Csa1G423160 (gene) Cucumber (Chinese Long) v2

NameCsa1G423160
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionOSBP(Oxysterol binding protein)-related protein 4B
LocationChr1 : 15449781 .. 15450337 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGATTTGCATGAATTTTACTTTTCAAAAATTGGGAAACTATGAAGGAGGAAAAGAATAGTAATGAATTATTTGTTCTTCCTTTGGATAATTTTCCATCAAGAAATTCATCTATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACTACTGAAGGTGTTCCATTCCAATGGGAGATGCAACCGGGAACTCCCAAGAATAATCCCCCACTCACGGAGGTGATTCTGCCGCCGATCAGCCCTCCCCCGGCGGTGCTCAGCCTTGGTTTATCGAAGCCGGTGAGGGCTGTTCAGAATAAACAACCATTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGAAGAATCCCTGTCCGTTGGATCTTAATAATAAAAACGAGCGGCTGAGATTTGACTCATGTGGGTCCCAGTGTGAGTTAATGGCTGAATCTTCATGCAAAGGAAAATCTGCACCGGCGGGGGGATCTTCCGGTCACTGGCGGCTGGGATGCGGTCCGTGGAGGATCAACCCCATTAAAATAGGTATGGGAAGGCGAGTTTAG

mRNA sequence

ATGAAGGAGGAAAAGAATAGTAATGAATTATTTGTTCTTCCTTTGGATAATTTTCCATCAAGAAATTCATCTATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACTACTGAAGGTGTTCCATTCCAATGGGAGATGCAACCGGGAACTCCCAAGAATAATCCCCCACTCACGGAGGTGATTCTGCCGCCGATCAGCCCTCCCCCGGCGGTGCTCAGCCTTGGTTTATCGAAGCCGGTGAGGGCTGTTCAGAATAAACAACCATTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGAAGAATCCCTGTCCGTTGGATCTTAATAATAAAAACGAGCGGCTGAGATTTGACTCATGTGGGTCCCAGTGTGAGTTAATGGCTGAATCTTCATGCAAAGGAAAATCTGCACCGGCGGGGGGATCTTCCGGTCACTGGCGGCTGGGATGCGGTCCGTGGAGGATCAACCCCATTAAAATAGGTATGGGAAGGCGAGTTTAG

Coding sequence (CDS)

ATGAAGGAGGAAAAGAATAGTAATGAATTATTTGTTCTTCCTTTGGATAATTTTCCATCAAGAAATTCATCTATGAGTCGTTCCTCTAGATTCTACTATAGAAGAACTACTGAAGGTGTTCCATTCCAATGGGAGATGCAACCGGGAACTCCCAAGAATAATCCCCCACTCACGGAGGTGATTCTGCCGCCGATCAGCCCTCCCCCGGCGGTGCTCAGCCTTGGTTTATCGAAGCCGGTGAGGGCTGTTCAGAATAAACAACCATTGTTTGTGTTATTTGGGCCGTGGAGGAAGCAGCCCAAGCCCAAGCCCAAGAAGAATCCCTGTCCGTTGGATCTTAATAATAAAAACGAGCGGCTGAGATTTGACTCATGTGGGTCCCAGTGTGAGTTAATGGCTGAATCTTCATGCAAAGGAAAATCTGCACCGGCGGGGGGATCTTCCGGTCACTGGCGGCTGGGATGCGGTCCGTGGAGGATCAACCCCATTAAAATAGGTATGGGAAGGCGAGTTTAG

Protein sequence

MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV*
BLAST of Csa1G423160 vs. TrEMBL
Match: A0A0A0LUL8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423160 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 3.5e-98
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1

Query: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV 60
           MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV
Sbjct: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV 60

Query: 61  ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL 120
           ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL
Sbjct: 61  ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL 120

Query: 121 RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV 172
           RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV
Sbjct: 121 RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV 171

BLAST of Csa1G423160 vs. TrEMBL
Match: M5XJH2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019983mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.4e-20
Identity = 75/188 (39.89%), Postives = 94/188 (50.00%), Query Frame = 1

Query: 20  SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
           SRN S+  SSR YY R++EGVPF WEMQPGTP+ NPP  E I PPISPPPA LSLGL KP
Sbjct: 23  SRNPSVGCSSRIYYCRSSEGVPFNWEMQPGTPR-NPPKEEAI-PPISPPPAALSLGLPKP 82

Query: 80  VRAVQ-NKQP---LFVLFGPWRKQPKPKPKKNPCPLDLN------NKNERLRFDSCGSQC 139
               Q NK+P          WRK  K K +KN    ++N      +K +++ F  C S  
Sbjct: 83  YMDQQPNKRPPTSPLPRLKFWRKSKKNKQRKNNVHDNVNYVVGGSDKFDKVEF--CSSDS 142

Query: 140 ELMAESSCKGKSAPAG--------------------------GSSGHWRLGCGPWRINPI 172
           E MA +S +  S  +                            SSGH+   C PW+ +  
Sbjct: 143 EFMASTSPQNSSPSSSSSFSFSKGRLSRQCSSLQSTQARESFSSSGHF--SCSPWKFSSA 202

BLAST of Csa1G423160 vs. TrEMBL
Match: A0A0D2VJS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G246500 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.9e-18
Identity = 63/152 (41.45%), Postives = 84/152 (55.26%), Query Frame = 1

Query: 20  SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
           SR+SS+  SSR YY R++EG+PF WEMQPGTPK   P  E +LPPISPPPA+LSLGL KP
Sbjct: 24  SRDSSVGCSSRIYYYRSSEGIPFNWEMQPGTPKE--PQKEDVLPPISPPPALLSLGLPKP 83

Query: 80  VRAV--QNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERLRFDSC---------GSQ 139
              V  ++K     +F  W+   K   KK    +D +  ++   +++C         GS 
Sbjct: 84  RIDVVEESKVSKLKVFKFWKHGKKNDNKKK---IDDHQSDKYSNYETCSSDDDGEFVGSP 143

Query: 140 CELMAESSC---KGKSAPAGGSSGHWRLGCGP 158
           C   + SS       S P+  SS +   GCGP
Sbjct: 144 CVSSSSSSSFSFGSSSTPSRDSSFNRHYGCGP 170

BLAST of Csa1G423160 vs. TrEMBL
Match: B9T4C1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0355980 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-17
Identity = 74/195 (37.95%), Postives = 90/195 (46.15%), Query Frame = 1

Query: 20  SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
           SRNSSMS SSR +Y R+ EGVPFQWEMQPGT K+ P   E +LPP+SPPPAVLSLGL KP
Sbjct: 28  SRNSSMSCSSRLFYYRSAEGVPFQWEMQPGTAKDPP--QEEVLPPLSPPPAVLSLGLPKP 87

Query: 80  V--RAVQNKQPLFVLFGPWRKQPKPK-PKKNPCP-LDLNNKNERL-------------RF 139
                 + K  +      W+   K +  KK P   L  NN N+ +              F
Sbjct: 88  CIHDLEEPKVSIKSKLKFWKHIRKIQGSKKGPQGFLQRNNNNQNIVNVNNGSDCKKFESF 147

Query: 140 DSCGSQCELM--------------AESSCKGKSAPAGGSSGHWRL------------GCG 172
           + C S  E M              + SS    S   G S    RL            GC 
Sbjct: 148 EFCSSDGEFMVSPRNSSFSSSFSSSSSSSSALSLTKGHSKKSSRLEGPARDSLQGINGCS 207

BLAST of Csa1G423160 vs. TrEMBL
Match: W9QUR8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012856 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 67/191 (35.08%), Postives = 89/191 (46.60%), Query Frame = 1

Query: 20  SRNSSMSRSSR--FYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLS 79
           +RNSS+   S   +YYR   EG+PFQWEMQPGTPK+ P   E  +PP+SPPPA+LSLGL 
Sbjct: 22  TRNSSVGACSSRIYYYRSAGEGIPFQWEMQPGTPKDLP--KEEAIPPLSPPPAILSLGLP 81

Query: 80  KPVRAVQNKQPLF-VLFGPWRKQPKPK----PKKNPCPLDLNNKN----------ERLRF 139
           KP    +  +P        WR   K K     KK       NN++          +  +F
Sbjct: 82  KPCINFEEPKPRSRSKLKFWRNNSKGKITLQVKKISGQATKNNQSIDGITACDYKDHEKF 141

Query: 140 DSCGSQCELMAESSCKGKSAPAGG----SSGHWR------------------LGCGPWRI 172
           D C S CE MA S  +  S+ +      S+GH R                  + C PW I
Sbjct: 142 DFCSSDCEFMASSPMRDSSSSSSSSLSFSNGHSRQSSRLQSPAWHPPNRSSLISCSPWNI 201

BLAST of Csa1G423160 vs. TAIR10
Match: AT4G25845.1 (AT4G25845.1 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1

Query: 20 SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
          SRNSS+     +Y  R  EGVPF+WEMQPGTP N  P    ++PP+SPPPA+LSLGL KP
Sbjct: 13 SRNSSVG----YYDERMPEGVPFEWEMQPGTPINTQP--REVVPPLSPPPAMLSLGLPKP 71

Query: 80 VRAVQ 85
            +++
Sbjct: 73 SISIE 71

BLAST of Csa1G423160 vs. NCBI nr
Match: gi|449457253|ref|XP_004146363.1| (PREDICTED: uncharacterized protein LOC101210202 [Cucumis sativus])

HSP 1 Score: 365.5 bits (937), Expect = 5.0e-98
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1

Query: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV 60
           MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV
Sbjct: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEV 60

Query: 61  ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL 120
           ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL
Sbjct: 61  ILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPKPKPKKNPCPLDLNNKNERL 120

Query: 121 RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV 172
           RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV
Sbjct: 121 RFDSCGSQCELMAESSCKGKSAPAGGSSGHWRLGCGPWRINPIKIGMGRRV 171

BLAST of Csa1G423160 vs. NCBI nr
Match: gi|645234250|ref|XP_008223726.1| (PREDICTED: uncharacterized protein LOC103323510 [Prunus mume])

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-20
Identity = 73/184 (39.67%), Postives = 93/184 (50.54%), Query Frame = 1

Query: 20  SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
           SRN S+  SSR YY R++EGVPF WEMQPGTP+ NPP  E I PPISPPPA +SLGL KP
Sbjct: 31  SRNPSVGCSSRIYYCRSSEGVPFNWEMQPGTPR-NPPKEEAI-PPISPPPAAVSLGLPKP 90

Query: 80  VRAVQ-NKQP---LFVLFGPWRKQPKPKPKKNPCPLDLN------NKNERLRFDSCGSQC 139
               Q NK+P          WRK  K K +KN    ++N      +K +++ F  C S  
Sbjct: 91  YMDQQPNKRPPTSPLPRLKFWRKSKKNKQRKNNVNDNVNYVVGGSDKFDKVEF--CSSDT 150

Query: 140 ELMAESSCKGKSAPAGGSSGHWRL----------------------GCGPWRINPIKIGM 172
           E MA +S    S+ +  S    RL                       C PW+ + + I +
Sbjct: 151 EFMASTSPLNSSSSSSSSFSKGRLSRQCSSLQSTQARESFSSSGHFSCSPWKFSSVLISI 210

BLAST of Csa1G423160 vs. NCBI nr
Match: gi|596266083|ref|XP_007225028.1| (hypothetical protein PRUPE_ppa019983mg [Prunus persica])

HSP 1 Score: 105.5 bits (262), Expect = 9.2e-20
Identity = 75/188 (39.89%), Postives = 94/188 (50.00%), Query Frame = 1

Query: 20  SRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKP 79
           SRN S+  SSR YY R++EGVPF WEMQPGTP+ NPP  E I PPISPPPA LSLGL KP
Sbjct: 23  SRNPSVGCSSRIYYCRSSEGVPFNWEMQPGTPR-NPPKEEAI-PPISPPPAALSLGLPKP 82

Query: 80  VRAVQ-NKQP---LFVLFGPWRKQPKPKPKKNPCPLDLN------NKNERLRFDSCGSQC 139
               Q NK+P          WRK  K K +KN    ++N      +K +++ F  C S  
Sbjct: 83  YMDQQPNKRPPTSPLPRLKFWRKSKKNKQRKNNVHDNVNYVVGGSDKFDKVEF--CSSDS 142

Query: 140 ELMAESSCKGKSAPAG--------------------------GSSGHWRLGCGPWRINPI 172
           E MA +S +  S  +                            SSGH+   C PW+ +  
Sbjct: 143 EFMASTSPQNSSPSSSSSFSFSKGRLSRQCSSLQSTQARESFSSSGHF--SCSPWKFSSA 202

BLAST of Csa1G423160 vs. NCBI nr
Match: gi|1009105392|ref|XP_015887184.1| (PREDICTED: uncharacterized protein LOC107421988 [Ziziphus jujuba])

HSP 1 Score: 103.2 bits (256), Expect = 4.6e-19
Identity = 72/186 (38.71%), Postives = 96/186 (51.61%), Query Frame = 1

Query: 15  LDNFPSRNSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSL 74
           L+   SRNS++  SSR YY R++EG+PF+WEMQPGTPK+ P   E  LPP+SPPPAV+SL
Sbjct: 23  LNRIISRNSTVGCSSRVYYYRSSEGIPFEWEMQPGTPKDPP--KEEALPPLSPPPAVISL 82

Query: 75  GLSKP-VRAVQNKQP--LFVLFGPWRKQPKPKPK-----KNPCPLDLNNKNERL-RFDSC 134
           GL KP +  ++ K P     L   W+K  K K K     +N    DL + N+   + + C
Sbjct: 83  GLPKPCILNLEPKTPSRSIWLIRFWKKCKKNKHKISSKFENNVGGDLQSDNKYYEKEEFC 142

Query: 135 GSQCELMA---ESSCKGKSAPAGGSSG-----------------HWRLGCGPWRINPIKI 172
           GS  E MA    SS    S+P   S+G                    L C PW  + I +
Sbjct: 143 GSDHEFMASQRHSSTSSSSSPMSFSNGFDMESSSRMRSPARDSFRRPLSCSPWNFSAIMV 202

BLAST of Csa1G423160 vs. NCBI nr
Match: gi|694438800|ref|XP_009346343.1| (PREDICTED: uncharacterized protein LOC103938068 [Pyrus x bretschneideri])

HSP 1 Score: 99.0 bits (245), Expect = 8.7e-18
Identity = 68/152 (44.74%), Postives = 84/152 (55.26%), Query Frame = 1

Query: 22  NSSMSRSSRFYYRRTTEGVPFQWEMQPGTPKNNPPLTEVILPPISPPPAVLSLGLSKPVR 81
           +SS+  SSR YY R+TEGVPF WE+QPGTP+ NPP  E I PPISPPPAVLSLGL KP  
Sbjct: 34  SSSLGCSSRVYYCRSTEGVPFNWELQPGTPR-NPPKEEAI-PPISPPPAVLSLGLPKPCI 93

Query: 82  AVQ---NKQPLFVL--FGPWRKQPKPKPKKNPCPLDLNNKNERLRFD---SCGSQCELMA 141
             Q   NK P   L     W K+ K K ++     +L +     +FD   SC S  E MA
Sbjct: 94  DQQLHTNKPPTSPLHRLKFWSKKSKGKQQRKN---NLQHNGGLYKFDKVESCSSDSEFMA 153

Query: 142 ESSCKGKSAPAGGSSGHWRLG-CGPWRINPIK 165
            S+    S+ +  SS  +  G C   R  P +
Sbjct: 154 SSTSPRNSSSSSSSSFSFSKGQCSSLRSTPAR 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LUL8_CUCSA3.5e-98100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423160 PE=4 SV=1[more]
M5XJH2_PRUPE6.4e-2039.89Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019983mg PE=4 SV=1[more]
A0A0D2VJS5_GOSRA7.9e-1841.45Uncharacterized protein OS=Gossypium raimondii GN=B456_013G246500 PE=4 SV=1[more]
B9T4C1_RICCO3.9e-1737.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0355980 PE=4 SV=1[more]
W9QUR8_9ROSA6.7e-1735.08Uncharacterized protein OS=Morus notabilis GN=L484_012856 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G25845.11.8e-1355.38 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding p... [more]
Match NameE-valueIdentityDescription
gi|449457253|ref|XP_004146363.1|5.0e-98100.00PREDICTED: uncharacterized protein LOC101210202 [Cucumis sativus][more]
gi|645234250|ref|XP_008223726.1|5.4e-2039.67PREDICTED: uncharacterized protein LOC103323510 [Prunus mume][more]
gi|596266083|ref|XP_007225028.1|9.2e-2039.89hypothetical protein PRUPE_ppa019983mg [Prunus persica][more]
gi|1009105392|ref|XP_015887184.1|4.6e-1938.71PREDICTED: uncharacterized protein LOC107421988 [Ziziphus jujuba][more]
gi|694438800|ref|XP_009346343.1|8.7e-1844.74PREDICTED: uncharacterized protein LOC103938068 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G423160.1Csa1G423160.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33257FAMILY NOT NAMEDcoord: 20..108
score: 5.0
NoneNo IPR availablePANTHERPTHR33257:SF6SUBFAMILY NOT NAMEDcoord: 20..108
score: 5.0

The following gene(s) are paralogous to this gene:

None