Csa1G195230 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G195230
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 11494777 .. 11496416 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTCGATCCTTGGTTGGTTTTCTCCCCTCTCCTCGTTTTCTCTTTGTTCCTCCAAACACTAGAAGTTGAACTCTAAAGAAGATTCATATTTTTTCTTGCCTCGTCTTTGGAAGGATCATTTGCTTATACTTTGTTTAAAGAGGCTCGTTGACCCTGTAAGTGTATATAGTGTAAATGTGTTACTGAAGATTTGAATCACTTCGTTACAAGTTTTCCTTTTGCTTTGCTTCGAAGGTGTGGGGGTCATTTGTGGCCAGACATTTTTGTATCTCTTTGGTTTAGAGGATGGGTCTGAGATGATGATTAAAGAAAGGCTGTTTTGGTTTCAATGTTTTGGGATAAAGATTGCTTACTGTAGCGAGTCATCTGTTGATGTTTTGTTAGTTTTCATACAAGAAAGACAACTTTTTTACTCTATTTTAAAAATTTAGATAGTTCCTAGGATATGTGGAGTTTTGGTTTTGGACATAATATCTCTCTTTTAGTGTTATACTCCGGGGGGTGGGGGGTTAATATTAATCACCAAAAGTTGGGTTCTTTTCAAGGGATCACCAACAGTTGGGTTCTTTTTCTAGGTACCATTTGTCTTAATGGAAGATGGTGGTGAAGCTTCATAATTATGATTGACGTACACATCTAAATCATAAATAAGTGGAATGTTTAGAAGTTCTAAAGTGCATTTATTTGTCTTCGTGTGCAGATTGCTGTGTTAGAGGAACAAAAAAACGAGGCTGCAGAAAATGAAGCCACTGATAATGTCGAAGATGAAGCTTTAGAATCAGATGATGTTGAACCAAGTAGTACAGTAGCAACCAAGGGGGAGCTTCAAGATGAGAAACCAGATATTAATGACGTGCCAATGGAAGAAAGTCAGGTAAATTATATTTTGTTGTCTTACTAAGTAATTTCAATCTGCCACGTTATACGTTTCTGGGTTCTTTAGTGAGTATTGAGTACTCTTAAGTTTTCAAAATTAGTTATACACGCAATGCTCCATAAGCTCAATGTAAACTGATGAGCTATACAACTCTGAACTTATTTTCAGTAACCTTTGGAACTAAGCTTCATCTTTCTCTAGTGTAACACATGTATAATGGTCGGCCTTTTGATTTCATCAGTCTCAGGACAACGATCGTCCAGTGCGTCAAGATTTGAACGAAAGCACTTTGGATTTAAGTCTGAACTTGAATGCTCTCGACGATGGCGGCGAAGCTAGTTCAAAAGCTGATCACATTAGAGATGGCAAGAGAAAGGGCTAACCTTAGATTTTCTGGATTGCTTGGACCTGTCATTTTACATTAGAGAAGCAGCTACAGTCTAGTCCTTGCCAATTCAATTCTCTTATTGGGACTGAGTTACTTGACATCCCACATCTCTGCTAATCCTGGAAGTATATCGTTTCTCTCTAGTATGATTACATATTCTAATCTTGATTTGTTCACAGAAAATATACAGTACCAATTTTTTGATCCTTAAAATTCGATATCAATGTAAGAAACTGTTACGAGAGGCAAAGAAATTGTGTACGATTATCCACATGTTGAGATTTTAGCTTTGTTTGATTTCACTGTTAAAATGATCGTCTAATGAACTCACAATCCCTGCTATTTCAATTGATATATGACGTTTATTCCA

mRNA sequence

ATGGAAGTCGATCCTTGGTTGATTGCTGTGTTAGAGGAACAAAAAAACGAGGCTGCAGAAAATGAAGCCACTGATAATGTCGAAGATGAAGCTTTAGAATCAGATGATGTTGAACCAAGTAGTACAGTAGCAACCAAGGGGGAGCTTCAAGATGAGAAACCAGATATTAATGACGTGCCAATGGAAGAAAGTCAGTCTCAGGACAACGATCGTCCAGTGCGTCAAGATTTGAACGAAAGCACTTTGGATTTAAGTCTGAACTTGAATGCTCTCGACGATGGCGGCGAAGCTAGTTCAAAAGCTGATCACATTAGAGATGGCAAGAGAAAGGGCTAA

Coding sequence (CDS)

ATGGAAGTCGATCCTTGGTTGATTGCTGTGTTAGAGGAACAAAAAAACGAGGCTGCAGAAAATGAAGCCACTGATAATGTCGAAGATGAAGCTTTAGAATCAGATGATGTTGAACCAAGTAGTACAGTAGCAACCAAGGGGGAGCTTCAAGATGAGAAACCAGATATTAATGACGTGCCAATGGAAGAAAGTCAGTCTCAGGACAACGATCGTCCAGTGCGTCAAGATTTGAACGAAAGCACTTTGGATTTAAGTCTGAACTTGAATGCTCTCGACGATGGCGGCGAAGCTAGTTCAAAAGCTGATCACATTAGAGATGGCAAGAGAAAGGGCTAA

Protein sequence

MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG*

Homology

[Close]

BLAST of Csa1G195230 vs. TrEMBL
Match: A0A0A0LVV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195230 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP 60
           MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP
Sbjct: 1   MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP 60

Query: 61  MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG
Sbjct: 61  MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 111

[Close]

BLAST of Csa1G195230 vs. TrEMBL
Match: A0A0B2RI94_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009966 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           +A+LEEQKNEAAENE T+ V++E+   D    ++    K E  DEKPDINDVPMEESQSQ
Sbjct: 101 VALLEEQKNEAAENEGTEKVDEESKPIDVDSGAAEATRKNETLDEKPDINDVPMEESQSQ 160

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGK 109
             ++ VRQDLNESTLDLSL L + DD  ++ SK +  RDG+
Sbjct: 161 YKNQVVRQDLNESTLDLSLGLTSHDDEHDSDSKTNQTRDGQ 201

[Close]

BLAST of Csa1G195230 vs. TrEMBL
Match: C6T475_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           +A+LEEQKNEAAENE T+ V++E+   D    ++    K E  DEKPDINDVPMEESQSQ
Sbjct: 101 VALLEEQKNEAAENEGTEKVDEESKPIDVDSGAAEATRKNETLDEKPDINDVPMEESQSQ 160

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGK 109
             ++ VRQDLNESTLDLSL L + DD  ++ SK +  RDG+
Sbjct: 161 YKNQVVRQDLNESTLDLSLGLTSHDDEHDSDSKTNQTRDGQ 201

[Close]

BLAST of Csa1G195230 vs. TrEMBL
Match: I1MFM6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G113900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           +A+LEEQKNEAAENE T+ V++E+   D    ++    K E  DEKPDINDVPMEESQSQ
Sbjct: 101 VALLEEQKNEAAENEGTEKVDEESKPIDVDSGAAEATRKNETLDEKPDINDVPMEESQSQ 160

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGK 109
             ++ VRQDLNESTLDLSL L + DD  ++ SK +  RDG+
Sbjct: 161 YKNQVVRQDLNESTLDLSLGLTSHDDEHDSDSKTNQTRDGQ 201

[Close]

BLAST of Csa1G195230 vs. TrEMBL
Match: A0A151T6P9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017241 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-22
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           +A+LEEQ+NEAAENE  + V+D++   D    ++  A K E  DEKPDINDVPMEESQSQ
Sbjct: 4   VALLEEQRNEAAENEGAEKVDDDSKPIDSDSGAADPARKNETLDEKPDINDVPMEESQSQ 63

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGK 109
             ++ VRQDLNESTLDLSL L + DD  ++ SK +  RDG+
Sbjct: 64  YKNQVVRQDLNESTLDLSLGLTSHDDEHDSDSKTNQARDGQ 104

[Close]

BLAST of Csa1G195230 vs. TAIR10
Match: AT4G22320.1 (AT4G22320.1 unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 9.6e-16
Identity = 51/115 (44.35%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDE--------ALESDDVEPSSTVATKGELQ-----DEKP 67
           IAVLEEQK E  E E  D +E++          + D V+   TV    E +     +EKP
Sbjct: 119 IAVLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVEVEEKP 178

Query: 68  DINDVPMEESQS-------QDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKAD 103
           DINDVPME+ Q         D ++ VRQDLNEST+DL LNLNA D   E   K D
Sbjct: 179 DINDVPMEDIQQVEEKIVQDDEEKVVRQDLNESTVDLGLNLNANDADAENDPKED 233

[Close]

BLAST of Csa1G195230 vs. NCBI nr
Match: gi|700209983|gb|KGN65079.1| (hypothetical protein Csa_1G195230 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.4e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP 60
           MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP
Sbjct: 1   MEVDPWLIAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVP 60

Query: 61  MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG
Sbjct: 61  MEESQSQDNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 111

[Close]

BLAST of Csa1G195230 vs. NCBI nr
Match: gi|449465421|ref|XP_004150426.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ
Sbjct: 116 IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 175

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG
Sbjct: 176 DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 219

[Close]

BLAST of Csa1G195230 vs. NCBI nr
Match: gi|778659850|ref|XP_011655175.1| (PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 102/104 (98.08%), Postives = 102/104 (98.08%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEE  SQ
Sbjct: 116 IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEE--SQ 175

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG
Sbjct: 176 DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 217

[Close]

BLAST of Csa1G195230 vs. NCBI nr
Match: gi|659118143|ref|XP_008458968.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo])

HSP 1 Score: 194.5 bits (493), Expect = 9.9e-47
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           IAVLEEQKNEAAENEA D+VEDEA++S+DVEPSSTVATKGELQDEKPDINDVPMEESQSQ
Sbjct: 116 IAVLEEQKNEAAENEAADDVEDEAIKSNDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 175

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           DND PVRQDLNESTLDLSLNLNALDDGGE SSKADHIRDGKRKG
Sbjct: 176 DNDHPVRQDLNESTLDLSLNLNALDDGGETSSKADHIRDGKRKG 219

[Close]

BLAST of Csa1G195230 vs. NCBI nr
Match: gi|659118145|ref|XP_008458970.1| (PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.5e-44
Identity = 95/104 (91.35%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 8   IAVLEEQKNEAAENEATDNVEDEALESDDVEPSSTVATKGELQDEKPDINDVPMEESQSQ 67
           IAVLEEQKNEAAENEA D+VEDEA++S+DVEPSSTVATKGELQDEKPDINDVPMEE  SQ
Sbjct: 116 IAVLEEQKNEAAENEAADDVEDEAIKSNDVEPSSTVATKGELQDEKPDINDVPMEE--SQ 175

Query: 68  DNDRPVRQDLNESTLDLSLNLNALDDGGEASSKADHIRDGKRKG 112
           DND PVRQDLNESTLDLSLNLNALDDGGE SSKADHIRDGKRKG
Sbjct: 176 DNDHPVRQDLNESTLDLSLNLNALDDGGETSSKADHIRDGKRKG 217

The following BLAST results are available for this feature:

BLAST of Csa1G195230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVV2_CUCSA	3.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G195230 PE=4 SV=1	[more]
A0A0B2RI94_GLYSO	3.4e-22	57.43	Uncharacterized protein OS=Glycine soja GN=glysoja_009966 PE=4 SV=1	[more]
C6T475_SOYBN	3.4e-22	57.43	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I1MFM6_SOYBN	3.4e-22	57.43	Uncharacterized protein OS=Glycine max GN=GLYMA_15G113900 PE=4 SV=1	[more]
A0A151T6P9_CAJCA	5.9e-22	56.44	Uncharacterized protein OS=Cajanus cajan GN=KK1_017241 PE=4 SV=1	[more]

BLAST of Csa1G195230 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G22320.1	9.6e-16	44.35	unknown protein	[more]

BLAST of Csa1G195230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209983\|gb\|KGN65079.1\|	4.4e-55	100.00	hypothetical protein Csa_1G195230 [Cucumis sativus]	[more]
gi\|449465421\|ref\|XP_004150426.1\|	3.3e-50	100.00	PREDICTED: uncharacterized protein LOC101221727 isoform X1 [Cucumis sativus]	[more]
gi\|778659850\|ref\|XP_011655175.1\|	1.2e-47	98.08	PREDICTED: uncharacterized protein LOC101221727 isoform X2 [Cucumis sativus]	[more]
gi\|659118143\|ref\|XP_008458968.1\|	9.9e-47	93.27	PREDICTED: uncharacterized protein LOC103498224 isoform X1 [Cucumis melo]	[more]
gi\|659118145\|ref\|XP_008458970.1\|	3.5e-44	91.35	PREDICTED: uncharacterized protein LOC103498224 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU091729	cucumber EST collection version 3.0	transcribed_cluster
CU094588	cucumber EST collection version 3.0	transcribed_cluster
CU149492	cucumber EST collection version 3.0	transcribed_cluster
CU164413	cucumber EST collection version 3.0	transcribed_cluster
CU177759	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G195230.1	Csa1G195230.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU094588	CU094588	transcribed_cluster
CU177759	CU177759	transcribed_cluster
CU091729	CU091729	transcribed_cluster
CU164413	CU164413	transcribed_cluster
CU149492	CU149492	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34572	FAMILY NOT NAMED	coord: 8..93 score: 3.9
None	No IPR available	PANTHER	PTHR34572:SF1	SUBFAMILY NOT NAMED	coord: 8..93 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G195230	Cla008981	Watermelon (97103) v1	cuwmB051
Csa1G195230	MELO3C021699	Melon (DHL92) v3.5.1	cumeB020
Csa1G195230	ClCG01G010010	Watermelon (Charleston Gray)	cuwcgB022
Csa1G195230	Lsi02G010910	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G195230	MELO3C021699.2	Melon (DHL92) v3.6.1	cumedB015
Csa1G195230	Cla97C01G010100	Watermelon (97103) v2	cuwmbB009
Csa1G195230	Bhi08G000674	Wax gourd	cuwgoB058
Csa1G195230	CSPI01G16170	Wild cucumber (PI 183967)	cpicuB000
Csa1G195230	CsGy1G015790	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G195230	Watermelon (97103) v2	cuwmbB005
Csa1G195230	Wax gourd	cuwgoB036
Csa1G195230	Cucumber (Gy14) v1	cgycuB016
Csa1G195230	Cucurbita maxima (Rimu)	cmacuB210
Csa1G195230	Cucurbita moschata (Rifu)	cmocuB196
Csa1G195230	Watermelon (Charleston Gray)	cuwcgB019
Csa1G195230	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G195230	Cucurbita pepo (Zucchini)	cpecuB521
Csa1G195230	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G195230	Cucumber (Gy14) v2	cgybcuB240
Csa1G195230	Silver-seed gourd	carcuB1051