CsGy1G016320 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G016320
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 13278752 .. 13280858 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGATGAAGATCAAGATGAAGAAATGTAGGGGTAATGTTTTTTTTTATTTGTTCTCTTTTCACTGCCATTGTATGCAAAAGCTGCCATTGTATGCAAAAGCTTTTGTTGATTCAATTTTGATATGAAGAGGATATGGGGATTTGCTTGGTTTTGATCATGAATTTTGTTCTTCAAATTTGTTTTTTTGTTCGCCATAAAGGGAAAAATGGGTGAATTTTGGGGGATTATTCCTTCGTATTTTTACGTTAAGTGGGGAAGCAAATTGAATAGAATTTTGATTTGGGGAACGATATGAGAGGAAAGGAATTATATTCTTTTTATCATCTAAAAGTGACTCATCAGAACAATATTTTCCCATCTCTTCTTCTTCTTCTTCTTCTTCTTCAATTCAAACACACCTTTTCCTTTTTTCCTTCTCCAATCTCTCTTCAAGAACCTTACCTCTTTGGAATCATATTAAAAGCACAATTTTTTTCTTTTTCTTTTTTTCCCATTTTTAAATGAAAATACATCCATTTTTGAGGGGATTCTATACCATCAACTTTTATAATCCTATTATACTCTTTCTTATGTTCATTTAGAAAAATATATGTGAAATTTAGAAAATAACCCTCAACTCTTTTTTTGTTTGTAAAAGTGTTGTAATAAATGCAGTAACCCTTTAACTTTCCTAAATGAATTTATTTAAACTCTTCAACCCAATTTTCTTTGAAAACTACTCTATGAATTTATTTTAAACTTCCATTTTGTAAAATCAATATTTAAAGAACTTTACACATTTAAAAGTTAATATATGCATAATTTTTAAAAGCAATTATAATATATAGTTTTCATATATTAGTTTAAGATTTTAATTGATTAAGATTAGAGTAGCATTTCAAAGATATTTTAAACCATTTTTATTAAAATAGTTTTGAAAAGTGATTTTTTAAAAATACATTTTTCTTAGTCATCCAAACGTCCTAAATTTACTGAAATATCTACTCAAATGCAAGTTCCTTTTTTTTGTTTTTTTTGGTCAATTTGTTGCTATCTTCTTCCTTTCTCTCACAAAAGCACTTTCTATCATAAGTTTCTGTCCATCATCATTATCTTTCCACATAAGTTTACTTTAGGTTTCAGGTTCTGTCTACACACATTTTCTTTTCCTTTTTTGTTTTACATAACTATTATGTAATGTTCTTTACTTCATAGTTAATACATAAAAAGAATCAATAGCCAGATACCTTTTTTAATAAAAAAATATATACACTAAGACTTAAACATAATGATATCTCATCTTGATGATTAATAAATTGCTTATTTTACTTGAAATTAGATAAATGTTATATTCTAAGAATATCATGTGGGTGATACTATTCCCAGAATTTATTAATAATGGCAATCCCTAAGACGAGTCTATTATATTCTAACTTAATTGGTACACTTGATTAAAAGTTCTAAATGCTCGTATACGACTCATTTACATTTACATTTCAAGAAGAATTTACAAAAAAGGGTCCATTTTAAGCCACACATTAAATTACCTAAGAAGTAAGTTTAGAATTCTCTTAAGATTTTTTTTTTTTAAAGAACATTATTTTGTGAGTATATATTCCAATCCATATATGTCTCTATAAGCTATATACACTTTATAGGGGCTACTGTTGGTTTGGTTCTTTTCAGTGTTTAA

mRNA sequence

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGAACATTATTTTTGTTTAA

Coding sequence (CDS)

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGAACATTATTTTTGTTTAA

Protein sequence

MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLTNIIFV

Homology

[Close]

BLAST of CsGy1G016320 vs. NCBI nr
Match: KGN65175.1 (hypothetical protein Csa_1G257320 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 1.6e-54
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRR  HQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRXXHQRAWRRRNYSSHGCRLT 120

[Close]

BLAST of CsGy1G016320 vs. TrEMBL
Match: tr|A0A0A0LTC2|A0A0A0LTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRR  HQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRXXHQRAWRRRNYSSHGCRLT 120

The following BLAST results are available for this feature:

BLAST of CsGy1G016320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65175.1	1.6e-54	98.33	hypothetical protein Csa_1G257320 [Cucumis sativus]	[more]

BLAST of CsGy1G016320 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G016320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G016320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTC2\|A0A0A0LTC2_CUCSA	1.1e-54	98.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257320 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016320.1	CsGy1G016320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G016320	Csa1G257320	Cucumber (Chinese Long) v2	cgybcuB008
CsGy1G016320	CSPI01G17840	Wild cucumber (PI 183967)	cgybcpiB007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G016320	Cucumber (Gy14) v2	cgybcgybB003
CsGy1G016320	Cucurbita maxima (Rimu)	cgybcmaB050
CsGy1G016320	Cucurbita moschata (Rifu)	cgybcmoB047
CsGy1G016320	Cucurbita pepo (Zucchini)	cgybcpeB051
CsGy1G016320	Melon (DHL92) v3.5.1	cgybmeB057
CsGy1G016320	Melon (DHL92) v3.6.1	cgybmedB052
CsGy1G016320	Watermelon (Charleston Gray)	cgybwcgB073
CsGy1G016320	Watermelon (97103) v1	cgybwmB090
CsGy1G016320	Silver-seed gourd	carcgybB0509
CsGy1G016320	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G016320	Cucumber (Chinese Long) v3	cgybcucB006
CsGy1G016320	Watermelon (97103) v2	cgybwmbB074
CsGy1G016320	Wax gourd	cgybwgoB112