Carg15240 (gene) Silver-seed gourd

NameCarg15240
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionOSBP(Oxysterol binding protein)-related protein 4B, putative
LocationCucurbita_argyrosperma_scaffold_073 : 524891 .. 525402 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGGTACTGGAAGGCGAGTTTAATTTCGTGTATTATCGATATCTTTTTTTTGGTAGATTTTGTAAATAAATAA

mRNA sequence

ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA

Coding sequence (CDS)

ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACTTCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTGGTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGTCCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGGAGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA

Protein sequence

MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
BLAST of Carg15240 vs. NCBI nr
Match: XP_004146363.1 (PREDICTED: uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hypothetical protein Csa_1G423160 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 3.2e-36
Identity = 95/167 (56.89%), Postives = 103/167 (61.68%), Query Frame = 0

Query: 1   MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVE 60
           MKEE N    FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E
Sbjct: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTE 60

Query: 61  PVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ------SKSNNNSRPLDDHR 120
            +   I PPP V+SL L KP   VQNKQP F+LF PWRKQ                   R
Sbjct: 61  VILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPXXXXXXXXXXXXXXXXXXR 120

Query: 121 SKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI 148
            +F            S CK KS  PA  S GHWR GC PWRINPIKI
Sbjct: 121 LRFDSCGSQCELMAESSCKGKS-APAGGSSGHWRLGCGPWRINPIKI 165

BLAST of Carg15240 vs. NCBI nr
Match: XP_023530969.1 (uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.4 bits (394), Expect = 7.8e-35
Identity = 90/166 (54.22%), Postives = 106/166 (63.86%), Query Frame = 0

Query: 3   EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
           E+ +  FVLPLD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+  P  E V +
Sbjct: 4   EKDDAEFVLPLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-QPYTEAVTL 63

Query: 63  RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNN---SRPLDDHRSKFG---- 122
            I PPP  +SL   KPA  Q KQ  FLLFRPWRKQSKS  +   S   +D RS+FG    
Sbjct: 64  LITPPPAALSLRPPKPARTQGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRSRFGSCGS 123

Query: 123 ------SPCKAKSPT--------PAAESPGHWRFGCRPWRINPIKI 148
                 SPC+ KS +        PAAES  H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCQPKSSSSSSSWSSLPAAESSAHRRLGCGPWRINPLRI 168

BLAST of Carg15240 vs. NCBI nr
Match: XP_023007086.1 (uncharacterized protein LOC111499680 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 5.1e-34
Identity = 88/165 (53.33%), Postives = 105/165 (63.64%), Query Frame = 0

Query: 3   EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
           E+ +  FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V +
Sbjct: 4   EKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTL 63

Query: 63  RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNN---SRPLDDHRSKFG---- 122
            I PPP  +SL   KPA    KQ  FLLFRPWRKQSKS  +   S   +D R++FG    
Sbjct: 64  LITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSKKHSCLSDEFEDGRTRFGSCGS 123

Query: 123 ------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI 148
                 SPC+ KS +       PAAES  H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCEPKSSSSSAWSSLPAAESSAHRRLGCGPWRINPLRI 167

BLAST of Carg15240 vs. NCBI nr
Match: XP_022930189.1 (uncharacterized protein LOC111436686 [Cucurbita moschata])

HSP 1 Score: 153.3 bits (386), Expect = 6.6e-34
Identity = 89/165 (53.94%), Postives = 105/165 (63.64%), Query Frame = 0

Query: 3   EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPV 62
           E+ +  FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V +
Sbjct: 4   EKDDAEFVLSLDNLPSRCSSLGCSSRLYYYRRTTEGVPFQWEMQPGTPKD-PPYTEAVTL 63

Query: 63  RIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLD---DHRSKFG---- 122
            I PPP  +SL   KPA    KQ  FLLFRPWRKQSKS  +S   D   D R++FG    
Sbjct: 64  LITPPPAALSLRPPKPARTHGKQSLFLLFRPWRKQSKSQKHSCLSDEFGDGRTRFGSCGS 123

Query: 123 ------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI 148
                 SPC+ KS +       PAAES  H R GC PWRINP++I
Sbjct: 124 QCEFIQSPCEPKSSSSSSWSSLPAAESSAHRRLGCGPWRINPLRI 167

BLAST of Carg15240 vs. NCBI nr
Match: XP_012461917.1 (PREDICTED: uncharacterized protein LOC105781948 [Gossypium raimondii] >KJB83414.1 hypothetical protein B456_013G246500 [Gossypium raimondii])

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0

Query: 18  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
           +R+SS+G SSR YYY R+SEG+PF WEM PGTPK   P  E V   I PPP ++SL L K
Sbjct: 24  SRDSSVGCSSRIYYY-RSSEGIPFNWEMQPGTPKE--PQKEDVLPPISPPPALLSLGLPK 83

Query: 78  P---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK----------------FGSPC 137
           P      ++K  +  +F+ W K  K N+N + +DDH+S                  GSPC
Sbjct: 84  PRIDVVEESKVSKLKVFKFW-KHGKKNDNKKKIDDHQSDKYSNYETCSSDDDGEFVGSPC 143

Query: 138 KAK----------SPTPAAESPGHWRFGCRP 140
            +             TP+ +S  +  +GC P
Sbjct: 144 VSSXXXXXXXXXXXXTPSRDSSFNRHYGCGP 170

BLAST of Carg15240 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 56.2 bits (134), Expect = 2.0e-08
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 18 TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
          +RNSS+G     YY  R  EGVPF+WEM PGTP NT P  E VP  + PPP ++SL L K
Sbjct: 13 SRNSSVG-----YYDERMPEGVPFEWEMQPGTPINTQPR-EVVP-PLSPPPAMLSLGLPK 72

Query: 78 PATVQNKQPQFLLF 92
          P ++  ++P+  +F
Sbjct: 73 P-SISIEEPKNFVF 78

BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A0A0LUL8|A0A0A0LUL8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 95/167 (56.89%), Postives = 103/167 (61.68%), Query Frame = 0

Query: 1   MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVE 60
           MKEE N    FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E
Sbjct: 1   MKEEKNSNELFVLPLDNFPSRNSSMSRSSR-FYYRRTTEGVPFQWEMQPGTPKNNPPLTE 60

Query: 61  PVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ------SKSNNNSRPLDDHR 120
            +   I PPP V+SL L KP   VQNKQP F+LF PWRKQ                   R
Sbjct: 61  VILPPISPPPAVLSLGLSKPVRAVQNKQPLFVLFGPWRKQPXXXXXXXXXXXXXXXXXXR 120

Query: 121 SKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI 148
            +F            S CK KS  PA  S GHWR GC PWRINPIKI
Sbjct: 121 LRFDSCGSQCELMAESSCKGKS-APAGGSSGHWRLGCGPWRINPIKI 165

BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A0D2VJS5|A0A0D2VJS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246500 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 0

Query: 18  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
           +R+SS+G SSR YYY R+SEG+PF WEM PGTPK   P  E V   I PPP ++SL L K
Sbjct: 24  SRDSSVGCSSRIYYY-RSSEGIPFNWEMQPGTPKE--PQKEDVLPPISPPPALLSLGLPK 83

Query: 78  P---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK----------------FGSPC 137
           P      ++K  +  +F+ W K  K N+N + +DDH+S                  GSPC
Sbjct: 84  PRIDVVEESKVSKLKVFKFW-KHGKKNDNKKKIDDHQSDKYSNYETCSSDDDGEFVGSPC 143

Query: 138 KAK----------SPTPAAESPGHWRFGCRP 140
            +             TP+ +S  +  +GC P
Sbjct: 144 VSSXXXXXXXXXXXXTPSRDSSFNRHYGCGP 170

BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5RP41|A0A2P5RP41_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD14491 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.0e-11
Identity = 56/151 (37.09%), Postives = 77/151 (50.99%), Query Frame = 0

Query: 18  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
           +R+ S+G SSR YYY R+SEG+PF WEM PGTPK   P  E V   I PPP ++SL L K
Sbjct: 24  SRDFSVGCSSRIYYY-RSSEGIPFNWEMQPGTPKE--PQKEDVLPPISPPPALLSLGLPK 83

Query: 78  P---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK----------------FGSPC 137
           P      ++K  +  +F+ W K  K N+N + +DDH+S                  GSPC
Sbjct: 84  PRIDVVKESKVSKLKVFKFW-KHGKKNDNKKKIDDHQSDKYSNYETCSSDDDGEFVGSPC 143

Query: 138 KAK----------SPTPAAESPGHWRFGCRP 140
            +             TP+ +S  +  +GC P
Sbjct: 144 VSSXXXXXXXXXXXXTPSRDSSFNQHYGCGP 170

BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5XWS8|A0A2P5XWS8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12877 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 57/151 (37.75%), Postives = 77/151 (50.99%), Query Frame = 0

Query: 18  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLK 77
           +R+SS+G SSR YYY R+SEG+PF WEM PGTPK   P  E V   I PPP ++SL L  
Sbjct: 24  SRDSSVGCSSRIYYY-RSSEGIPFNWEMQPGTPKE--PQKEEVLPPISPPPALLSLGLPN 83

Query: 78  P---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK----------------FGSPC 137
           P      +NK  +  +F+ W K  K N+N + +DDH+S                  GSPC
Sbjct: 84  PRIDVIEENKGSKLKVFKFW-KHGKKNDNKKKIDDHQSDKYSNYETCSSDDDGEFVGSPC 143

Query: 138 KAKSP----------TPAAESPGHWRFGCRP 140
            + S           T + +S  +  +GC P
Sbjct: 144 VSSSSXXXFSFGSSNTLSRDSSFNRHYGCGP 170

BLAST of Carg15240 vs. TrEMBL
Match: tr|A0A2P5E200|A0A2P5E200_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235740 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.5e-10
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 18  TRNSSMGRSSRSYYYRRT-SEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLL 77
           +RNSS+G SSR YYYR   + G+PFQWEM PGTPK+ PP  E +P  + PPP V+SL L 
Sbjct: 23  SRNSSVGYSSRIYYYRTAGTGGIPFQWEMQPGTPKD-PPKEEALP-PLSPPPAVISLGLP 82

Query: 78  KPATVQNK--QPQFLLFRPWRKQSKSNNNSR 106
           KP  +  +  +P+  L R W++  K+++  R
Sbjct: 83  KPCVIDQEPCKPRRRLIRFWKRSKKNDHQLR 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004146363.13.2e-3656.89PREDICTED: uncharacterized protein LOC101210202 [Cucumis sativus] >KGN65458.1 hy... [more]
XP_023530969.17.8e-3554.22uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo][more]
XP_023007086.15.1e-3453.33uncharacterized protein LOC111499680 [Cucurbita maxima][more]
XP_022930189.16.6e-3453.94uncharacterized protein LOC111436686 [Cucurbita moschata][more]
XP_012461917.11.6e-1137.75PREDICTED: uncharacterized protein LOC105781948 [Gossypium raimondii] >KJB83414.... [more]
Match NameE-valueIdentityDescription
AT4G25845.12.0e-0848.65BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LUL8|A0A0A0LUL8_CUCSA2.1e-3656.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423160 PE=4 SV=1[more]
tr|A0A0D2VJS5|A0A0D2VJS5_GOSRA1.1e-1137.75Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_013G246500 PE=4 ... [more]
tr|A0A2P5RP41|A0A2P5RP41_GOSBA4.0e-1137.09Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD14491 PE=4 SV... [more]
tr|A0A2P5XWS8|A0A2P5XWS8_GOSBA5.2e-1137.75Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA12877 PE=4 SV... [more]
tr|A0A2P5E200|A0A2P5E200_9ROSA7.5e-1047.25Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_235740 PE=4 S... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15240-RACarg15240-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..130
NoneNo IPR availablePANTHERPTHR33257FAMILY NOT NAMEDcoord: 18..101
NoneNo IPR availablePANTHERPTHR33257:SF6SUBFAMILY NOT NAMEDcoord: 18..101

The following gene(s) are paralogous to this gene:

None