Carg24221 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24221
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	OSBP(Oxysterol binding protein)-related protein 4B, putative
Location	Cucurbita_argyrosperma_scaffold_225 : 390021 .. 390575 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

mRNA sequence

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

Coding sequence (CDS)

ATGGATACAACTTTTCATTGGGATGTGAAGAACAAAGTGATATCAAGAACATCTTCAATTGGTTGCTCTTCTCGCAGCATTTACTATTGTGGAACACCTGAAGGTGTCCCTTTCAAATGGGAAACACAGCCAGGAACTCCCAAAGATCCACCCCCTCAAGACATGCTTCCGCCCCTCACCCCTCCCCCGGCGGTTCTCAGTCTCGGGTTACCGAAACCGTGCATCGAACAACCGAAAACCCGACCTCGACCCCTGATAAGGCTTCGGTTTTGGAGGAGAAGCAAGAAGAATGGTAAGAGAGATGCCCGAGCTAGAACTATTGACTATAGTAATGAAGATCGTTTTGGTAACCCTGATAAGTTGGAGACGTTTTCGTTTCTTAGCTCTGATTGTGAGTTCATGACATCGTCTCGGAATTCTATGTTGTCGTCGCCGTCGTTGTCTTTGTCTTCTTCTTCATCACCATCGTCATTCTTCGAGTCGTTAACTGTACGTCGACGTCTGAGTTGTAATGCTTGGCAAATTAACCGGATTCTAGCTTGTTACCATTGCTAG

Protein sequence

MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFSFLSSDCEFMTSSRNSMLSSPSLSLSSSSSPSSFFESLTVRRRLSCNAWQINRILACYHC

Homology

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022938321.1 (putative protein TPRXL [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 2.4e-94
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT
Sbjct: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK
Sbjct: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVRRRLSCNAWQINRILA 180
           LETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVRRRLSCNAWQINRILA
Sbjct: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVRRRLSCNAWQINRILA 180

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022929606.1 (uncharacterized protein LOC111436141 [Cucurbita moschata])

HSP 1 Score: 224.9 bits (572), Expect = 2.2e-55
Identity = 130/194 (67.01%), Postives = 145/194 (74.74%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPFKWETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAV+SLGLP PCIE+PKTRPRP ++L FWRR KK  +G R A+A TIDYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLWFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVR--------RRLSC 180
           DKLETFSFLSSDCEFM S R+SM        XXXX      ESLTVR        R  SC
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSM-----XXXXXXXXXXXLIESLTVRNMGRVSLGRPSSC 180

Query: 181 N-AWQINRILACYH 184
           + A +I+RILACYH
Sbjct: 181 STAGKIHRILACYH 182

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022997465.1 (uncharacterized protein LOC111492375 [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 130/194 (67.01%), Postives = 143/194 (73.71%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPFKWETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFKWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAVLSLGLP PCIE+PKTRPRP ++LRFWRR KK  +  R A+A TIDYSN       
Sbjct: 61  PPPAVLSLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDDGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVR--------RRLSC 180
            KLETFSFLSSDCEFM S R+SM        XXXX      ESLTVR        R  SC
Sbjct: 121 GKLETFSFLSSDCEFMASPRDSM--XXXXXXXXXXXXXXXIESLTVRHMGRVSLGRPSSC 180

Query: 181 -NAWQINRILACYH 184
             A +I+RILACYH
Sbjct: 181 GTAGKIHRILACYH 185

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_023546389.1 (uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 125/189 (66.14%), Postives = 145/189 (76.72%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD+K+KVI+RTSSIGCSSRS YYCG  EGVPF WETQPGTPKDPPPQD+LPPL+
Sbjct: 1   MDGNFHWDMKSKVIARTSSIGCSSRSTYYCGAAEGVPFVWETQPGTPKDPPPQDLLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKK--NGKRDARARTIDYSNEDRFGNP 120
           PPPAV+SLGLP PCIE+PKTRPRP ++LRFWRR KK  +G R A+A TIDYSN       
Sbjct: 61  PPPAVISLGLPLPCIEKPKTRPRPTMKLRFWRRVKKSRDGGRAAQATTIDYSN------- 120

Query: 121 DKLETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESL---TVRRRLSCN-AWQ 180
           DKLETFSFLSSDCEFM S R+SM        XXXX  S   +++   ++ R  SC+ A +
Sbjct: 121 DKLETFSFLSSDCEFMASPRDSMSXXXXXXXXXXXXESLTVQNMGRASLGRPSSCSTAGK 180

Query: 181 INRILACYH 184
           I+RILACYH
Sbjct: 181 IHRILACYH 182

[Close]

BLAST of Carg24221 vs. NCBI nr
Match: XP_022153305.1 (uncharacterized protein LOC111020830 [Momordica charantia])

HSP 1 Score: 217.2 bits (552), Expect = 4.5e-53
Identity = 125/187 (66.84%), Postives = 139/187 (74.33%), Query Frame = 0


Query: 1   MDTTFHWDVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLT 60
           MD  FHWD K+KVISRTSS+GCSSRSIYYCGT EGVPFKWETQPGTPKDPPPQ+MLPPL+
Sbjct: 1   MDGKFHWDTKSKVISRTSSVGCSSRSIYYCGTAEGVPFKWETQPGTPKDPPPQEMLPPLS 60

Query: 61  PPPAVLSLGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDK 120
           PPPAVLSLGLPKPCIE+P  RPR  + LRFWR+S+K  KR+         N D FG+PDK
Sbjct: 61  PPPAVLSLGLPKPCIERPNPRPRLRMSLRFWRKSEK--KRE---------NGDGFGHPDK 120

Query: 121 LETFSFLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVRR--RLSC-NAWQINR 180
           LET SF+SSD EFM S R+S+  S     XXXX      ESL VR   R+S    WQINR
Sbjct: 121 LETSSFMSSDGEFMASPRDSV--SSLXXXXXXXXXXXLLESLNVRNMGRVSFGRPWQINR 174

Query: 181 ILACYHC 185
            LACYHC
Sbjct: 181 FLACYHC 174

[Close]

BLAST of Carg24221 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-14
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 14 ISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLPKP 73
          ISR SS+G      Y    PEGVPF+WE QPGTP +  P++++PPL+PPPA+LSLGLPKP
Sbjct: 12 ISRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKP 71

Query: 74 --CIEQPKTRPRPL-IRLRFWR 93
             IE+PK    P  ++LR W+
Sbjct: 72 SISIEEPKNFVFPTKLKLRNWK 88

[Close]

BLAST of Carg24221 vs. TAIR10
Match: AT5G01790.1 (unknown protein)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-05
Identity = 34/89 (38.20%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 15  SRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQ-DMLPPLTPPPAVLSLGLPKP 74
           S  S+   S R  YY G    VPF+WE+ PGTPK P  +   LPPLTPPP+  S    + 
Sbjct: 54  SSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFSFSGDQI 113

Query: 75  CIEQPKTRPRPLIRL---RFWRRSKKNGK 100
                K+  + L  +    FW     NGK
Sbjct: 114 RRRSKKSTKKILALIPTRLFWLSGDHNGK 142

[Close]

BLAST of Carg24221 vs. TrEMBL
Match: tr|A0A0A0LHA2|A0A0A0LHA2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059740 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-35
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 6   HWDVKNKVISRTSSIGCSSRSIYYCGT-PEGVPFKWETQPGTPKDPPPQDMLPPLTPPPA 65
           HWD+KNKVISRTSSIG SS SIYY GT  +GVPFKWETQPGTPKDPPPQD+LPPL+PPPA
Sbjct: 7   HWDMKNKVISRTSSIGYSSHSIYYSGTADQGVPFKWETQPGTPKDPPPQDLLPPLSPPPA 66

Query: 66  VLSLGLPKPCIEQPKTRPRPLIRLRFWR---RSKKNGKRDARARTIDYSNE 113
           VLSLG+PKP I+QPK+RP P +RLRFW+   +S+  GK  A+  TID+ N+
Sbjct: 67  VLSLGVPKPYIDQPKSRPLPRMRLRFWKKIMKSRDGGKAAAQTTTIDHYND 117

[Close]

BLAST of Carg24221 vs. TrEMBL
Match: tr|A0A2I4FHG1|A0A2I4FHG1_9ROSI (uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.7e-29
Identity = 85/182 (46.70%), Postives = 106/182 (58.24%), Query Frame = 0


Query: 8   DVKNKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLS 67
           +  +K++S  SS+G SSR IYY  + EGVPFKWE QPGTPKDPP  + +PPL+PPPAVLS
Sbjct: 21  EFNHKILSGNSSVGYSSR-IYYHRSNEGVPFKWEMQPGTPKDPPNDEGIPPLSPPPAVLS 80

Query: 68  LGLPKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFSFL 127
           LGLPKPCI+    + +   R+RFW +SKKN +R    +     + D     DK E F F 
Sbjct: 81  LGLPKPCIKVQPNKAKTWPRIRFWNKSKKNKQRSEDVKAGPRRSHDHTTGSDKFERFEFC 140

Query: 128 SSDCEFMTSSRNSMLS---------SPSLSLXXXXSPSSFFESLTVRRRLSCNAWQINRI 181
           SSD EFMTS R S  S          PSL      SP       + R  LSC+ W I+ I
Sbjct: 141 SSDREFMTSPRISSSSXXXXLSFSNGPSLQSSRLQSPGRD----SFRVPLSCSPWNISTI 197

[Close]

BLAST of Carg24221 vs. TrEMBL
Match: tr|A0A2P5DRN1|A0A2P5DRN1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038800 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.8e-29
Identity = 98/188 (52.13%), Postives = 122/188 (64.89%), Query Frame = 0


Query: 5   FHWDVKN-KVISRTSSIGCSSRSIYY--CGTPEGVPFKWETQPGTPKDPPPQDMLPPLTP 64
           F ++VKN  ++SR SS+G SSR  YY   GT  G+PF+WE QPGTPKDPP ++ LPPL+P
Sbjct: 12  FSFNVKNDNILSRNSSVGYSSRIYYYRTAGT-GGIPFQWEMQPGTPKDPPKEEALPPLSP 71

Query: 65  PPAVLSLGLPKPC-IEQPKTRPRPLIRLRFWRRSKKNGKR-DARARTIDYSNEDRFGNPD 124
           PPAV SLGLPKPC I+Q   +PR  + +RFW+RSK+N  +  A  R  D S++ + G  D
Sbjct: 72  PPAVTSLGLPKPCVIDQEPCKPRRRL-IRFWKRSKRNDHQLRAYNRKSDQSDDVQNGVSD 131

Query: 125 -KLETFSFLSSDCEFMTS-SRN-SMLSSPSLSL-XXXXSPSSFFESLT----VRRRLSCN 180
            K E F F SSDCEFM S +RN S  SSPSLS      S SS F+S       R  LSC+
Sbjct: 132 YKDEKFEFCSSDCEFMASPARNSSSSSSPSLSFSNGFSSQSSRFQSPAWHPRSRSTLSCS 191

[Close]

BLAST of Carg24221 vs. TrEMBL
Match: tr|A0A2P6QTB2|A0A2P6QTB2_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0402361 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.3e-26
Identity = 82/184 (44.57%), Postives = 103/184 (55.98%), Query Frame = 0


Query: 11  NKVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGL 70
           N+ +SR SS+GCSSR IYYC T EGVPF WE QPGTP++PP ++ + PLTPPPAV+SLGL
Sbjct: 7   NRSLSRNSSVGCSSR-IYYCRTNEGVPFNWEMQPGTPRNPPKEEAIAPLTPPPAVISLGL 66

Query: 71  PKPCIEQPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFSFLSSD 130
           PKPCI+   ++P    RL FWR+SKKN K      T+  +N  R    DK + F F SSD
Sbjct: 67  PKPCIDVRHSKPPTRPRLGFWRKSKKN-KESKNVTTV--NNVAR--GSDKFDMFDFCSSD 126

Query: 131 CEFMTSS---------------RNSMLSSPSLSLXXXXSPSSFFESLTVRRRLSCNAWQI 180
            EFM S+                   LS    SL    +  SF  S       SC+ W  
Sbjct: 127 SEFMASTXXXXXXXXXXXXXXXSKGRLSRECSSLRSTPARDSF--SSNAAAHFSCSPWNF 182

[Close]

BLAST of Carg24221 vs. TrEMBL
Match: tr|A0A2N9IW61|A0A2N9IW61_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56261 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.1e-26
Identity = 85/180 (47.22%), Postives = 98/180 (54.44%), Query Frame = 0


Query: 12  KVISRTSSIGCSSRSIYYCGTPEGVPFKWETQPGTPKDPPPQDMLPPLTPPPAVLSLGLP 71
           K++SR SS+GCSSR IYY    EGVPF WE QPG  K+PP  +++PP++PPPAVLSLGLP
Sbjct: 24  KILSRNSSVGCSSR-IYYYRNAEGVPFNWEMQPGKSKEPPKDEVIPPISPPPAVLSLGLP 83

Query: 72  KPCIE------QPKTRPRPLIRLRFWRRSKKNGKRDARARTIDYSNEDRFGNPDKLETFS 131
           KPCIE        KT P    RLRFW +SKKN K           +       DK E F 
Sbjct: 84  KPCIEVHPSKQAQKTWP---TRLRFWYKSKKN-KMSKNINIAKACSRGSHDGSDKTERFE 143

Query: 132 FLSSDCEFMTSSRNSMLSSPSLSLXXXXSPSSFFESLTVRRR------LSCNAWQINRIL 180
           F SSDCEFM SS     SS   SL     P      L    R      LSC+ W I+ IL
Sbjct: 144 FCSSDCEFMASSPQVSSSSSWSSLSFSNGPLVQSSRLGSPGRDSFHGPLSCSPWNISTIL 198

The following BLAST results are available for this feature:

BLAST of Carg24221 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938321.1	2.4e-94	100.00	putative protein TPRXL [Cucurbita moschata]	[more]
XP_022929606.1	2.2e-55	67.01	uncharacterized protein LOC111436141 [Cucurbita moschata]	[more]
XP_022997465.1	1.4e-54	67.01	uncharacterized protein LOC111492375 [Cucurbita maxima]	[more]
XP_023546389.1	1.4e-54	66.14	uncharacterized protein LOC111805512 [Cucurbita pepo subsp. pepo]	[more]
XP_022153305.1	4.5e-53	66.84	uncharacterized protein LOC111020830 [Momordica charantia]	[more]

BLAST of Carg24221 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25845.1	8.6e-14	53.66	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]
AT5G01790.1	4.3e-05	38.20	unknown protein	[more]

BLAST of Carg24221 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24221 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHA2\|A0A0A0LHA2_CUCSA	2.8e-35	71.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059740 PE=4 SV=1	[more]
tr\|A0A2I4FHG1\|A0A2I4FHG1_9ROSI	6.7e-29	46.70	uncharacterized protein LOC108998834 OS=Juglans regia OX=51240 GN=LOC108998834 P...	[more]
tr\|A0A2P5DRN1\|A0A2P5DRN1_PARAD	8.8e-29	52.13	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_038800 PE...	[more]
tr\|A0A2P6QTB2\|A0A2P6QTB2_ROSCH	5.3e-26	44.57	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0402361 PE=4...	[more]
tr\|A0A2N9IW61\|A0A2N9IW61_FAGSY	9.1e-26	47.22	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56261 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24221-RA	Carg24221-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33257:SF6	SUBFAMILY NOT NAMED	coord: 11..162
None	No IPR available	PANTHER	PTHR33257	FAMILY NOT NAMED	coord: 11..162

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24221	Cla022818	Watermelon (97103) v1	carwmB0994
Carg24221	Cla018831	Watermelon (97103) v1	carwmB0995
Carg24221	Csa2G059740	Cucumber (Chinese Long) v2	carcuB1009
Carg24221	Csa1G423160	Cucumber (Chinese Long) v2	carcuB1008
Carg24221	MELO3C017460	Melon (DHL92) v3.5.1	carmeB0969
Carg24221	MELO3C004021	Melon (DHL92) v3.5.1	carmeB0970
Carg24221	ClCG06G013370	Watermelon (Charleston Gray)	carwcgB0970
Carg24221	ClCG11G012130	Watermelon (Charleston Gray)	carwcgB0969
Carg24221	CSPI02G06050	Wild cucumber (PI 183967)	carcpiB1033
Carg24221	CSPI01G20300	Wild cucumber (PI 183967)	carcpiB1032
Carg24221	Cucsa.089310	Cucumber (Gy14) v1	carcgyB1112
Carg24221	CmaCh05G006880	Cucurbita maxima (Rimu)	carcmaB1379
Carg24221	CmoCh05G007230	Cucurbita moschata (Rifu)	carcmoB1334
Carg24221	CmoCh12G008920	Cucurbita moschata (Rifu)	carcmoB1333
Carg24221	Lsi11G007600	Bottle gourd (USVL1VR-Ls)	carlsiB908
Carg24221	Lsi06G011770	Bottle gourd (USVL1VR-Ls)	carlsiB909
Carg24221	Cp4.1LG11g06410	Cucurbita pepo (Zucchini)	carcpeB1381
Carg24221	Cp4.1LG07g07350	Cucurbita pepo (Zucchini)	carcpeB1382
Carg24221	CsGy2G006170	Cucumber (Gy14) v2	carcgybB0982
Carg24221	MELO3C017460.2	Melon (DHL92) v3.6.1	carmedB0979
Carg24221	MELO3C004021.2	Melon (DHL92) v3.6.1	carmedB0980
Carg24221	CsaV3_2G008430	Cucumber (Chinese Long) v3	carcucB1039
Carg24221	CsaV3_1G031620	Cucumber (Chinese Long) v3	carcucB1038
Carg24221	Cla97C11G218030	Watermelon (97103) v2	carwmbB1048
Carg24221	Bhi06G001116	Wax gourd	carwgoB1164

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24221	Carg08376	Silver-seed gourd	carcarB073

The following block(s) are covering this gene:

None