Csa1G256770.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G256770.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12565846 .. 12566643 (-)
Sequence length294
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGAAGGAGAGAAAGGAAGATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGAGGGAACACCCATTTTTAAGAAAAGAAGGGTTTGTTTGTGTATGTGTGTATGTGAGTGATTGTGAAGTGGGTTTGGTTGGAGGACATTAGAAAGACATCTATCTATCCATCTATCTATCCATCCATTCCATCTTCACTTTCTTTTTTGGTTTTTCTTCCTAACATAAATTTTGGTCCAGCTGGGCCATTAAAAGCTTTGTGAATGTGAATGAAAGAGAAAGAAACAAAGCAAACCACAGCACAGCAAGAAAGAAAAGAAAGATAGAAAGAAAGCAAGACAGAATTTTGAGTGGTAAAGACTCTTCCTTGTCGTTGATGTGTGGAGTTTCTCTGTTTCTTCTTCCTTTTTTTTTTTTTTTTTTTGTTTCCTGTAAGGAGAGAGAAAGAAATCTAGACTTCTAGAGAGAGATACAAAAAGGGAAAGAGTAGTAAAATTTGAGGCCTTCTTCTTCATCCAGCAAAATTTTGCCTTTTTTTCTTTTTTCT

mRNA sequence

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Coding sequence (CDS)

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Protein sequence

MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEALTKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN*
Homology
[Close]
BLAST of Csa1G256770.1 vs. TrEMBL
Match: A0A0A0LTQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

[Close]
BLAST of Csa1G256770.1 vs. NCBI nr
Match: gi|700210072|gb|KGN65168.1| (hypothetical protein Csa_1G256770 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 2.1e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

The following BLAST results are available for this feature:
BLAST of Csa1G256770.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ7_CUCSA1.4e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256770 PE=4 SV=1[more]
BLAST of Csa1G256770.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210072|gb|KGN65168.1|2.1e-48100.00hypothetical protein Csa_1G256770 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G256770Csa1G256770gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G256770.1Csa1G256770.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256770.1.utr3p1Csa1G256770.1.utr3p1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256770.1.cds1Csa1G256770.1.cds1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G256770.1.utr5p1Csa1G256770.1.utr5p1five_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 10..44
scor