cla008242Wax gourdwgowmB471
Cla008242Watermelon (97103) v1wmwmB041
Cla008242Watermelon (97103) v1wmwmB085
Cla008242Watermelon (97103) v1wmwmB086
Cla008242Cucumber (Gy14) v1cgywmB062
Cla008242Cucumber (Gy14) v1cgywmB335
Cla008242Cucurbita maxima (Rimu)cmawmB231
Cla008242Cucurbita maxima (Rimu)cmawmB429
Cla008242Cucurbita maxima (Rimu)cmawmB515
Cla008242Cucurbita maxima (Rimu)cmawmB555
Cla008242Cucurbita moschata (Rifu)cmowmB216
Cla008242Cucurbita moschata (Rifu)cmowmB422
Cla008242Cucurbita moschata (Rifu)cmowmB547
Cla008242Melon (DHL92) v3.5.1mewmB051
Cla008242Melon (DHL92) v3.5.1mewmB094
Cla008242Melon (DHL92) v3.5.1mewmB355
Cla008242Melon (DHL92) v3.5.1mewmB564
Cla008242Watermelon (Charleston Gray)wcgwmB064
Cla008242Watermelon (Charleston Gray)wcgwmB181
Cla008242Watermelon (Charleston Gray)wcgwmB223
Cla008242Watermelon (Charleston Gray)wcgwmB252
Cla008242Cucumber (Chinese Long) v2cuwmB213
Cla008242Cucumber (Chinese Long) v2cuwmB303
Cla008242Cucumber (Chinese Long) v2cuwmB386
Cla008242Cucumber (Chinese Long) v2cuwmB478
Cla008242Cucurbita pepo (Zucchini)cpewmB507
Cla008242Cucurbita pepo (Zucchini)cpewmB281
Cla008242Cucurbita pepo (Zucchini)cpewmB548
Cla008242Cucurbita pepo (Zucchini)cpewmB694
Cla008242Bottle gourd (USVL1VR-Ls)lsiwmB054
Cla008242Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008242Cucumber (Gy14) v2cgybwmB200
Cla008242Cucumber (Gy14) v2cgybwmB281
Cla008242Cucumber (Gy14) v2cgybwmB449
Cla008242Melon (DHL92) v3.6.1medwmB091
Cla008242Melon (DHL92) v3.6.1medwmB052
Cla008242Melon (DHL92) v3.6.1medwmB353
Cla008242Melon (DHL92) v3.6.1medwmB551
Cla008242Silver-seed gourdcarwmB0299
Cla008242Silver-seed gourdcarwmB0323
Cla008242Silver-seed gourdcarwmB0376
Cla008242Silver-seed gourdcarwmB0440
Cla008242Silver-seed gourdcarwmB0997
Cla008242Cucumber (Chinese Long) v3cucwmB026
Cla008242Cucumber (Chinese Long) v3cucwmB315
Cla008242Cucumber (Chinese Long) v3cucwmB409
Cla008242Cucumber (Chinese Long) v3cucwmB504