MELO3C010208 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C010208
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionlow-molecular-weight cysteine-rich 45
Locationchr2 : 14603400 .. 14604687 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAATTTACCTCAAATCAATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCACCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTATGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCTTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

mRNA sequence

TAATGATTTTCGTGGTGAAATTCAAAAGCAACAAAACGAAGTTTCCCAGAACTAAGAAAATCTCATATTTTCCCGGAAAATGTTTACGATTGTAAAATTCCCCCAATTTCAATAACCCTCAAACATATATAAATCTATACCCTCACTCACAAATTTACCTCAAATCAATTCTCTTTCTCTTAATCAATCCTCCAATGGCCGCAATTCACCGCTTCTTACTTCCGCTTGCCCTAATTTCTCTTCTCCTTTTCTCTGAATCTCTCGCAGCCATCTCCTCTACCGATCATGGCCAGAATTCTAATCGGCGAGGGGACAAGGGTTCCGACACCTCCTTGGCCGGAAAGATCATTAGTAAAAGAGGAGTTCGGTCCGGCGTAACTGCAGGTCGTTCGACTTCGTCGTCGTCCGCCCAAATGTCGTCGTCGTTCTTTAATGTCGGCTCTTTGATTTGTTTCAACATAGCGTTTGTGTTTGCGATGTTCTTGTGAATTTTTGACTCTTATACGATGCTCCATTCAATTCATTTAATTTTTGTTACACAAACTTAAAGCTCGTTGGGATCAAATTGCAAAAACAATCGATCGTGTTCATGCAAATTGTTTGTTTGATTTGAGCCGTTCAATTTTATATATAGTATTAATAGGTCGATTTGATTTAGCATTTGATTCACAAATCAAAAACCAAACTGCACCAAAAGAATTCATATCCATGGCTGATCTTATATGGTTATGAATGGATTATACAAATTTGAACGAAAAAAGAAAAAAGCTTCAAATTCAAACCCTTCTAATATTAGTCTCTTCCTTTTTATGTTTCTCCTTTCCTTCTTCTTTCAATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

Coding sequence (CDS)

ATGGATTTCCCATTCCCGTTCTCATTCCCTCATAAATTCATATCCATGGCTGATCCTAAACCCCTCCATGTTCTCTTAATAATGGCGCCTCTTCTTCTTCTTCTGGCCTCACAACTCAACTCGATCTTCGCTCAAACAGATTCACCAACTCCTCCCAATCTTCCCCAACAAACAATCAACAAAGAACGCCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCAGCTCGAAACAATACCAAAGCGCATCGTCGTGATCAACTCGCCGGTACTAGACTCTCTCTCAAACGCTTGAGATCTAATCGTGATTCGATTCGGAAACGTCGAAGACGCAATCACCTACGTGCTTGGCATCGCAGCTATTCCTCCCGTGGTTGTCTTCCGACGGTTTCTTTGTTGTACATTTGGTTCGGAATTCTTTGGTCCATTTCTGCATAA

Protein sequence

MDFPFPFSFPHKFISMADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKERLPSSDPHLSPPLSNQRAARNNTKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAWHRSYSSRGCLPTVSLLYIWFGILWSISA*
Homology
[Close]
BLAST of MELO3C010208 vs. TrEMBL
Match: A0A0A0LTC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.3e-47
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKER-LPSSDPHLSPP 75
           MAD KPLHVLLI+APLL+L ASQLN IFA TDS TP NLPQQT N+E  LPSSDPHLSPP
Sbjct: 1   MADLKPLHVLLIIAPLLIL-ASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPP 60

Query: 76  LSNQRAARNN-TKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAW-HRSYSSRGCL 135
           LSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKRRRRNH RAW  R+YSS GC 
Sbjct: 61  LSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCR 120

Query: 136 PTVSLLYIWFGILWSI 149
            TVSL YIWFGI WSI
Sbjct: 121 LTVSLSYIWFGIFWSI 134

[Close]
BLAST of MELO3C010208 vs. NCBI nr
Match: gi|700210079|gb|KGN65175.1| (hypothetical protein Csa_1G257320 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 107/136 (78.68%), Postives = 115/136 (84.56%), Query Frame = 1 

Query: 16  MADPKPLHVLLIMAPLLLLLASQLNSIFAQTDSPTPPNLPQQTINKER-LPSSDPHLSPP 75
           MAD KPLHVLLI+APLL+L ASQLN IFA TDS TP NLPQQT N+E  LPSSDPHLSPP
Sbjct: 1   MADLKPLHVLLIIAPLLIL-ASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPP 60

Query: 76  LSNQRAARNN-TKAHRRDQLAGTRLSLKRLRSNRDSIRKRRRRNHLRAW-HRSYSSRGCL 135
           LSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKRRRRNH RAW  R+YSS GC 
Sbjct: 61  LSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRRNYSSHGCR 120

Query: 136 PTVSLLYIWFGILWSI 149
            TVSL YIWFGI WSI
Sbjct: 121 LTVSLSYIWFGIFWSI 134

The following BLAST results are available for this feature:
BLAST of MELO3C010208 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC2_CUCSA9.3e-4778.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257320 PE=4 SV=1[more]
BLAST of MELO3C010208 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210079|gb|KGN65175.1|1.3e-4678.68hypothetical protein Csa_1G257320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU47373melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010208T1MELO3C010208T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU47373MU47373transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C010208Csa1G257320Cucumber (Chinese Long) v2cumeB060
MELO3C010208CSPI01G17840Wild cucumber (PI 183967)cpimeB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C010208Cucurbita moschata (Rifu)cmomeB098
MELO3C010208Cucumber (Gy14) v1cgymeB101
MELO3C010208Cucumber (Gy14) v1cgymeB304
MELO3C010208Cucumber (Gy14) v1cgymeB452
MELO3C010208Cucurbita maxima (Rimu)cmameB058
MELO3C010208Cucurbita maxima (Rimu)cmameB105
MELO3C010208Cucurbita maxima (Rimu)cmameB154
MELO3C010208Cucurbita moschata (Rifu)cmomeB049
MELO3C010208Cucurbita moschata (Rifu)cmomeB144
MELO3C010208Wild cucumber (PI 183967)cpimeB112
MELO3C010208Wild cucumber (PI 183967)cpimeB279
MELO3C010208Cucumber (Chinese Long) v2cumeB113
MELO3C010208Cucumber (Chinese Long) v2cumeB289
MELO3C010208Watermelon (Charleston Gray)mewcgB253
MELO3C010208Watermelon (Charleston Gray)mewcgB258
MELO3C010208Watermelon (97103) v1mewmB278
MELO3C010208Watermelon (97103) v1mewmB293
MELO3C010208Cucurbita pepo (Zucchini)cpemeB334
MELO3C010208Cucurbita pepo (Zucchini)cpemeB621
MELO3C010208Cucurbita pepo (Zucchini)cpemeB752
MELO3C010208Bottle gourd (USVL1VR-Ls)lsimeB104
MELO3C010208Bottle gourd (USVL1VR-Ls)lsimeB402
MELO3C010208Bottle gourd (USVL1VR-Ls)lsimeB404
MELO3C010208Cucumber (Gy14) v2cgybmeB049
MELO3C010208Cucumber (Gy14) v2cgybmeB057
MELO3C010208Cucumber (Gy14) v2cgybmeB097
MELO3C010208Silver-seed gourdcarmeB0131
MELO3C010208Silver-seed gourdcarmeB0509
MELO3C010208Silver-seed gourdcarmeB0898
MELO3C010208Cucumber (Chinese Long) v3cucmeB054
MELO3C010208Cucumber (Chinese Long) v3cucmeB118
MELO3C010208Cucumber (Chinese Long) v3cucmeB285
MELO3C010208Watermelon (97103) v2mewmbB259
MELO3C010208Watermelon (97103) v2mewmbB265
MELO3C010208Wax gourdmewgoB266
MELO3C010208Wax gourdmewgoB290
MELO3C010208Melon (DHL92) v3.5.1memeB108
MELO3C010208Melon (DHL92) v3.5.1memeB116