ClCG01G011580 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G011580
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family LENGTH=226
LocationCG_Chr01 : 19239656 .. 19245630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAAAATCGACTTCCAAATTCTATGTTTCTCTTGGGGGTAACCTCAATACGTAGGGATTGAAGAAGCAGTCCATTATTTCTAGATCAAGCATAGAAGTTGAATATCGTTTTCTTGCTTTGGTTGCAACTGAAATGGTAAGGATTTGTGTAAGCCCCGCATCTATTTTTATGAGAACGCAAAGTAAGAAGGGGCCGAGAGATGGGTGAATGTGTAAAAGTAGTTGGCTGGCTTGCGTTTGGAGTGGGAAAATGGCTAAGTGTAAGCTATGCGTTGATGACAACCTGTTGTGGAGGAAATAATTTTGGTGTAAACGCAAAGGTGAGGGAAGCTTATCATGCGTTGAAGTCGTGATGTGTTGAGGATAATAAGGCGTGGAGGATCACTTGGTACCGAGGATCATTATGCGTTAAACGCATTGAAGGCAGTGTGTCGGTGGAAGTAAAGGCCACGAGGGGTTTGGGAGCTGTTATGCGGTGAGTCCATTATGCGGTGAATGCTACCATGCGTCGAAGGCGAGTGTGTGTTGGACAAGGAGTGTTGGCTGAGAGAAGGTAATGCGTATGTTAATTATTTGGCGGGAGAGTTTGAAATGAATTATCATCAGAGGCCGTGTGCGTTGCTGAAGCTGAGCATAGGAGTATGCGTCGAACGGATTATAATATAGAGTTGGAATGGGGAACAAGTCGGTGATATATATATATATATATATGTGGACTGAGAATTCAATTGTTCTGCTTGCATTTCAGAGCTCGAGTTGGGTCCATATTAAGGCGAAACTCCGAAGAGAGGTAGAAGAAGATGTTCATGCTGATCTGAAGCAGAAATTTCATTGAATTCGTGGAAGAAACTCGGGTTTGACAGAGGTTTCGGCTGCTATGATCTCTTCAGAGTGATGCTCGGTTTTGGAGGAAGAACAAATTGAAGAGACGAAGGTTAGGGCTGAAACTTTGAGGTTAGTAAGTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTGAGCATAGGAGGTATGCGTCGAACGGATTATAATATAGAGTTGGAATGGGGAACAAGTCGGTGATATATATATATATATATATGTGGACTGAGAATTCAATTGTTCTGCTTGCATTTCAGAGCTCGAGTTGGGTCCATATTAAGGCGAAACTCCGAAGAGAGGTAGAAGAAGATGTTCATGCTGATCTGAAGCAGAAATTTCATTGAATTCGTGGAAGAAACTCGGGTTTGACAGAGGTTTCGGCTGCTATGATCTCTTCAGAGTGATGCTCGGTTTTGGAGGAAGAACAAATTGAAGAGACGAAGGTTAGGGCTGAAACTTTGAGGTTAGTAAGTTAACTCGAATTCTAGCAGAATTCATGAAGGATGTTTGAGCTGAAATTGTCTAATTGTGTGTCAAACTCAGGAAGAAGAGACGGAAGTTGAACTGTCGGATGATTAGAGGCAACTTGGAGTTGTCGAAGGTTATGTCCTAAACGGTGAGGAGGTTCTTCATGAAATTTGGAGGTGAGATGTAGGACCTGTATTTTAACAAGTTTATAGAAGGAAGAAAGTACTGGAATTTGTTGAAACGAAATGTTTAACATGTTGAAAAAGGAAGAAGAAAGGAAGAAGGAAACGGTTCTGTCACAGCTTGAGTATCGCTGAGTGATGAGAGATTGAGCAGCAGAGGAAGTAACGCTGCGACGCAAAGATAGGCTTGCGTCTCACAATTCTCGCTAGAGTATCGCTGGGTACCGCTCCTCAAGGTAGTTTCGCTGGTTTTAAACAACGCAGTGTCGCTAGTACAGTTTGAATATCTTTTGAGTAACGCTGGTAGCTTATTAATTCCCATAGAGTAACGATGCTACTGTATGTTAAAGAAAAGGGGAGTTTATGAAAACTAAACTTGAGGATTGTGTATTTTCAGGCCAAGAAGAGCTCGGGGAGGCTTATAACCCATTTAGAGCCGGGACCGATTGTGAGTGACTGTTTGTTATATCTTGTGTTAAACTTAGTACGCATAGTGATGAGGAAACGTAATGCATGGTAGTTTGCTTTATGTATGTGATGTGTTAGTGATTTAAAAGAATACTATTACAAATGTCTAAGCATATAAGTGGCTGAGGGACCTTATGGTGAAAGCTACTTGTGAGTAAGCGTGATATTAAGTGCCGAGGGATTTGAGAAGGCACTTGAATAACAGTAGAGAATGGACTACAATGCTCAGGGACTGTAAGTGAAGGCATGTAGTATCCTATCACAACTAGCTCGTGCCGAGGGATTCTGTGTGAAGGCACTTGAGCGTAGATAGAGTTTGTTACCTGTGCTGAGGAATTTCATGTGAAGGCACATGGTGTTGTAGTTAAACATGAACAAGTGCTGAGGGACGGGAAGTGAAGGCACTAAATAGATAGGAAACTTGTGAAACATGAGAATTGATAGATATACATGCGATGGTTACTACCTTACAAACTGAATTAAACTAATATGATTTGTCTTAGTAGATTTAGTCACTCACTGAGCCTTTTGCTCATCCAGTTTGTTGTTGTTTGCCGTTTCAGGTAGCGAGCGTGTCCGGGACGCCTAGCCTACTGAAGAATCTCGTCTGGGCCTGTCTAGAAGCGAACCTCTGGGATAGTTGTAAATACTTAGCTTGTTCGTATATCTTGTAATGAACATATTTTATGAGGGTAGAGAGGGGGACGTGTTGTACTTATTATGTGAATATACAAACATGTTGATTGAAGTTTGCACGTTTTTCTATGATGAGATTATGAAAAGTTGATTGTCTTGCTATTCTTTTATGGTGTTTATCTTATAGAGTCTTATGTTGGGAAATAGGATCATGCTCTTTCCTAGGTATAGAGTAAATCTGGGTTGGGGTGTGACAATTTGTTCTTTACTTAATGATCTAAGAATCTCTTTTGCTAATATTCCTGTTTTATGGTGTAATAATCTCAGTGTTGTTCATCGTAGTGCTAATCCTATCTTATATTCCAAAACTAAGTATGTTGAGCTTGACATTTATTATGTTCGAGATCTTGTGTTTAAGAAGCATGTCAATATTCGTCATCTCCCTACCTCAGAACAAATTGCTAATGTGTTTATAAAACCTCTATCCACTTCAAGTTTTTTGAAGCTAAAGAGTAAATTGAATGTTGTTGTAGCAGCCAATATAGGTTTGCCCGGGGGGGATTGAATTTATTATCATTGTAAAGGCCCAAGGCCTAGTTTCCTCTTCTAGGAGGCCTTCAATTCGGTTACTATCGCGATGTAATCCAGTATGTGTGAGTATAGTGAGCTGTTTTGTAAGAGTTTCTTTTCAAGCTTTGTTATTTATATGACATTTCATCTTCCATTAATAAATAACAAAACATAGTGTTTTCTCTCGCATGGCTATGGCTCCAAATTATCTCATAATTATTTTTTTAAAAAAATTATTTTAAGTTTGGTAATTGTGAAAAGTAGAGAAAGATAAAATTAAATGATAAATGTAAAAAGTAAATATAGAGGGAAATAAGTGAAAAAAAAATGGAAAAAAAAATTACCACAAAAATGTGCAAAATTTAACGATAACTACCACCACTTTTGCAATTTGCTCTATTTACTACCAAATAAAAAGTAAAAATTAGAATTAGAAACATAAAAAACCAATCTTAGATTAAGCTGGTCATTCTCATAGTTGTGTGTGTTCCCCTCACAGATATCTCGTGCCATGGCTAACTCCTCCATCGGCGGCTGGCCGACGCATCCTCAACCCCAAACCCATCCCCATCGCCACAACTCCTCGCCGTGCCTCCGAGCCTTCGCCGCCGGCATGGTTCTCCTCCTTTCCATCGCTCTCATCATCTACACCGTCCAATATTTCATCTTCCGCCCCATCCTCCCTATTCTCCGGGTCGACACACTTCAACTCGCCAAATTTCTCTGCCGCCGCCCCGTCCCTTATCTCCTCATGGGTCGTTGGATTTTCCGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCACCGAAGGAACTCGACGGCCGTTGTCACTCCCTTCATCACCGACTCGCCCGTCGATGAGTCGGTTTTGAACGACATTAAAGGAGACTTAGCGTGTGGAGCAATTAATTTCAATGTTGTAGTTCTTGGCTATGCCGAGTTCCAAATCGGTGTGTGGCGGTGGAGGGGCAACAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTGTTGTCGCCGCTGAGTCCCGGCGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA

mRNA sequence

ATGATCGAAAATCGACTTCCAAATTCTATATATCTCGTGCCATGGCTAACTCCTCCATCGGCGGCTGGCCGACGCATCCTCAACCCCAAACCCATCCCCATCGCCACAACTCCTCGCCGTGCCTCCGAGCCTTCGCCGCCGGCATGGTTCTCCTCCTTTCCATCGCTCTCATCATCTACACCGTCCAATATTTCATCTTCCGCCCCATCCTCCCTATTCTCCGGGTCGACACACTTCAACTCGCCAAATTTCTCTGCCGCCGCCCCGTCCCTTATCTCCTCATGGGTCGTTGGATTTTCCGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCACCGAAGGAACTCGACGGCCGTTGTCACTCCCTTCATCACCGACTCGCCCGTCGATGAGTCGGTTTTGAACGACATTAAAGGAGACTTAGCGTGTGGAGCAATTAATTTCAATGTTGTAGTTCTTGGCTATGCCGAGTTCCAAATCGGTGTGTGGCGGTGGAGGGGCAACAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTGTTGTCGCCGCTGAGTCCCGGCGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA

Coding sequence (CDS)

ATGATCGAAAATCGACTTCCAAATTCTATATATCTCGTGCCATGGCTAACTCCTCCATCGGCGGCTGGCCGACGCATCCTCAACCCCAAACCCATCCCCATCGCCACAACTCCTCGCCGTGCCTCCGAGCCTTCGCCGCCGGCATGGTTCTCCTCCTTTCCATCGCTCTCATCATCTACACCGTCCAATATTTCATCTTCCGCCCCATCCTCCCTATTCTCCGGGTCGACACACTTCAACTCGCCAAATTTCTCTGCCGCCGCCCCGTCCCTTATCTCCTCATGGGTCGTTGGATTTTCCGTCAACAACCCCAACAAGAAGCTCGCCATCTCATTCCAAAACCTTGAGTCCTCCATTTACTACAAAGATAACATTATCGCTCAAGCCCGAATTCACCGCTTCCTCCTCCACCGAAGGAACTCGACGGCCGTTGTCACTCCCTTCATCACCGACTCGCCCGTCGATGAGTCGGTTTTGAACGACATTAAAGGAGACTTAGCGTGTGGAGCAATTAATTTCAATGTTGTAGTTCTTGGCTATGCCGAGTTCCAAATCGGTGTGTGGCGGTGGAGGGGCAACAATTTTCGGGTTCTTTGCAGCGATTTGTCTGTCGGATTGTTGTCGCCGCTGAGTCCCGGCGGCGGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCAGCTACGATGA

Protein sequence

MIENRLPNSIYLVPWLTPPSAAGRRILNPKPIPIATTPRRASEPSPPAWFSSFPSLSSSTPSNISSSAPSSLFSGSTHFNSPNFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNSTAVVTPFITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSDLSVGLLSPLSPGGGSGQLVGGSRQCQLR
Homology
[Close]
BLAST of ClCG01G011580 vs. TrEMBL
Match: A0A0A0LT76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169920 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.3e-46
Identity = 103/146 (70.55%), Postives = 112/146 (76.71%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           NFSA A +   SWVVGFS+NNPNKKLAISF+NLESSIYYKDNIIAQAR  RFLL  RNST
Sbjct: 70  NFSATAAA--PSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFLLPPRNST 129

Query: 143 AVVTPFITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSDL 202
            +V+PFI D  VDESVLNDI GDL  G I+F VVVLGYA  +IGVWR  G + RV+CSDL
Sbjct: 130 TLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRVVCSDL 189

Query: 203 SVGLLSPLSPGGGSGQLVGGSRQCQL 229
           SV    P    G SGQLVGGSRQC L
Sbjct: 190 SVKFSWPPGLSGRSGQLVGGSRQCHL 213

[Close]
BLAST of ClCG01G011580 vs. TrEMBL
Match: A0A0A0KEW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425850 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.3e-20
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1 

Query: 79  FNSPNFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHR 138
           F   NFS AA +L +SW +GFSV NPNKK+ +S+  ++S+++Y +  +   R+  F   +
Sbjct: 98  FQVTNFSTAAKTLSASWFIGFSVFNPNKKMTVSYDFIDSTLFYNNEFLTDTRVPPFAQEK 157

Query: 139 RNSTAVVTPFITDSP-VDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRV 198
           +  + V   F   S  V+ S LN I  D   G I FNV +     F+ G WR R    RV
Sbjct: 158 KTQSVVNASFSALSAYVEASSLNKINDDRRRGTIKFNVGISARVGFRAGWWRTRRRLLRV 217

Query: 199 LCSDLSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           LC DLSV   S  S   GSG+L+G SR C++
Sbjct: 218 LCEDLSVSFSS--SNSSGSGKLIGESRACRV 246

[Close]
BLAST of ClCG01G011580 vs. TrEMBL
Match: A0A067K175_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19149 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 56/147 (38.10%), Postives = 85/147 (57.82%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           N S ++  L ++W   F V NPNKK+ IS+  + SS+ YK  I+AQ RI  F    +N T
Sbjct: 99  NVSTSSQRLSANWNARFQVYNPNKKMKISYDAIMSSVLYKTEILAQTRIPPFKQDTKNQT 158

Query: 143 AVVTPF-ITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSD 202
            +   F   +S VD  V+NDI G+ + GA+ FN+ ++    F++G +R R    RV C +
Sbjct: 159 TIDAAFAAVESYVDGWVVNDINGEKSHGAVEFNLRLVADVGFKVGGFRARRRLLRVWCDN 218

Query: 203 LSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           + +G     S  GGSG L GG+R+C++
Sbjct: 219 VPIG----FSVNGGSGNLTGGARECKV 241

[Close]
BLAST of ClCG01G011580 vs. TrEMBL
Match: A0A059AAZ5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00543 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.0e-18
Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 1 

Query: 83  NFSA--AAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRN 142
           NFS   A+  +   WVV F V NPNKK+ IS+ ++E+ + YK   +++ R+  F    RN
Sbjct: 99  NFSVSNASQHVSGDWVVRFQVANPNKKMKISYTDIEAYLSYKTESLSETRLQPFDQGTRN 158

Query: 143 STAVVTPFIT-DSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLC 202
            T V   F   DS VD   ++ I  D A GA++F V ++  A F+ G WR R    +V+C
Sbjct: 159 QTVVQASFAAADSYVDNWAVSGINADRASGAVSFQVRLIALARFKAGWWRARRRVIKVVC 218

Query: 203 SDLSVGLLSPLSPGGGSGQLVGGSRQCQL 229
            +L+VG    LS   G+G+L GG R C +
Sbjct: 219 GNLAVG----LSSNNGTGKLTGGVRDCSV 243

[Close]
BLAST of ClCG01G011580 vs. TrEMBL
Match: A0A169WB10_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010643 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 51/147 (34.69%), Postives = 83/147 (56.46%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           NF+ ++  +  +W V F+V NPNKK+ +++  +++ ++YK   +A   +  F   +RN T
Sbjct: 102 NFNISSSLVSGNWEVEFTVRNPNKKITVNYDRIDADVFYKSEGLASTTLPPFSQGKRNET 161

Query: 143 AVVTPF-ITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSD 202
            V   F    + VD+ V+ DI GD   G++ F+V +L  A F+ G W  R    RVLC D
Sbjct: 162 KVKATFGAVGAYVDDWVVRDIGGDRGRGSVRFSVRLLARARFKAGAWGTRKRYVRVLCRD 221

Query: 203 LSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           + VG    L+   G G +VG +RQC++
Sbjct: 222 VPVG----LTLSSGRGSMVGDARQCRV 244

[Close]
BLAST of ClCG01G011580 vs. TAIR10
Match: AT4G01410.1 (AT4G01410.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 38/116 (32.76%), Postives = 52/116 (44.83%), Query Frame = 1 

Query: 88  APSLISSWVVGFSV--NNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNSTAVV 147
           AP LIS+  V FSV   NPN++++I +  L   + YKD II        L     ST V+
Sbjct: 87  APPLIST-SVQFSVLARNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVI 146

Query: 148 TPFITDS--PVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLC 200
            P +  +  PV   V N +K D A G +   VV+ G   ++ G  +     F   C
Sbjct: 147 APVMGGNGIPVSPEVANGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARC 201

[Close]
BLAST of ClCG01G011580 vs. NCBI nr
Match: gi|659127364|ref|XP_008463664.1| (PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 108/147 (73.47%), Postives = 120/147 (81.63%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           NFS+AA +   SW+VGFS+NNPNKKLAISFQNL+SSIYYKDNIIAQARI RFLL  RNST
Sbjct: 70  NFSSAAAAA-PSWIVGFSINNPNKKLAISFQNLDSSIYYKDNIIAQARIRRFLLRPRNST 129

Query: 143 AVVTPFITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSDL 202
            +V PFI  S VDESVLNDI GDLA G INF VVVLGYA FQI +W+WRG N +V+CSDL
Sbjct: 130 TLVIPFIAVSLVDESVLNDINGDLARGTINFTVVVLGYANFQISLWQWRGTNIQVVCSDL 189

Query: 203 SVGLLSPLSPGGGSGQLVGGSRQCQLR 230
           SVG   P S  G SGQLVGGS+QCQL+
Sbjct: 190 SVGFSWPPSLAGRSGQLVGGSKQCQLQ 215

[Close]
BLAST of ClCG01G011580 vs. NCBI nr
Match: gi|778665002|ref|XP_011648461.1| (PREDICTED: uncharacterized protein LOC105434472 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 103/146 (70.55%), Postives = 112/146 (76.71%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           NFSA A +   SWVVGFS+NNPNKKLAISF+NLESSIYYKDNIIAQAR  RFLL  RNST
Sbjct: 70  NFSATAAA--PSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFLLPPRNST 129

Query: 143 AVVTPFITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSDL 202
            +V+PFI D  VDESVLNDI GDL  G I+F VVVLGYA  +IGVWR  G + RV+CSDL
Sbjct: 130 TLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDIRVVCSDL 189

Query: 203 SVGLLSPLSPGGGSGQLVGGSRQCQL 229
           SV    P    G SGQLVGGSRQC L
Sbjct: 190 SVKFSWPPGLSGRSGQLVGGSRQCHL 213

[Close]
BLAST of ClCG01G011580 vs. NCBI nr
Match: gi|1009113261|ref|XP_015872567.1| (PREDICTED: uncharacterized protein At1g08160-like [Ziziphus jujuba])

HSP 1 Score: 119.0 bits (297), Expect = 1.1e-23
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           N S A+ S+  +WVVG SV NPNKKL++++  + SSI+YKD  +AQ RI      +RN T
Sbjct: 105 NASTASQSISGNWVVGLSVYNPNKKLSLAYDGVVSSIFYKDEFLAQTRIPPLKQGKRNRT 164

Query: 143 AVVTPF-ITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSD 202
           AV   F  T+S V +  L+ I  D A G ++F+V +LG   F+ G W  R   FRVLC D
Sbjct: 165 AVSASFSATNSFVGDRSLSSISRDNARGTVSFDVRILGRVVFRTGGWTMRRRIFRVLCED 224

Query: 203 LSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           L+V + +    G  SG+LVGG R C++
Sbjct: 225 LAVAISNSGGGGRSSGKLVGGGRDCRV 251

[Close]
BLAST of ClCG01G011580 vs. NCBI nr
Match: gi|694391977|ref|XP_009371484.1| (PREDICTED: uncharacterized protein At1g08160-like [Pyrus x bretschneideri])

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 60/147 (40.82%), Postives = 88/147 (59.86%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           N S+++ SL  +W VGFSV NPNKKL+I ++ + SSI+Y++  I++ R+  F    ++  
Sbjct: 92  NVSSSSQSLSGTWSVGFSVYNPNKKLSIRYEEVVSSIFYRNGFISETRVQPFAQGTKDRN 151

Query: 143 AVVTPF-ITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSD 202
            V   F   +S VD  V+  I+ D   G ++FNV VL   +F+ G WR R    RVLC D
Sbjct: 152 FVNATFSAANSFVDAPVVRGIEVDRGRGTVSFNVKVLARVQFRNGGWRLRRRLVRVLCRD 211

Query: 203 LSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           ++V     +S   GSG+L GGSR CQ+
Sbjct: 212 VAVS----VSSNSGSGKLAGGSRDCQV 234

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BLAST of ClCG01G011580 vs. NCBI nr
Match: gi|694399318|ref|XP_009374790.1| (PREDICTED: uncharacterized protein At1g08160-like [Pyrus x bretschneideri])

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-19
Identity = 59/147 (40.14%), Postives = 87/147 (59.18%), Query Frame = 1 

Query: 83  NFSAAAPSLISSWVVGFSVNNPNKKLAISFQNLESSIYYKDNIIAQARIHRFLLHRRNST 142
           N S+++ SL  +W VGFSV NPNKKL+I ++ + SSI+Y++  I++ R+  F    ++  
Sbjct: 92  NVSSSSQSLSGTWSVGFSVYNPNKKLSIRYEEVVSSIFYRNGFISETRVQPFAQGTKDRN 151

Query: 143 AVVTPF-ITDSPVDESVLNDIKGDLACGAINFNVVVLGYAEFQIGVWRWRGNNFRVLCSD 202
            V   F   +S VD  V+  I+ D   G ++FNV VL   +F+ G WR R    RVLC D
Sbjct: 152 FVNATFSAANSFVDAPVVRGIEVDRGRGTVSFNVKVLARVQFRNGGWRLRRRLLRVLCRD 211

Query: 203 LSVGLLSPLSPGGGSGQLVGGSRQCQL 229
           ++V     +S    SG+L GGSR CQ+
Sbjct: 212 VAVS----VSSNSRSGKLAGGSRDCQV 234

The following BLAST results are available for this feature:
BLAST of ClCG01G011580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT76_CUCSA5.3e-4670.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169920 PE=4 SV=1[more]
A0A0A0KEW5_CUCSA1.3e-2039.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425850 PE=4 SV=1[more]
A0A067K175_JATCU1.6e-1838.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19149 PE=4 SV=1[more]
A0A059AAZ5_EUCGR8.0e-1838.26Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00543 PE=4 SV=1[more]
A0A169WB10_DAUCA1.8e-1734.69Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_010643 PE=4 SV=1[more]
BLAST of ClCG01G011580 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G01410.11.7e-0632.76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
BLAST of ClCG01G011580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127364|ref|XP_008463664.1|1.2e-5173.47PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo][more]
gi|778665002|ref|XP_011648461.1|7.7e-4670.55PREDICTED: uncharacterized protein LOC105434472 [Cucumis sativus][more]
gi|1009113261|ref|XP_015872567.1|1.1e-2344.22PREDICTED: uncharacterized protein At1g08160-like [Ziziphus jujuba][more]
gi|694391977|ref|XP_009371484.1|2.5e-2040.82PREDICTED: uncharacterized protein At1g08160-like [Pyrus x bretschneideri][more]
gi|694399318|ref|XP_009374790.1|1.6e-1940.14PREDICTED: uncharacterized protein At1g08160-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G011580.1ClCG01G011580.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 100..187
score: 2.
NoneNo IPR availablePANTHERPTHR31852FAMILY NOT NAMEDcoord: 55..227
score: 5.7
NoneNo IPR availablePANTHERPTHR31852:SF2SUBFAMILY NOT NAMEDcoord: 55..227
score: 5.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G011580Csa1G169920Cucumber (Chinese Long) v2cuwcgB022
ClCG01G011580MELO3C025576Melon (DHL92) v3.5.1mewcgB133
ClCG01G011580CSPI01G15090Wild cucumber (PI 183967)cpiwcgB025
ClCG01G011580Cucsa.319600Cucumber (Gy14) v1cgywcgB552
ClCG01G011580Lsi02G011910Bottle gourd (USVL1VR-Ls)lsiwcgB169
ClCG01G011580CsGy1G014870Cucumber (Gy14) v2cgybwcgB021
ClCG01G011580MELO3C025576.2Melon (DHL92) v3.6.1medwcgB133
ClCG01G011580CsaV3_1G015190Cucumber (Chinese Long) v3cucwcgB024
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G011580Cucurbita pepo (Zucchini)cpewcgB006
ClCG01G011580Silver-seed gourdcarwcgB0000
ClCG01G011580Watermelon (97103) v2wcgwmbB089
ClCG01G011580Wax gourdwcgwgoB246
ClCG01G011580Cucurbita maxima (Rimu)cmawcgB180
ClCG01G011580Cucurbita maxima (Rimu)cmawcgB341
ClCG01G011580Cucurbita moschata (Rifu)cmowcgB171
ClCG01G011580Watermelon (97103) v1wcgwmB155