Csa1G257320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G257320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12589882 .. 12590373 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGATGAAGATCAAGATGAAGAAATGTAGGGGTAATGTTTTTTTTTATTTGTTCTCTT

mRNA sequence

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA

Coding sequence (CDS)

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA

Protein sequence

MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSILHNLIYFNSPR*
Homology
[Close]
BLAST of Csa1G257320 vs. TrEMBL
Match: A0A0A0LTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 5.7e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120

Query: 121 VSLSYIWFGIFWSILHNLIYFNSPR 146
           VSLSYIWFGIFWSILHNLIYFNSPR
Sbjct: 121 VSLSYIWFGIFWSILHNLIYFNSPR 145

[Close]
BLAST of Csa1G257320 vs. NCBI nr
Match: gi|700210079|gb|KGN65175.1| (hypothetical protein Csa_1G257320 [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 8.2e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120

Query: 121 VSLSYIWFGIFWSILHNLIYFNSPR 146
           VSLSYIWFGIFWSILHNLIYFNSPR
Sbjct: 121 VSLSYIWFGIFWSILHNLIYFNSPR 145

The following BLAST results are available for this feature:
BLAST of Csa1G257320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC2_CUCSA5.7e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1[more]
BLAST of Csa1G257320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210079|gb|KGN65175.1|8.2e-78100.00hypothetical protein Csa_1G257320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU143506cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G257320.1Csa1G257320.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU143506CU143506transcribed_cluster