Csa1G256770 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G256770
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12565846 .. 12566643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGGAGAGAAAGGAAGATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGAGGGAACACCCATTTTTAAGAAAAGAAGGGTTTGTTTGTGTATGTGTGTATGTGAGTGATTGTGAAGTGGGTTTGGTTGGAGGACATTAGAAAGACATCTATCTATCCATCTATCTATCCATCCATTCCATCTTCACTTTCTTTTTTGGTTTTTCTTCCTAACATAAATTTTGGTCCAGCTGGGCCATTAAAAGCTTTGTGAATGTGAATGAAAGAGAAAGAAACAAAGCAAACCACAGCACAGCAAGAAAGAAAAGAAAGATAGAAAGAAAGCAAGACAGAATTTTGAGTGGTAAAGACTCTTCCTTGTCGTTGATGTGTGGAGTTTCTCTGTTTCTTCTTCCTTTTTTTTTTTTTTTTTTTGTTTCCTGTAAGGAGAGAGAAAGAAATCTAGACTTCTAGAGAGAGATACAAAAAGGGAAAGAGTAGTAAAATTTGAGGCCTTCTTCTTCATCCAGCAAAATTTTGCCTTTTTTTCTTTTTTCT

mRNA sequence

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Coding sequence (CDS)

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Protein sequence

MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEALTKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN*
Homology
[Close]
BLAST of Csa1G256770 vs. TrEMBL
Match: A0A0A0LTQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

[Close]
BLAST of Csa1G256770 vs. NCBI nr
Match: gi|700210072|gb|KGN65168.1| (hypothetical protein Csa_1G256770 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

The following BLAST results are available for this feature:
BLAST of Csa1G256770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ7_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1[more]
BLAST of Csa1G256770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210072|gb|KGN65168.1|2.1e-48100.00hypothetical protein Csa_1G256770 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU086020cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G256770.1Csa1G256770.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU086020CU086020transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..44
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G256770ClCG06G012470Watermelon (Charleston Gray)cuwcgB072
Csa1G256770CSPI01G17770Wild cucumber (PI 183967)cpicuB004
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G256770Melon (DHL92) v3.6.1cumedB053
Csa1G256770Silver-seed gourdcarcuB0136
Csa1G256770Silver-seed gourdcarcuB0532
Csa1G256770Watermelon (97103) v2cuwmbB071
Csa1G256770Wax gourdcuwgoB103
Csa1G256770Cucumber (Gy14) v1cgycuB099
Csa1G256770Cucurbita maxima (Rimu)cmacuB067
Csa1G256770Cucurbita maxima (Rimu)cmacuB102
Csa1G256770Cucurbita moschata (Rifu)cmocuB056
Csa1G256770Cucurbita moschata (Rifu)cmocuB091
Csa1G256770Melon (DHL92) v3.5.1cumeB060
Csa1G256770Watermelon (97103) v1cuwmB085
Csa1G256770Cucurbita pepo (Zucchini)cpecuB356
Csa1G256770Cucurbita pepo (Zucchini)cpecuB641
Csa1G256770Bottle gourd (USVL1VR-Ls)culsiB066
Csa1G256770Bottle gourd (USVL1VR-Ls)culsiB076
Csa1G256770Cucumber (Gy14) v2cgybcuB006
Csa1G256770Cucumber (Gy14) v2cgybcuB008