Carg15240 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGGTACTGGAAGGCGAGTTTAATTTCGTGTATTATCGATATCTTTTTTTTGGTAGATTTTGTAAATAAATAA ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
BLAST of Carg15240 vs. NCBI nr
Match: XP_004146363.1 (PREDICTED: uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_1G423160 [Cucumis sativus]) HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36 Identity = 95/167 (56.89%), Postives = 103/167 (61.68%), Query Frame = 0
BLAST of Carg15240 vs. NCBI nr
Match: XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 156.4 bits (394), Expect = 7.8e-35 Identity = 90/166 (54.22%), Postives = 106/166 (63.86%), Query Frame = 0
BLAST of Carg15240 vs. NCBI nr
Match: XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima]) HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34 Identity = 88/165 (53.33%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Carg15240 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata]) HSP 1 Score: 153.3 bits (386), Expect = 6.6e-34 Identity = 89/165 (53.94%), Postives = 105/165 (63.64%), Query Frame = 0
BLAST of Carg15240 vs. NCBI nr
Match: XP_012461917.1 (PREDICTED: uncharacterized protein LOC105781948 [Gossypium raimondii] >KJB83414.1 hypothetical protein B456_013G246500 [Gossypium raimondii]) HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11 Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0
BLAST of Carg15240 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)) HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08 Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0
BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A0A0LUL8|A0A0A0LUL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36 Identity = 95/167 (56.89%), Postives = 103/167 (61.68%), Query Frame = 0
BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A0D2VJS5|A0A0D2VJS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246500 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11 Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0
BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5RP41|A0A2P5RP41_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD14491 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11 Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = 0
BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5XWS8|A0A2P5XWS8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12877 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11 Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = 0
BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5E200|A0A2P5E200_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235740 PE=4 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10 Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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