CSPI01G17770 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17770
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 13357024 .. 13357317 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

mRNA sequence

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Coding sequence (CDS)

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA
Homology
[Close]
BLAST of CSPI01G17770 vs. TrEMBL
Match: A0A0A0LTQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.8e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

[Close]
BLAST of CSPI01G17770 vs. NCBI nr
Match: gi|700210072|gb|KGN65168.1| (hypothetical protein Csa_1G256770 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 4.0e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

The following BLAST results are available for this feature:
BLAST of CSPI01G17770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G17770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ7_CUCSA2.8e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1[more]
BLAST of CSPI01G17770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G17770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210072|gb|KGN65168.1|4.0e-44100.00hypothetical protein Csa_1G256770 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17770.1CSPI01G17770.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..44
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17770Csa1G256770Cucumber (Chinese Long) v2cpicuB004
CSPI01G17770ClCG06G012470Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17770CsaV3_1G029040Cucumber (Chinese Long) v3cpicucB000
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17770Silver-seed gourdcarcpiB0138
CSPI01G17770Silver-seed gourdcarcpiB0539
CSPI01G17770Cucumber (Chinese Long) v3cpicucB020
CSPI01G17770Cucumber (Chinese Long) v3cpicucB040
CSPI01G17770Watermelon (97103) v2cpiwmbB068
CSPI01G17770Watermelon (97103) v2cpiwmbB067
CSPI01G17770Wax gourdcpiwgoB006
CSPI01G17770Wax gourdcpiwgoB076
CSPI01G17770Wax gourdcpiwgoB099
CSPI01G17770Wild cucumber (PI 183967)cpicpiB006
CSPI01G17770Wild cucumber (PI 183967)cpicpiB027
CSPI01G17770Cucumber (Gy14) v1cgycpiB100
CSPI01G17770Cucumber (Gy14) v1cgycpiB096
CSPI01G17770Cucumber (Gy14) v1cgycpiB407
CSPI01G17770Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17770Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17770Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17770Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17770Cucumber (Chinese Long) v2cpicuB014
CSPI01G17770Cucumber (Chinese Long) v2cpicuB035
CSPI01G17770Melon (DHL92) v3.5.1cpimeB057
CSPI01G17770Melon (DHL92) v3.5.1cpimeB075
CSPI01G17770Watermelon (Charleston Gray)cpiwcgB070
CSPI01G17770Watermelon (97103) v1cpiwmB086
CSPI01G17770Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17770Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G17770Bottle gourd (USVL1VR-Ls)cpilsiB010
CSPI01G17770Bottle gourd (USVL1VR-Ls)cpilsiB064
CSPI01G17770Bottle gourd (USVL1VR-Ls)cpilsiB075
CSPI01G17770Melon (DHL92) v3.6.1cpimedB051
CSPI01G17770Melon (DHL92) v3.6.1cpimedB067
CSPI01G17770Melon (DHL92) v3.6.1cpimedB072
CSPI01G17770Cucumber (Gy14) v2cgybcpiB002
CSPI01G17770Cucumber (Gy14) v2cgybcpiB007
CSPI01G17770Cucumber (Gy14) v2cgybcpiB050
CSPI01G17770Cucumber (Gy14) v2cgybcpiB162