Csa1G084270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G084270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA-directed RNA polymerase; contains IPR015700 (DNA-directed RNA polymerase III largest subunit)
LocationChr1 : 8008776 .. 8012197 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTACTTCTTGTTGTGTTCTTCATTGATCGAAGATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATGTAAGTTTCCTTTTGTGGGTATTGAGAAGGTGTTGTTACTAGTGTGTCTGATGGTCTGTTTTTGTTTGTTTGTTTGTTTGGGTCTTACTACAGCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGTACGTATTATCATGGGGGATTGAAGGTTCATGCTCATTGATCGTAGTTTTTTCTGTCTTTGCTATTTAATATTGCGGTTGTGGAACACTGGAGAGCAAATTCAATTTACTTCACGATTTTAATACACTCTCCTTACAACCTTGGAAAATAAGCTTCCAGGCTTTATTAATCACGGGAACGAACTACGGACTGAATCTAGTAGGTGTTCGTGATTACGAAAATTAATTATATACACTAATGCTCCCTCTCTAAACGGGGAGCAAAGATTAAGAATGCACATCTTATCAGAAAGAAAATGAAGTTGTCTAGGCCAAGATAGTGAGTGCATCGGCAAAAGTTTGAGATAATCGTTTGGTATTGTATAACATGGATATATGTAGAATGAAAATCAATTTCTATATGCTCTAGATGCCCTAGAAAGGGTTGGGGGAATCCCTAAAAAATGTGTTCATTTCTTTTGTTCCATAATCAAGACAATAGACCTCTATCTGCATTGGTCCATACTAAGTGCACTTTCAATATCAAAGACGGCCCTGAAAAAAATTTGATGGACATTATCTCCAAAATGGTTGTGACCCACTTGACACAAAACAAAAGAAATAAATTAAGCTAGCACCAACCATCTTGGGTTGGTCTAATAATAAATATGGGTGCACGACCTTGATAAAGGGCCAAGATGTCATGAGTTCAATCCATGGTGTCCCACCTACTTAGGATTAAATATTATACAAGTTTGCCTGACACCTAGATGTTGTAAGGTCAGACAAGTTGTCTTGTGAATTTAGTTGCTGAGCTTTGTGTCCTTTAAAAAATTGAAGCTCGATGAGGTCTTTTAATGGTTTCATTAAGGATTGTAACCTCTTTGATCCCTCTTTGCTAAATGGGATATTCGCTTGGGCTAATTTCAGGGCGACTATGAGAATAGACAGATTTATCCTTTTTGAAGTGTGGATTGAAAGGTTTGGTTGCCGTAGGTAAATAAGGGGCTTGAGAGTCACCTCAGATCCTTGGCCACTAGTCTTAAAGTTTAAGATCAGTGGTGGGGGACTTGCCTATTTTTGCTTTGGAAACATGTGCTTGGATCACCCTTCTGTTAGAAACCAAGGTAGTATAGGATGATTTTGTCCCACATTAGTTAGAATGGGATAACCAACGACCAATGTGGTACTTGAGTGGCTTGGTTCTTTGATGTATACCAATGAGAGAATTTTATTAATGTTTAAAAGTTGTGAATACAAGTAGACAAGTGCTCTACTTATAATTGAAAAGCAAACTAATCCTAATCCTAATAAATCAAAGAAATTAATCCCAATCCTAAATAATAAAAGAAAACAATCCTAATCCTAATAAACCAAAGAAACTAATCCTAGTCCTAATAAATCAAAGAAATTAATCATAATCTTAATGGATTAACTATTTGACCATAATACCCCATTCCCACTACATCATTCTATCCCTAAAAAAAAGCTCATCCTAGGTAAAAATAAAAAGTTAAGCCAATTAAATGGAAACAACTTTGAAAAACTAATATAACAAACTTCCAAATAGCACAAGTCGAGCCAAGATTTATCTTTTGAAACAAAATCACCATGGATTAATTCATGAATTATGTTGTTAAAAAAATTCTCTGTTGCATAAAAATATATGCAGACTCCTCAAGGAATGGAGGAAAAAGATTTTCAATTTCTTTCGAATTAGGTTGCCCATGAGTATCTTTTTCTTCTACACTTAAAGAATTCACACTTGTTTAGAGTTGATATATACCAAATTGATTTTTTTTTTAATGAAAAAAACAACTTTCATTGAGAAAAAAAATAAAAGAATACAAGGGCATACAAAAAAACCAGCCCACAAAAGGACCCAAACTAATAGAAGGGGGACCAACCTAGAAGAATGTCACCAATGGAATAATTACAAAAGGATTTCGAAATTGAAGCCCAAAGGGATACATGAAATCTAATCAAAGACAAAACCCCGACGTGGTTATGATCCAAGAATAATAAAGGGAAAAATCTGGATGCAATGATAGCTGTTGACTCTATAGAAAAAAAGAAAATCACTTAGAGATGATGAATGCCCTGAGAGACTTTAAATAAATAAACCAGCTGGCTGCTATGGAGTCAGAAATTTAAGGCTTCTATGATGACCTTTTTTGCAGGGAAGGTAAGCCACTATTTCTTCCTATGGGTTTGAATTGGAGGCATATATACATCTTTAGATAGATGTTGGCTTGAATGAAGTAAGAAGAGCATGACTCTCTCTATGACACCTCCTTTTCTCAATCCCCTTTCCAACCTCACATCCCCTGCCACCATAGCCAAACAAACCATGTCAATTTACAACTTTTTGGTTAAATAAGACCTTAACTGAATTAATCTTCCTCCTACCTTTTGGCTGTTTAATTTTTTCATTAGTGGAAGTATGTCTCTTGTAAAAGAAAACTTGAACTTACCCGTCATTTGTCATAAAAGGTTTTTGGTGATGCCGTGGCCATGATTGCAAATTTCTCTATTGAATATTTCATTCTTTATCTTATCAGAAAATTATTGTAGTAAATGTTTGCCTTTTCTTTTGGGATTGTGTTTCAGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGGTATTGAAAAGACAAGTTATTTGCTTTCCCTGAATTAGTTTGATTCTCTTTGAACATTATTTCTCATCTGTAGAAGTTTCTTTACAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAAAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGGTGCTCAAGATGTGGATATTTAAATGGTTTGGATTTCACCTTTTATTTTGTTGTATACTCAAGCTGTTCCCATTTATATGTTATTCATAATTTATTCATCTCTGCTCTTTAG

mRNA sequence

ATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAAAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGGTGCTCAAGATGTGGATATTTAAATGGTTTGGATTTCACCTTTTATTTTGTTGTATACTCAAGCTGTTCCCATTTATATGTTATTCATAATTTATTCATCTCTGCTCTTTAG

Coding sequence (CDS)

ATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAAAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGGTGCTCAAGATGTGGATATTTAAATGGTTTGGATTTCACCTTTTATTTTGTTGTATACTCAAGCTGTTCCCATTTATATGTTATTCATAATTTATTCATCTCTGCTCTTTAG

Protein sequence

MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDFTFYFVVYSSCSHLYVIHNLFISAL*
Homology
[Close]
BLAST of Csa1G084270 vs. Swiss-Prot
Match: NRPC1_ARATH (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.5e-56
Identity = 101/169 (59.76%), Postives = 125/169 (73.96%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130
            NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK CS +LL+EKL+
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128

Query: 131 KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGL 180
           +D LRKMRNP++E L+K +L K ++KKCST+ +  +   C +CGYLNG+
Sbjct: 129 EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGM 176

[Close]
BLAST of Csa1G084270 vs. Swiss-Prot
Match: RPC1_YEAST (DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-32
Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = 1 

Query: 22  PRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTT--RKPIDGGLLDPRMGPANKGCKCAT 81
           P++IK ++F+  S A+I   +EV+V     +D    R P   G LDP+MG ++   +CAT
Sbjct: 10  PKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECAT 69

Query: 82  CHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRKMRN 141
           CH N   C GH+G++ LALPVF++GYF   ++IL+ ICK+CS ILL E   + FL ++R 
Sbjct: 70  CHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRR 129

Query: 142 PKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGL 180
           P ++ LR++ ++KKI+ +C       K  RC  CG LNG+
Sbjct: 130 PGVDNLRRMGILKKILDQC------KKQRRCLHCGALNGV 163

[Close]
BLAST of Csa1G084270 vs. Swiss-Prot
Match: RPC1_DICDI (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.8e-31
Identity = 69/163 (42.33%), Postives = 98/163 (60.12%), Query Frame = 1 

Query: 18  EDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTT-RKPIDGGLLDPRMGPANKGCK 77
           ED  P+KI  +QF   S  +I +L+ VQ+     +D   RKP   G+LD ++G ++K   
Sbjct: 7   EDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAM 66

Query: 78  CATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRK 137
           C TC  +  DC GH+GY+ L LPVF++GY   I+ IL+ ICKSCS ILL E+  + +LRK
Sbjct: 67  CTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRK 126

Query: 138 MRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGL 180
           MRN K++ L++  L+KKI  +C       K+  C +CG  NG+
Sbjct: 127 MRNKKMDNLQRKSLLKKIFLEC------RKTKECLKCGSTNGM 163

[Close]
BLAST of Csa1G084270 vs. Swiss-Prot
Match: RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.4e-29
Identity = 73/186 (39.25%), Postives = 98/186 (52.69%), Query Frame = 1 

Query: 17  IEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLDPRMGPANKGC 76
           I+D  P++IK +QF      E  K   V+V +  LY  T R P + G LD  MG +NK  
Sbjct: 5   IDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQI 64

Query: 77  KCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLR 136
            CATC  +  DC GH+GYV LALPVF++GYF   L IL+ ICK CS +LL ++  + FL+
Sbjct: 65  NCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLK 124

Query: 137 KMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDFTFYFVVYSSCSHLY 196
            +R P ++ LR+  + K+I   C       K  RCS+C  + G        V      L 
Sbjct: 125 DLRRPGIDNLRRSQICKRINDHC------KKMRRCSKCDAMQG--------VVKKAGPLK 176

Query: 197 VIHNLF 202
           +IH  F
Sbjct: 185 IIHERF 176

[Close]
BLAST of Csa1G084270 vs. Swiss-Prot
Match: RPC1_CHICK (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.2e-26
Identity = 72/191 (37.70%), Postives = 97/191 (50.79%), Query Frame = 1 

Query: 13  KQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVY-KGLY-YDTTRKPIDGGLLDPRMGP 72
           K+ + E    +KI  + F   S  E+ + A +QV  K LY  D    P+  G+LD RMG 
Sbjct: 3   KEQFRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGT 62

Query: 73  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 132
           + K   C TC  N  DC GHYGY++L LP F+VGYF  ++ IL+ ICK+C RI+L  +  
Sbjct: 63  SEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEK 122

Query: 133 KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDFTFYFVVYSS 192
           K FL  ++ P L  L+K  L KK+ +KC       K   C  CG  NG            
Sbjct: 123 KQFLDYLKRPGLTYLQKRGLKKKVSEKC------RKKNTCPYCGAFNG--------TVKK 179

Query: 193 CSHLYVIHNLF 202
           C  L +IH  +
Sbjct: 183 CGLLKIIHEKY 179

[Close]
BLAST of Csa1G084270 vs. TrEMBL
Match: A0A0A0LSG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.0e-116
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180

Query: 181 FTFYFVVYSSCSHLYVIHNLFISAL 206
           FTFYFVVYSSCSHLYVIHNLFISAL
Sbjct: 181 FTFYFVVYSSCSHLYVIHNLFISAL 205

[Close]
BLAST of Csa1G084270 vs. TrEMBL
Match: W9REK1_9ROSA (DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.6e-68
Identity = 122/184 (66.30%), Postives = 153/184 (83.15%), Query Frame = 1 

Query: 2   NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61
           +R Q + ++FTKQP++EDVGPR+IKSMQFT  S +EISK+AEVQV+KG YYD  RKP++ 
Sbjct: 4   SRDQAQNILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKPVED 63

Query: 62  GLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCS 121
           GLLDPRMGPANK  +CATCH  F DCPGHYGY+ LALPV+NVGY +TIL+ILKCICKSCS
Sbjct: 64  GLLDPRMGPANKFSECATCHGRFSDCPGHYGYLKLALPVYNVGYLSTILDILKCICKSCS 123

Query: 122 RILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDF 181
           RILL+EKL KDFL+KMR+ K+E L+K +L+KKI+KKC+     +K+ +CS+CGY+NGL  
Sbjct: 124 RILLDEKLRKDFLKKMRSSKMEPLKKGELMKKIVKKCN-----SKAVKCSKCGYINGLSS 182

Query: 182 TFYF 186
            F F
Sbjct: 184 IFAF 182

[Close]
BLAST of Csa1G084270 vs. TrEMBL
Match: A0A061FU60_THECC (DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.2e-66
Identity = 116/168 (69.05%), Postives = 147/168 (87.50%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGPRKIKS+QF+  S +EI+K AEVQVY+ LYYD   +PI+GGLLDPRMGP
Sbjct: 5   FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130
           ANK  KCATCH NF DCPGHYGY++LALPV+NVGY +TIL+ILKCICKSCSRI+L+EKL 
Sbjct: 65  ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 131 KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNG 179
           KD+L++MR+PK++AL+K D++K I+KKCS + + +K+ +C RCGY+NG
Sbjct: 125 KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMAS-SKAVKCWRCGYVNG 171

[Close]
BLAST of Csa1G084270 vs. TrEMBL
Match: F6GTV9_VITVI (DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_06s0004g03740 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.1e-66
Identity = 118/193 (61.14%), Postives = 155/193 (80.31%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           +G+ FTK+PYIEDVGPRKI+S++F  FS +EISK AEVQV++G+YYD  RKPI+ GLLDP
Sbjct: 3   DGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDP 62

Query: 67  RMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 126
           RMGPANK   CATC  NF DCPGH GY+ LALPV+NVGY +TI++ILKCICKSCSR+LL+
Sbjct: 63  RMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLD 122

Query: 127 EKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDFTFYFV 186
           EK  KD+L+KMR+ K+EAL+K +L+KKI++KC+ + +  K+ +CSRCGY+NG       +
Sbjct: 123 EKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNG-------I 182

Query: 187 VYSSCSHLYVIHN 200
           V  + S L +IH+
Sbjct: 183 VKKAVSVLGIIHD 188

[Close]
BLAST of Csa1G084270 vs. TrEMBL
Match: V4SLI9_9ROSI (DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.1e-66
Identity = 121/188 (64.36%), Postives = 146/188 (77.66%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           + + FTKQPYIEDVGPRKI+S+QF+  S +EI K AEVQVYKG YY + R PI+GGLLDP
Sbjct: 10  QSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDP 69

Query: 67  RM---------------GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILE 126
           RM               GPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+
Sbjct: 70  RMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILD 129

Query: 127 ILKCICKSCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCS 180
           ILKCICK CSR+LLEEKL KD+L+KMRNPK+EALRK DL+K I+KKCST+   +K+ +C 
Sbjct: 130 ILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTM--ASKAVKCP 189

[Close]
BLAST of Csa1G084270 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 211.8 bits (538), Expect = 3.9e-55
Identity = 101/179 (56.42%), Postives = 125/179 (69.83%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICK----------SC 130
            NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK           C
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRC 128

Query: 131 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGL 180
           S +LL+EKL++D LRKMRNP++E L+K +L K ++KKCST+ +  +   C +CGYLNG+
Sbjct: 129 SNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS-QRIITCKKCGYLNGM 186

[Close]
BLAST of Csa1G084270 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-22
Identity = 56/143 (39.16%), Postives = 85/143 (59.44%), Query Frame = 1 

Query: 24  KIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRK--PIDGGLLDPRMGPANKGCKCATCH 83
           K++ +QF   S  EI +++ + V    + +TT K  P  GGL D R+G  ++  KC TC 
Sbjct: 14  KVRVVQFGILSPDEIRQMSVIHVE---HSETTEKGKPKVGGLSDTRLGTIDRKVKCETCM 73

Query: 84  ANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILL--EEKLFKDFLRKMRN 143
           AN  +CPGH+GY+ LA P+++VG+  T+L I++C+C +CS+IL   EE  FK  + K++N
Sbjct: 74  ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQAM-KIKN 133

Query: 144 PKLEALRKVDLVKKIIKKCSTLT 163
           PK       + +KKI+  C   T
Sbjct: 134 PK-------NRLKKILDACKNKT 145

[Close]
BLAST of Csa1G084270 vs. NCBI nr
Match: gi|700209632|gb|KGN64728.1| (hypothetical protein Csa_1G084270 [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 2.8e-116
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180

Query: 181 FTFYFVVYSSCSHLYVIHNLFISAL 206
           FTFYFVVYSSCSHLYVIHNLFISAL
Sbjct: 181 FTFYFVVYSSCSHLYVIHNLFISAL 205

[Close]
BLAST of Csa1G084270 vs. NCBI nr
Match: gi|449462093|ref|XP_004148776.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus])

HSP 1 Score: 371.3 bits (952), Expect = 1.1e-99
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNG 179
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNG
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNG 178

[Close]
BLAST of Csa1G084270 vs. NCBI nr
Match: gi|659130677|ref|XP_008465290.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cucumis melo])

HSP 1 Score: 364.8 bits (935), Expect = 1.0e-97
Identity = 173/178 (97.19%), Postives = 177/178 (99.44%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYVNL+LPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNG 179
           SRILLEEKL+KDFLRKMRNPKLEALRK DLVKKIIKKCSTLTTGNKST+CSRCGYLNG
Sbjct: 121 SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNG 178

[Close]
BLAST of Csa1G084270 vs. NCBI nr
Match: gi|568870032|ref|XP_006488216.1| (PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis])

HSP 1 Score: 268.5 bits (685), Expect = 9.9e-69
Identity = 121/173 (69.94%), Postives = 146/173 (84.39%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           + + FTKQPYIEDVGPRKI+S+QF+  S +EI K AEVQVYKG YY + R PI+GGLLDP
Sbjct: 10  QSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDP 69

Query: 67  RMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 126
           RMGPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+ILKCICK CSR+LLE
Sbjct: 70  RMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLE 129

Query: 127 EKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGL 180
           EKL KD+L+KMRNPK+EALRK DL+K I+KKCST+   +K+ +C RCGY+NG+
Sbjct: 130 EKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTM--ASKAVKCPRCGYINGM 180

[Close]
BLAST of Csa1G084270 vs. NCBI nr
Match: gi|703086395|ref|XP_010092992.1| (DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis])

HSP 1 Score: 266.5 bits (680), Expect = 3.8e-68
Identity = 122/184 (66.30%), Postives = 153/184 (83.15%), Query Frame = 1 

Query: 2   NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61
           +R Q + ++FTKQP++EDVGPR+IKSMQFT  S +EISK+AEVQV+KG YYD  RKP++ 
Sbjct: 4   SRDQAQNILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKPVED 63

Query: 62  GLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCS 121
           GLLDPRMGPANK  +CATCH  F DCPGHYGY+ LALPV+NVGY +TIL+ILKCICKSCS
Sbjct: 64  GLLDPRMGPANKFSECATCHGRFSDCPGHYGYLKLALPVYNVGYLSTILDILKCICKSCS 123

Query: 122 RILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLDF 181
           RILL+EKL KDFL+KMR+ K+E L+K +L+KKI+KKC+     +K+ +CS+CGY+NGL  
Sbjct: 124 RILLDEKLRKDFLKKMRSSKMEPLKKGELMKKIVKKCN-----SKAVKCSKCGYINGLSS 182

Query: 182 TFYF 186
            F F
Sbjct: 184 IFAF 182

The following BLAST results are available for this feature:
BLAST of Csa1G084270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPC1_ARATH2.5e-5659.76DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 ... [more]
RPC1_YEAST5.7e-3241.88DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain... [more]
RPC1_DICDI4.8e-3142.33DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr... [more]
RPC1_SCHPO3.4e-2939.25DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strai... [more]
RPC1_CHICK1.2e-2637.70DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=... [more]
BLAST of Csa1G084270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSG9_CUCSA2.0e-116100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1[more]
W9REK1_9ROSA2.6e-6866.30DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 P... [more]
A0A061FU60_THECC3.2e-6669.05DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1[more]
F6GTV9_VITVI7.1e-6661.14DNA-directed RNA polymerase subunit OS=Vitis vinifera GN=VIT_06s0004g03740 PE=3 ... [more]
V4SLI9_9ROSI7.1e-6664.36DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE... [more]
BLAST of Csa1G084270 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60040.23.9e-5556.42 nuclear RNA polymerase C1[more]
AT4G35800.12.5e-2239.16 RNA polymerase II large subunit[more]
BLAST of Csa1G084270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209632|gb|KGN64728.1|2.8e-116100.00hypothetical protein Csa_1G084270 [Cucumis sativus][more]
gi|449462093|ref|XP_004148776.1|1.1e-99100.00PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus][more]
gi|659130677|ref|XP_008465290.1|1.0e-9797.19PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cu... [more]
gi|568870032|ref|XP_006488216.1|9.9e-6969.94PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis][more]
gi|703086395|ref|XP_010092992.1|3.8e-6866.30DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU161987cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G084270.1Csa1G084270.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU161987CU161987transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 23..174
score: 4.1
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 12..179
score: 1.4
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 12..179
score: 1.4
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 23..182
score: 2.75