Csa1G169920 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G169920
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Hydroxyproline-rich glycoprotein family protein; contains IPR004864 (Late embryogenesis abundant protein, LEA-14)
Location	Chr1 : 10520042 .. 10520800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAAACCCATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAATTCGTTAATTTCTCTGCCACCGCCGCCGCTCCCTCATGGGTCGTCGGATTTTCCATCAACAATCCTAACAAGAAGCTCGCCATCTCATTCCGAAACCTTGAGTCCTCAATTTACTACAAAGACAATATTATTGCTCAGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATAGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGAGAGGAATTTCGCGAGTCTTTTTGTTTTTGTGTACTATATATCTGTTCTTTTTTATTCAAGAACTTCTTTTAATTAATAATCTAAAGGTTCTTTAGTTGTTTTTGGTGAATTTTA

mRNA sequence

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAAACCCATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAATTCGTTAATTTCTCTGCCACCGCCGCCGCTCCCTCATGGGTCGTCGGATTTTCCATCAACAATCCTAACAAGAAGCTCGCCATCTCATTCCGAAACCTTGAGTCCTCAATTTACTACAAAGACAATATTATTGCTCAGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATAGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGA

Coding sequence (CDS)

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAAACCCATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAATTCGTTAATTTCTCTGCCACCGCCGCCGCTCCCTCATGGGTCGTCGGATTTTCCATCAACAATCCTAACAAGAAGCTCGCCATCTCATTCCGAAACCTTGAGTCCTCAATTTACTACAAAGACAATATTATTGCTCAGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATAGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGA

Protein sequence

MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLALRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH*

Homology

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BLAST of Csa1G169920 vs. TrEMBL
Match: A0A0A0LT76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169920 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 4.0e-120
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA
Sbjct: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60

Query: 61  LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL 120
           LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL
Sbjct: 61  LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL 120

Query: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI 180
           LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI
Sbjct: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI 180

Query: 181 RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH 215
           RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH
Sbjct: 181 RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH 214

[Close]

BLAST of Csa1G169920 vs. TrEMBL
Match: A0A0A0KEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425850 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 78/233 (33.48%), Postives = 117/233 (50.21%), Query Frame = 1


Query: 6   NGRWPPP---HPETQTHPHC---FNFSP----------------FIRGFAAGITLLLFIV 65
           NGR PPP   HP+ Q +P+    +++                  F+R   AGI ++  I 
Sbjct: 16  NGRPPPPPNSHPQAQAYPYAAPPYSYPTQYANPYDSTHHNARLSFLRALIAGIIVVFIIT 75

Query: 66  CIIYILQYLIFRPILLALRLDSLQFVNFSATAA--APSWVVGFSINNPNKKLAISFRNLE 125
            +I  + +L+ RP L   R+DS Q  NFS  A   + SW +GFS+ NPNKK+ +S+  ++
Sbjct: 76  AVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAKTLSASWFIGFSVFNPNKKMTVSYDFID 135

Query: 126 SSIYYKDNIIAQARTRRFLLPPRNSTTLVSPFIA-DLLVDESVLNDIHGDLERGTIDFTV 185
           S+++Y +  +   R   F    +  + + + F A    V+ S LN I+ D  RGTI F V
Sbjct: 136 STLFYNNEFLTDTRVPPFAQEKKTQSVVNASFSALSAYVEASSLNKINDDRRRGTIKFNV 195

Query: 186 VVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
            +        G WR     +RV+C DLSV FS     S  SG+L+G SR C +
Sbjct: 196 GISARVGFRAGWWRTRRRLLRVLCEDLSVSFS--SSNSSGSGKLIGESRACRV 246

[Close]

BLAST of Csa1G169920 vs. TrEMBL
Match: A0A061GV06_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_041284 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 66/206 (32.04%), Postives = 105/206 (50.97%), Query Frame = 1


Query: 9   WPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLALRLDSLQF 68
           +PPP P+            F R       +L+ I   I ++ +L+ RP L    L+SL  
Sbjct: 42  YPPPPPQNPR-------PTFFRRLFVAFAILVIIFGTILLIFWLVLRPHLPDFSLESLSL 101

Query: 69  VNFSAT--AAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFLLPPRN- 128
            NF+A+      +W   F + NPNKKL+IS+ ++ SS+++KD ++ + R   F+   RN 
Sbjct: 102 SNFNASNQRVTATWNAQFQVFNPNKKLSISYGDIVSSVFHKDYLLTETRIGPFVQGTRNV 161

Query: 129 STTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRVVCS 188
           ST   S  + D  V+  V++ I+G+  RG + F+V VL       G WR     +RV C+
Sbjct: 162 STVQASYSVVDSYVEAKVVDAINGERSRGEVKFSVRVLADVAFRYGGWRGRRRVLRVWCN 221

Query: 189 DLSVKFSWPPGLSGRSGQLVGGSRQC 212
           D++        LSG SG++ GG  +C
Sbjct: 222 DVA--------LSGSSGKMTGGPTKC 232

[Close]

BLAST of Csa1G169920 vs. TrEMBL
Match: M5W107_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011071mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.0e-18
Identity = 75/218 (34.40%), Postives = 108/218 (49.54%), Query Frame = 1


Query: 6   NGRWPPPHPETQTHP---HCFNFSP---FIRGFAAGITLLLFIVCIIYILQYLIFRPILL 65
           NG +P     TQT P   +   ++P   FIR F   +  L  IV  I ++ +LI RP + 
Sbjct: 20  NGGYPYSANPTQTQPRGPYSNAYNPRAAFIRRFVGAMIALFVIVGCILLVVWLILRPKVP 79

Query: 66  ALRLDSLQFVNFSATAAAPS----WVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQAR 125
             R+DSL   NF+ ++A+ S    W VGF + NPNKKL+I + ++ESSIYY    I+  R
Sbjct: 80  DFRVDSLSLSNFNVSSASQSVTGTWSVGFMVYNPNKKLSIRYDDVESSIYYGPGFISGTR 139

Query: 126 TRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRP 185
              F    ++ T++ + F        S  N       RG++ F V +L       G WR 
Sbjct: 140 VPPFAQGTKDRTSVNATF--------SAANSF--ARARGSMSFNVKLLARVEFRRGWWRL 199

Query: 186 IGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
               +RV+CS ++V  S   GLS     L GGSR C +
Sbjct: 200 RRRLLRVLCSGVAVSLSSKGGLS----SLAGGSRDCQV 223

[Close]

BLAST of Csa1G169920 vs. TrEMBL
Match: A0A169WB10_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010643 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 64/211 (30.33%), Postives = 108/211 (51.18%), Query Frame = 1


Query: 10  PPPHPETQTHPHCFNFSP----FIRGFAAGITLLLFIVCIIYILQYLIFRPILLALRLDS 69
           PP +    TH   +N       FIR   + I   + I   + ++ +L+ RP +   R+DS
Sbjct: 38  PPSNAAYYTHNPYYNQPDPQRAFIRRLFSIIIACIIISGTVLLIIWLVLRPRVPEFRVDS 97

Query: 70  LQFVNF--SATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFLLPP 129
           +   NF  S++  + +W V F++ NPNKK+ +++  +++ ++YK   +A      F    
Sbjct: 98  VTVSNFNISSSLVSGNWEVEFTVRNPNKKITVNYDRIDADVFYKSEGLASTTLPPFSQGK 157

Query: 130 RNSTTLVSPFIA-DLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRV 189
           RN T + + F A    VD+ V+ DI GD  RG++ F+V +L  A  + G W      +RV
Sbjct: 158 RNETKVKATFGAVGAYVDDWVVRDIGGDRGRGSVRFSVRLLARARFKAGAWGTRKRYVRV 217

Query: 190 VCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
           +C D+ V  +    LS   G +VG +RQC +
Sbjct: 218 LCRDVPVGLT----LSSGRGSMVGDARQCRV 244

[Close]

BLAST of Csa1G169920 vs. TAIR10
Match: AT3G52460.1 (AT3G52460.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-10
Identity = 45/197 (22.84%), Postives = 86/197 (43.65%), Query Frame = 1


Query: 26  SPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLALRLDSLQFVNFSATAA--APSWVVG 85
           S F+RG   G+ +L+ ++CI   + +L+ RP +    +++    NF+ T    +  W   
Sbjct: 103 SGFVRGIFTGLIVLVVLLCISTTITWLVLRPQIPLFSVNNFSVSNFNVTGPVFSAQWTAN 162

Query: 86  FSINNPNKKLAISFRNLESSIYY-----KDNIIAQARTRRFLLPPRNST----TLVSPFI 145
            +I N N KL   F  ++  +Y+     +D  +A A  +   +  + S     TL +   
Sbjct: 163 LTIENQNTKLKGYFDRIQGLVYHQNAVGEDEFLATAFFQPVFVETKKSVVIGETLTAGDK 222

Query: 146 ADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWP 205
               V   V++++  + E GT+ F++ +  +   +   W    + ++V C  L V F   
Sbjct: 223 EQPKVPSWVVDEMKKERETGTVTFSLRMAVWVTFKTDGWAARESGLKVFCGKLKVGFE-- 282

Query: 206 PGLSGRSGQLVGGSRQC 212
            G+SG    L+     C
Sbjct: 283 -GISGNGAVLLPKPLPC 296

[Close]

BLAST of Csa1G169920 vs. NCBI nr
Match: gi|778665002|ref|XP_011648461.1| (PREDICTED: uncharacterized protein LOC105434472 [Cucumis sativus])

HSP 1 Score: 438.7 bits (1127), Expect = 5.8e-120
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1


Query: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA
Sbjct: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60

Query: 61  LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL 120
           LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL
Sbjct: 61  LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL 120

Query: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI 180
           LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI
Sbjct: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI 180

Query: 181 RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH 215
           RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH
Sbjct: 181 RVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH 214

[Close]

BLAST of Csa1G169920 vs. NCBI nr
Match: gi|659127364|ref|XP_008463664.1| (PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 8.1e-90
Identity = 168/214 (78.50%), Postives = 187/214 (87.38%), Query Frame = 1


Query: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MAN+TN RWPPPHPE+Q+H HCFN SPF+RGFAAG+ LLLFI  +IY LQ+L F PIL A
Sbjct: 1   MANTTNSRWPPPHPESQSHLHCFNSSPFLRGFAAGMALLLFIAFVIYSLQWLFFHPILPA 60

Query: 61  LRLDSLQFVNFS-ATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRF 120
           LRLDSLQ  NFS A AAAPSW+VGFSINNPNKKLAISF+NL+SSIYYKDNIIAQAR RRF
Sbjct: 61  LRLDSLQLANFSSAAAAAPSWIVGFSINNPNKKLAISFQNLDSSIYYKDNIIAQARIRRF 120

Query: 121 LLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTD 180
           LL PRNSTTLV PFIA  LVDESVLNDI+GDL RGTI+FTVVVLGYAN +I +W+  GT+
Sbjct: 121 LLRPRNSTTLVIPFIAVSLVDESVLNDINGDLARGTINFTVVVLGYANFQISLWQWRGTN 180

Query: 181 IRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
           I+VVCSDLSV FSWPP L+GRSGQLVGGS+QC L
Sbjct: 181 IQVVCSDLSVGFSWPPSLAGRSGQLVGGSKQCQL 214

[Close]

BLAST of Csa1G169920 vs. NCBI nr
Match: gi|1009113261|ref|XP_015872567.1| (PREDICTED: uncharacterized protein At1g08160-like [Ziziphus jujuba])

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 82/220 (37.27%), Postives = 118/220 (53.64%), Query Frame = 1


Query: 10  PPPHPETQTHPHCFNFSP---------FIRGFAAGITLLLFIVC--IIYILQYLIFRPIL 69
           PPPH +   HP+  ++ P         F+R F   I +  FI+C  I++I+ +L+ RP +
Sbjct: 34  PPPHHQPPYHPNYPSYDPSTAAAARATFLRRFFTAI-IAFFIICGSIVFII-WLVLRPRV 93

Query: 70  LALRLDSLQFVNFSATAAAPS----WVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQA 129
              R+DSL   NF+A+ A+ S    WVVG S+ NPNKKL++++  + SSI+YKD  +AQ 
Sbjct: 94  PQFRVDSLSLSNFNASTASQSISGNWVVGLSVYNPNKKLSLAYDGVVSSIFYKDEFLAQT 153

Query: 130 RTRRFLLPPRNSTTLVSPFIA-DLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVW 189
           R        RN T + + F A +  V +  L+ I  D  RGT+ F V +LG      G W
Sbjct: 154 RIPPLKQGKRNRTAVSASFSATNSFVGDRSLSSISRDNARGTVSFDVRILGRVVFRTGGW 213

Query: 190 RPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
                  RV+C DL+V  S   G    SG+LVGG R C +
Sbjct: 214 TMRRRIFRVLCEDLAVAISNSGGGGRSSGKLVGGGRDCRV 251

[Close]

BLAST of Csa1G169920 vs. NCBI nr
Match: gi|778716744|ref|XP_004140265.2| (PREDICTED: uncharacterized protein At1g08160 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 6.3e-26
Identity = 78/233 (33.48%), Postives = 117/233 (50.21%), Query Frame = 1


Query: 6   NGRWPPP---HPETQTHPHC---FNFSP----------------FIRGFAAGITLLLFIV 65
           NGR PPP   HP+ Q +P+    +++                  F+R   AGI ++  I 
Sbjct: 16  NGRPPPPPNSHPQAQAYPYAAPPYSYPTQYANPYDSTHHNARLSFLRALIAGIIVVFIIT 75

Query: 66  CIIYILQYLIFRPILLALRLDSLQFVNFSATAA--APSWVVGFSINNPNKKLAISFRNLE 125
            +I  + +L+ RP L   R+DS Q  NFS  A   + SW +GFS+ NPNKK+ +S+  ++
Sbjct: 76  AVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAKTLSASWFIGFSVFNPNKKMTVSYDFID 135

Query: 126 SSIYYKDNIIAQARTRRFLLPPRNSTTLVSPFIA-DLLVDESVLNDIHGDLERGTIDFTV 185
           S+++Y +  +   R   F    +  + + + F A    V+ S LN I+ D  RGTI F V
Sbjct: 136 STLFYNNEFLTDTRVPPFAQEKKTQSVVNASFSALSAYVEASSLNKINDDRRRGTIKFNV 195

Query: 186 VVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
            +        G WR     +RV+C DLSV FS     S  SG+L+G SR C +
Sbjct: 196 GISARVGFRAGWWRTRRRLLRVLCEDLSVSFS--SSNSSGSGKLIGESRACRV 246

[Close]

BLAST of Csa1G169920 vs. NCBI nr
Match: gi|659097378|ref|XP_008449592.1| (PREDICTED: uncharacterized protein At1g08160 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.1e-25
Identity = 80/234 (34.19%), Postives = 119/234 (50.85%), Query Frame = 1


Query: 6   NGRWPPP---HPETQTHPHC---FNFSP----------------FIRGFAAGITLLLFIV 65
           NGR PPP   HP+ Q +P+    +++                  F+R   AGI ++  I 
Sbjct: 16  NGRPPPPSNSHPQGQAYPYAAPPYSYPTQYANPYDSTHHNARLSFLRALIAGIIVVFIIT 75

Query: 66  CIIYILQYLIFRPILLALRLDSLQFVNFSATAAA--PSWVVGFSINNPNKKLAISFRNLE 125
            +I  + +L+ RP L   R+DS Q  NFS  A +   SW +GFS+ NPNKK+ +S+  ++
Sbjct: 76  AVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAQSLSASWFIGFSVFNPNKKMTVSYDFVD 135

Query: 126 SSIYYKDNIIAQARTRRFLLPPRNSTTLVSPFIADL--LVDESVLNDIHGDLERGTIDFT 185
           S+++Y +  + + R   F    R  +  V+  ++ L   V+ S LN I+ D  RGTI F 
Sbjct: 136 STLFYNNEFLTETRVPPFTQDKRTQS-FVNASLSSLNAYVEASSLNKINDDRRRGTIKFN 195

Query: 186 VVVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 214
           V V        G WR     +RV+C DLSV FS     S  SG+L+G SR C +
Sbjct: 196 VGVSARVGFRAGWWRTRRRLLRVLCEDLSVSFS--SSNSSGSGKLIGESRACRV 246

The following BLAST results are available for this feature:

BLAST of Csa1G169920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT76_CUCSA	4.0e-120	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169920 PE=4 SV=1	[more]
A0A0A0KEW5_CUCSA	4.4e-26	33.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425850 PE=4 SV=1	[more]
A0A061GV06_THECC	1.8e-19	32.04	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS...	[more]
M5W107_PRUPE	2.0e-18	34.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011071mg PE=4 SV=1	[more]
A0A169WB10_DAUCA	2.6e-18	30.33	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010643 PE=4 SV=1	[more]

BLAST of Csa1G169920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52460.1	5.2e-10	22.84	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Csa1G169920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665002\|ref\|XP_011648461.1\|	5.8e-120	100.00	PREDICTED: uncharacterized protein LOC105434472 [Cucumis sativus]	[more]
gi\|659127364\|ref\|XP_008463664.1\|	8.1e-90	78.50	PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo]	[more]
gi\|1009113261\|ref\|XP_015872567.1\|	1.3e-26	37.27	PREDICTED: uncharacterized protein At1g08160-like [Ziziphus jujuba]	[more]
gi\|778716744\|ref\|XP_004140265.2\|	6.3e-26	33.48	PREDICTED: uncharacterized protein At1g08160 [Cucumis sativus]	[more]
gi\|659097378\|ref\|XP_008449592.1\|	3.1e-25	34.19	PREDICTED: uncharacterized protein At1g08160 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G169920.1	Csa1G169920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 85..165 score: 2.
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 10..211 score: 3.1
None	No IPR available	PANTHER	PTHR31852:SF2	SUBFAMILY NOT NAMED	coord: 10..211 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G169920	Cla008621	Watermelon (97103) v1	cuwmB065
Csa1G169920	Cla017635	Watermelon (97103) v1	cuwmB007
Csa1G169920	MELO3C025576	Melon (DHL92) v3.5.1	cumeB015
Csa1G169920	MELO3C009533	Melon (DHL92) v3.5.1	cumeB068
Csa1G169920	ClCG01G011580	Watermelon (Charleston Gray)	cuwcgB022
Csa1G169920	ClCG10G018400	Watermelon (Charleston Gray)	cuwcgB006
Csa1G169920	ClCG02G022410	Watermelon (Charleston Gray)	cuwcgB028
Csa1G169920	Lsi03G018280	Bottle gourd (USVL1VR-Ls)	culsiB049
Csa1G169920	Lsi10G011390	Bottle gourd (USVL1VR-Ls)	culsiB005
Csa1G169920	Lsi02G011910	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G169920	MELO3C009533.2	Melon (DHL92) v3.6.1	cumedB061
Csa1G169920	MELO3C025576.2	Melon (DHL92) v3.6.1	cumedB010
Csa1G169920	Cla97C02G048490	Watermelon (97103) v2	cuwmbB026
Csa1G169920	Cla97C10G201380	Watermelon (97103) v2	cuwmbB018
Csa1G169920	CSPI03G35560	Wild cucumber (PI 183967)	cpicuB104
Csa1G169920	CSPI01G15090	Wild cucumber (PI 183967)	cpicuB000
Csa1G169920	Cucsa.241760	Cucumber (Gy14) v1	cgycuB342
Csa1G169920	Cucsa.319600	Cucumber (Gy14) v1	cgycuB457
Csa1G169920	CmaCh02G013070	Cucurbita maxima (Rimu)	cmacuB579
Csa1G169920	CmoCh02G013480	Cucurbita moschata (Rifu)	cmocuB569
Csa1G169920	Cp4.1LG08g09730	Cucurbita pepo (Zucchini)	cpecuB848
Csa1G169920	CsGy1G014870	Cucumber (Gy14) v2	cgybcuB001
Csa1G169920	Carg02654	Silver-seed gourd	carcuB0931

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa1G169920	Csa3G780530	Cucumber (Chinese Long) v2	cucuB016

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G169920	Watermelon (97103) v1	cuwmB042
Csa1G169920	Cucurbita pepo (Zucchini)	cpecuB003
Csa1G169920	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G169920	Bottle gourd (USVL1VR-Ls)	culsiB021
Csa1G169920	Silver-seed gourd	carcuB0000
Csa1G169920	Watermelon (97103) v2	cuwmbB009
Csa1G169920	Wax gourd	cuwgoB067
Csa1G169920	Cucurbita maxima (Rimu)	cmacuB222
Csa1G169920	Cucurbita maxima (Rimu)	cmacuB399
Csa1G169920	Cucurbita moschata (Rifu)	cmocuB206