CSPI01G17840 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17840
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 13386014 .. 13386451 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA

mRNA sequence

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA

Coding sequence (CDS)

ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAATCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGCATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGCAACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA
Homology
[Close]
BLAST of CSPI01G17840 vs. TrEMBL
Match: A0A0A0LTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120

Query: 121 VSLSYIWFGIFWSILHNLIYFNSPR 146
           VSLSYIWFGIFWSILHNLIYFNSPR
Sbjct: 121 VSLSYIWFGIFWSILHNLIYFNSPR 145

[Close]
BLAST of CSPI01G17840 vs. NCBI nr
Match: gi|700210079|gb|KGN65175.1| (hypothetical protein Csa_1G257320 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1 

Query: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60
           MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL
Sbjct: 1   MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPL 60

Query: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120
           SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT
Sbjct: 61  SNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCRLT 120

Query: 121 VSLSYIWFGIFWSILHNLIYFNSPR 146
           VSLSYIWFGIFWSILHNLIYFNSPR
Sbjct: 121 VSLSYIWFGIFWSILHNLIYFNSPR 145

The following BLAST results are available for this feature:
BLAST of CSPI01G17840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G17840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC2_CUCSA1.2e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1[more]
BLAST of CSPI01G17840 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G17840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210079|gb|KGN65175.1|1.8e-72100.00hypothetical protein Csa_1G257320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17840.1CSPI01G17840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17840Csa1G257320Cucumber (Chinese Long) v2cpicuB004
CSPI01G17840MELO3C010208Melon (DHL92) v3.5.1cpimeB057
CSPI01G17840MELO3C010208.2Melon (DHL92) v3.6.1cpimedB051
CSPI01G17840CsGy1G016320Cucumber (Gy14) v2cgybcpiB007
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17840Silver-seed gourdcarcpiB0138
CSPI01G17840Silver-seed gourdcarcpiB0539
CSPI01G17840Silver-seed gourdcarcpiB0951
CSPI01G17840Cucumber (Chinese Long) v3cpicucB000
CSPI01G17840Cucumber (Chinese Long) v3cpicucB020
CSPI01G17840Cucumber (Chinese Long) v3cpicucB040
CSPI01G17840Watermelon (97103) v2cpiwmbB068
CSPI01G17840Watermelon (97103) v2cpiwmbB067
CSPI01G17840Wax gourdcpiwgoB006
CSPI01G17840Wax gourdcpiwgoB076
CSPI01G17840Wax gourdcpiwgoB099
CSPI01G17840Wild cucumber (PI 183967)cpicpiB006
CSPI01G17840Wild cucumber (PI 183967)cpicpiB027
CSPI01G17840Cucumber (Gy14) v1cgycpiB096
CSPI01G17840Cucumber (Gy14) v1cgycpiB268
CSPI01G17840Cucumber (Gy14) v1cgycpiB407
CSPI01G17840Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17840Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17840Cucurbita maxima (Rimu)cmacpiB164
CSPI01G17840Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17840Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17840Cucurbita moschata (Rifu)cmocpiB149
CSPI01G17840Cucumber (Chinese Long) v2cpicuB014
CSPI01G17840Cucumber (Chinese Long) v2cpicuB035
CSPI01G17840Melon (DHL92) v3.5.1cpimeB075
CSPI01G17840Watermelon (Charleston Gray)cpiwcgB070
CSPI01G17840Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17840Watermelon (97103) v1cpiwmB086
CSPI01G17840Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17840Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G17840Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G17840Bottle gourd (USVL1VR-Ls)cpilsiB064
CSPI01G17840Bottle gourd (USVL1VR-Ls)cpilsiB075
CSPI01G17840Melon (DHL92) v3.6.1cpimedB067
CSPI01G17840Melon (DHL92) v3.6.1cpimedB072
CSPI01G17840Cucumber (Gy14) v2cgybcpiB002
CSPI01G17840Cucumber (Gy14) v2cgybcpiB050
CSPI01G17840Cucumber (Gy14) v2cgybcpiB162