CmoCh13G001250 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G001250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr13 : 723022 .. 724479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTCATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGGGCGACGGCGGTGATTTCGACGAGGCTGTTTCAATACGGAGAGCGAGGAATGGTAGGGAAAAATGCGGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACACGTTTTTCATCGATTTTGCATCGATCAATGGCTTCCTAATGAACGCCATTGTCCTCTCTGTCGTTCCCCTGTTCATGTTCGTTTCATTTTTGCTCATCGCTCTTGAAACATTCTTTTATTTATTTGCGATTTAGATTTTTCTTTTTGTTCGTAATTGTGTATAATTTTATTTGTTCATTGTTCATCGTTCATCGTTAGCCTTTCTTGAATCGAAACCAACTGTTTGAGTTTTGTTCCATCATGATTTTGAAATATCAAAACTGATTGATTTGTTAGTTCTAGAGAATCATAGTTTGTTTGTGTTGTAGTTGTTTATGGATCCATTTTATTGACCTGTTCTTTTCAAATTTTTAGTGCTGAAAATTAGTTTACTCTCTCAGAATTGCCCATATTATCTCAAATTAAAGATCTAATTGAGACAAGGATTTAAGGAATTGAGGAATTGAGTTAATAAATTAGTCACTCAAATAAAATTCACAACTCAATTCAGTCTTCCTTTTTAAACTAGTCATTCAAATAAAATTCACAACTCAATCCAGTCTTCCTTTTTGTTAGATCATTGAATTAATATTATTATTTTTAATTATTTTTAAAAAATTATAATTATTCACAATGTATTTTAAATAAATCTTAAATTTCAAATATTGAATAATATTTACATAATAATGCATCACTAACACAGTTCTAATCATAATAATGCATCACTAACACAGTTGTAATCTATTTTCGAGTTGGTCTGTTTAAGTCGACCAAAAAAATAACTTGTAATCTGAATCAAATCTTTTTTTTTTTAATTTTTAAAAATTCAATCCAAACTCAAATAGAAAAAAAATCTAATTCAACCCAATCCTTATGATTTTGGTTAGGTTATCAAGTTATTAACTTTATTGTTTAGCCTAATTCAGATATCGAAAGAACTTGTAAGATTAGGGCAAGGAAATTTATACATTTTTAATGTGAAAATATTTTTAGGTAAGTTAAATTTAAAGTTTTTATTTCATTATTTATTTATTTATGTAATTTTTTTGGAATAAAGTTAATTTTTTTAAAATCAGGCTTTAAATTTGAAAGATAAGGAAAACACCGAATTTAAATAAAATTAGGTGAGTATCTATGA

mRNA sequence

ATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTCATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGGGCGACGGCGGTGATTTCGACGAGGCTGTTTCAATACGGAGAGCGAGGAATGGTAGGGAAAAATGCGGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGTATCTATGA

Coding sequence (CDS)

ATGTCTCCGCCACCTTCACCGGAGTTATCCGTCGACGTTCTATCAACTGTGGATCTCGACTTCCTAAATTTCGCCGGACTGTTCATTCTAGCGGTGACGATCATGTACTTCATTTACACCTATTACGAACATAAATACTGGAATCGAAGCCGAGATATCGAAGGCGGAAGGTCGGCGGTAGGATCTTCTGGAGAGGATCGAGGAGGGGCGACGGCGGTGATTTCGACGAGGCTGTTTCAATACGGAGAGCGAGGAATGGTAGGGAAAAATGCGGATTGTTCGATTTGCTTAGATGAATTCGTAGAAGGTGAGTATCTATGA
Homology
[Close]
BLAST of CmoCh13G001250 vs. TrEMBL
Match: A0A0A0M0H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-26
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1 

Query: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62
           PPP  EL VDVLST+DLDFLNFAGL  LA+  +YF++T  E KYWNR+ DIEGGR     
Sbjct: 16  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVT 75

Query: 63  ------SAVGSSGEDRGGATAVISTRLFQYG-ERGMVGKNADCSICLDEFVEGE 105
                 S    S   R  + AVISTRLFQYG   G++GKNADCSICLDEF EGE
Sbjct: 76  MDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGE 129

[Close]
BLAST of CmoCh13G001250 vs. NCBI nr
Match: gi|778661462|ref|XP_004151031.2| (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-26
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1 

Query: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62
           PPP  EL VDVLST+DLDFLNFAGL  LA+  +YF++T  E KYWNR+ DIEGGR     
Sbjct: 16  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVT 75

Query: 63  ------SAVGSSGEDRGGATAVISTRLFQYG-ERGMVGKNADCSICLDEFVEGE 105
                 S    S   R  + AVISTRLFQYG   G++GKNADCSICLDEF EGE
Sbjct: 76  MDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGE 129

[Close]
BLAST of CmoCh13G001250 vs. NCBI nr
Match: gi|659115462|ref|XP_008457570.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 2.2e-24
Identity = 65/114 (57.02%), Postives = 76/114 (66.67%), Query Frame = 1 

Query: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62
           PPP  +L V  LS +DLDFLN AGL  LA+  +YFI+T YE K+WNR+ DIEGG+     
Sbjct: 5   PPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSVT 64

Query: 63  ------SAVGSSGEDRGGATAVISTRLFQYG-ERGMVGKNADCSICLDEFVEGE 105
                 S  G S   R  + AVISTRLFQYG   G++GKNADCSICLDEF EGE
Sbjct: 65  MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGE 118

The following BLAST results are available for this feature:
BLAST of CmoCh13G001250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G001250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M0H1_CUCSA2.2e-2660.53Uncharacterized protein OS=Cucumis sativus GN=Csa_1G515990 PE=4 SV=1[more]
BLAST of CmoCh13G001250 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G001250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661462|ref|XP_004151031.2|3.1e-2660.53PREDICTED: RING-H2 finger protein ATL39-like [Cucumis sativus][more]
gi|659115462|ref|XP_008457570.1|2.2e-2457.02PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001250.1CmoCh13G001250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G001250Cucsa.117930Cucumber (Gy14) v1cgycmoB0286
CmoCh13G001250CmaCh13G001280Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G001250Cla008242Watermelon (97103) v1cmowmB173
CmoCh13G001250Csa1G515990Cucumber (Chinese Long) v2cmocuB204
CmoCh13G001250MELO3C020633Melon (DHL92) v3.5.1cmomeB181
CmoCh13G001250ClCG03G001510Watermelon (Charleston Gray)cmowcgB184
CmoCh13G001250CSPI01G23060Wild cucumber (PI 183967)cmocpiB206
CmoCh13G001250Lsi02G013590Bottle gourd (USVL1VR-Ls)cmolsiB191
CmoCh13G001250Cp4.1LG20g08610Cucurbita pepo (Zucchini)cmocpeB202
CmoCh13G001250MELO3C020633.2Melon (DHL92) v3.6.1cmomedB203
CmoCh13G001250CsaV3_1G034200Cucumber (Chinese Long) v3cmocucB0236
CmoCh13G001250Cla97C03G052450Watermelon (97103) v2cmowmbB209
CmoCh13G001250Bhi08G000525Wax gourdcmowgoB0245
CmoCh13G001250CsGy1G022560Cucumber (Gy14) v2cgybcmoB069
CmoCh13G001250Carg20658Silver-seed gourdcarcmoB0517
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G001250Cucumber (Chinese Long) v2cmocuB214
CmoCh13G001250Melon (DHL92) v3.5.1cmomeB178
CmoCh13G001250Watermelon (Charleston Gray)cmowcgB180
CmoCh13G001250Watermelon (97103) v1cmowmB197
CmoCh13G001250Cucurbita pepo (Zucchini)cmocpeB205
CmoCh13G001250Bottle gourd (USVL1VR-Ls)cmolsiB186
CmoCh13G001250Cucumber (Gy14) v2cgybcmoB454
CmoCh13G001250Melon (DHL92) v3.6.1cmomedB198
CmoCh13G001250Melon (DHL92) v3.6.1cmomedB218
CmoCh13G001250Silver-seed gourdcarcmoB0212
CmoCh13G001250Silver-seed gourdcarcmoB0594
CmoCh13G001250Cucumber (Chinese Long) v3cmocucB0248
CmoCh13G001250Cucumber (Chinese Long) v3cmocucB0253
CmoCh13G001250Watermelon (97103) v2cmowmbB204
CmoCh13G001250Watermelon (97103) v2cmowmbB217
CmoCh13G001250Wax gourdcmowgoB0238
CmoCh13G001250Cucurbita moschata (Rifu)cmocmoB173
CmoCh13G001250Cucurbita moschata (Rifu)cmocmoB180
CmoCh13G001250Cucurbita moschata (Rifu)cmocmoB189
CmoCh13G001250Cucurbita maxima (Rimu)cmacmoB458
CmoCh13G001250Cucurbita maxima (Rimu)cmacmoB543
CmoCh13G001250Cucurbita maxima (Rimu)cmacmoB577
CmoCh13G001250Wild cucumber (PI 183967)cmocpiB217