CU086020 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU086020
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRibosomal RNA small subunit methyltransferase G
LocationChr1 : 12566532 .. 12567626 (+)
Sequence length339
The following sequences are available for this feature:

transcribed_cluster sequence

CCGGGGATTTCTCTTCTTTTTCTCTTTCTTCTTTGTCCTTGCCTCTTCTTCTTCTTCACCCACTTTCTCTATTTTCTTCCCTACTTCTTCATTACCCATCTTCCTTTCTCTCCTTCTTTCCCATTCATCTAACTTTTTCCCTCTTTTCCCTTCTGGGTTTTTGTTTTCTTTCCTTCCTTCTCATCTATGAAGAAGATGAAGGGAGTTGTCTCTCAATACCCTGTTTACGAGGATTCCAAGACTAGATTCAAGCGTCAGAGTCTCCTCCAAGATTATCGTGACTTGGAGAAGGAAACAGGGACTGTCAAGAGGAAATTACAAATGATGAAGCAAAAGAAG
Library categoryESTs
fruit (8DPP) library3
BLAST of CU086020 vs. TrEMBL
Match: A0A0A0LW13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256780 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 187 MKKMKGVVSQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGVVSQYPVYEDSKTRFK QSLLQDY DLEKETGTVKRKLQMMKQKK
Sbjct: 1   MKKMKGVVSQYPVYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKK 51

Query: 247 306
           
Sbjct: 61  51

Query: 307 340
           
Sbjct: 121 51

BLAST of CU086020 vs. TrEMBL
Match: A0A0B0NU00_GOSAR (Ribosomal RNA small subunit methyltransferase G OS=Gossypium arboreum GN=F383_10342 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 187 MKKMKGVV-----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV      S YP+YED +TRFK QSL+QD+ DL KET  ++ KLQMMK++K
Sbjct: 1   MKKMKGVAASMGYSPYPMYEDQRTRFKHQSLMQDFEDLHKETEAMRMKLQMMKERK 56

Query: 247 306
           
Sbjct: 61  56

Query: 307 340
           
Sbjct: 121 56

BLAST of CU086020 vs. TrEMBL
Match: A0A0D2QK29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G032800 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 187 MKKMKGVV-----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV      S YP+YED +TRFK QSL+QD+ DL KET  ++ KLQMMK++K
Sbjct: 1   MKKMKGVAASMGYSPYPMYEDQRTRFKHQSLMQDFEDLHKETEAMRMKLQMMKEQK 56

Query: 247 306
           
Sbjct: 61  56

Query: 307 340
           
Sbjct: 121 56

BLAST of CU086020 vs. TrEMBL
Match: A0A0D2PU39_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G032800 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-09
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 187 MKKMKGVV-----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV      S YP+YED +TRFK QSL+QD+ DL KET  ++ KLQMMK++K
Sbjct: 1   MKKMKGVAASMGYSPYPMYEDQRTRFKHQSLMQDFEDLHKETEAMRMKLQMMKEQK 56

Query: 247 306
           
Sbjct: 61  56

Query: 307 340
           
Sbjct: 121 56

BLAST of CU086020 vs. TrEMBL
Match: M5VX06_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013045mg PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-09
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1

Query: 187 MKKMKGVV----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV+    S Y  YED +TRFK QSL+QDY +L+K+   +K+KLQMMKQKK
Sbjct: 1   MKKMKGVLAMEPSSYAGYEDPRTRFKHQSLMQDYEELQKDAEAMKKKLQMMKQKK 55

Query: 247 306
           
Sbjct: 61  55

Query: 307 340
           
Sbjct: 121 55

BLAST of CU086020 vs. NCBI nr
Match: gi|700210073|gb|KGN65169.1| (hypothetical protein Csa_1G256780 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 187 MKKMKGVVSQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGVVSQYPVYEDSKTRFK QSLLQDY DLEKETGTVKRKLQMMKQKK
Sbjct: 1   MKKMKGVVSQYPVYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKK 51

Query: 247 306
           
Sbjct: 61  51

Query: 307 340
           
Sbjct: 121 51

BLAST of CU086020 vs. NCBI nr
Match: gi|659086278|ref|XP_008443848.1| (PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 187 MKKMKGVVSQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGVVSQYPVYEDSKTRFK QSLLQDY DLEKETGTVKRKLQMMKQKK
Sbjct: 1   MKKMKGVVSQYPVYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKK 51

Query: 247 306
           
Sbjct: 61  51

Query: 307 340
           
Sbjct: 121 51

BLAST of CU086020 vs. NCBI nr
Match: gi|778665044|ref|XP_011648472.1| (PREDICTED: uncharacterized protein LOC101209712 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1

Query: 187 MKKMKGVVSQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGVVSQYPVYEDSKTRFK QSLLQDY DLEKETGTVKRKLQMMKQKK
Sbjct: 1   MKKMKGVVSQYPVYEDSKTRFKHQSLLQDYHDLEKETGTVKRKLQMMKQKK 51

Query: 247 306
           
Sbjct: 61  51

Query: 307 340
           
Sbjct: 121 51

BLAST of CU086020 vs. NCBI nr
Match: gi|728835133|gb|KHG14576.1| (Ribosomal RNA small subunit methyltransferase G [Gossypium arboreum])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 187 MKKMKGVV-----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV      S YP+YED +TRFK QSL+QD+ DL KET  ++ KLQMMK++K
Sbjct: 1   MKKMKGVAASMGYSPYPMYEDQRTRFKHQSLMQDFEDLHKETEAMRMKLQMMKERK 56

Query: 247 306
           
Sbjct: 61  56

Query: 307 340
           
Sbjct: 121 56

BLAST of CU086020 vs. NCBI nr
Match: gi|823120909|ref|XP_012444344.1| (PREDICTED: uncharacterized protein LOC105768726 [Gossypium raimondii])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1

Query: 187 MKKMKGVV-----SQYPVYEDSKTRFKRQSLLQDYRDLEKETGTVKRKLQMMKQKK 246
           MKKMKGV      S YP+YED +TRFK QSL+QD+ DL KET  ++ KLQMMK++K
Sbjct: 1   MKKMKGVAASMGYSPYPMYEDQRTRFKHQSLMQDFEDLHKETEAMRMKLQMMKEQK 56

Query: 247 306
           
Sbjct: 61  56

Query: 307 340
           
Sbjct: 121 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LW13_CUCSA1.8e-1896.08Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256780 PE=4 SV=1[more]
A0A0B0NU00_GOSAR2.0e-0960.71Ribosomal RNA small subunit methyltransferase G OS=Gossypium arboreum GN=F383_10... [more]
A0A0D2QK29_GOSRA2.6e-0960.71Uncharacterized protein OS=Gossypium raimondii GN=B456_001G032800 PE=4 SV=1[more]
A0A0D2PU39_GOSRA2.6e-0960.71Uncharacterized protein OS=Gossypium raimondii GN=B456_001G032800 PE=4 SV=1[more]
M5VX06_PRUPE5.7e-0961.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013045mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700210073|gb|KGN65169.1|1.8e-1696.08hypothetical protein Csa_1G256780 [Cucumis sativus][more]
gi|659086278|ref|XP_008443848.1|1.8e-1696.08PREDICTED: uncharacterized protein LOC103487344 [Cucumis melo][more]
gi|778665044|ref|XP_011648472.1|1.8e-1696.08PREDICTED: uncharacterized protein LOC101209712 [Cucumis sativus][more]
gi|728835133|gb|KHG14576.1|2.0e-0760.71Ribosomal RNA small subunit methyltransferase G [Gossypium arboreum][more]
gi|823120909|ref|XP_012444344.1|2.6e-0760.71PREDICTED: uncharacterized protein LOC105768726 [Gossypium raimondii][more]
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G256780Csa1G256780gene
Csa1G256770Csa1G256770gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02K90ZOFKNP3UI02K90ZOEST
FKNP3UI02M34AKFKNP3UI02M34AKEST
FKNP3UI02OKMUOFKNP3UI02OKMUOEST


Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..30
scor