Cucsa.226950 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.226950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	DNA-directed RNA polymerase subunit
Location	scaffold01910 : 79068 .. 79453 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCCTTTTCTTTTGGGATTGTGTTTCAGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGGTATTGAAAAGACAAGTTATTTGCTTTCCCTGAATTAGTTTGATTCTCTTTGAACATTATTTCTCATCTGTAGAAGTTTCTTTACAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAaTCATAAAAAa

mRNA sequence

ATGTTTGCCTTTTCTTTTGGGATTGTGTTTCAGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAAAA

Coding sequence (CDS)

ATGTTTGCCTTTTCTTTTGGGATTGTGTTTCAGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAaTCATAAAAAa

Protein sequence

MFAFSFGIVFQGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKX

Homology

[Close]

BLAST of Cucsa.226950 vs. Swiss-Prot
Match: NRPC1_ARATH (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.7e-29
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GP NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK CS +LL+EK
Sbjct: 67  GPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK 126

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L++D LRKMRNP++E L+K +L K ++K
Sbjct: 127 LYEDHLRKMRNPRMEPLKKTELAKAVVK 154

[Close]

BLAST of Cucsa.226950 vs. Swiss-Prot
Match: RPC1_DEBHA (DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPC1 PE=3 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-21
Identity = 39/88 (44.32%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           G ++   +CATCH N   C GH+G++ LALPVF+VGYF   +++L+CICK+CS +LL+E+
Sbjct: 59  GISSNANECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQ 118

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
             + FL  +R P ++ LR++ ++KK+++
Sbjct: 119 TKRSFLNDLRRPHIDNLRRMKILKKLLE 146

[Close]

BLAST of Cucsa.226950 vs. Swiss-Prot
Match: RPC1_YEAST (DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.5e-19
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           G ++   +CATCH N   C GH+G++ LALPVF++GYF   ++IL+ ICK+CS ILL E 
Sbjct: 59  GVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSET 118

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKII 99
             + FL ++R P ++ LR++ ++KKI+
Sbjct: 119 DKRQFLHELRRPGVDNLRRMGILKKIL 145

[Close]

BLAST of Cucsa.226950 vs. Swiss-Prot
Match: RPC1_DICDI (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-19
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           G ++K   C TC  +  DC GH+GY+ L LPVF++GY   I+ IL+ ICKSCS ILL E+
Sbjct: 59  GTSDKQAMCTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEE 118

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKI 98
             + +LRKMRN K++ L++  L+KKI
Sbjct: 119 KKQYYLRKMRNKKMDNLQRKSLLKKI 144

[Close]

BLAST of Cucsa.226950 vs. Swiss-Prot
Match: RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           G +NK   CATC  +  DC GH+GYV LALPVF++GYF   L IL+ ICK CS +LL ++
Sbjct: 58  GTSNKQINCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQ 117

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKI 98
             + FL+ +R P ++ LR+  + K+I
Sbjct: 118 EKRQFLKDLRRPGIDNLRRSQICKRI 143

[Close]

BLAST of Cucsa.226950 vs. TrEMBL
Match: A0A0A0LSG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.4e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK
Sbjct: 69  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           LFKDFLRKMRNPKLEALRKVDLVKKIIK
Sbjct: 129 LFKDFLRKMRNPKLEALRKVDLVKKIIK 156

[Close]

BLAST of Cucsa.226950 vs. TrEMBL
Match: V4SLI9_9ROSI (DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.9e-35
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1


Query: 10  FQGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 69
           FQGPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+ILKCICK CSR+LLE
Sbjct: 85  FQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLE 144

Query: 70  EKLFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           EKL KD+L+KMRNPK+EALRK DL+K I+K
Sbjct: 145 EKLCKDYLKKMRNPKMEALRKTDLMKSIVK 174

[Close]

BLAST of Cucsa.226950 vs. TrEMBL
Match: A0A061FU60_THECC (DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.0e-33
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANK  KCATCH NF DCPGHYGY++LALPV+NVGY +TIL+ILKCICKSCSRI+L+EK
Sbjct: 63  GPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEK 122

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L KD+L++MR+PK++AL+K D++K I+K
Sbjct: 123 LCKDYLKRMRSPKIDALKKGDIMKSIVK 150

[Close]

BLAST of Cucsa.226950 vs. TrEMBL
Match: W9REK1_9ROSA (DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-31
Identity = 64/88 (72.73%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANK  +CATCH  F DCPGHYGY+ LALPV+NVGY +TIL+ILKCICKSCSRILL+EK
Sbjct: 71  GPANKFSECATCHGRFSDCPGHYGYLKLALPVYNVGYLSTILDILKCICKSCSRILLDEK 130

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L KDFL+KMR+ K+E L+K +L+KKI+K
Sbjct: 131 LRKDFLKKMRSSKMEPLKKGELMKKIVK 158

[Close]

BLAST of Cucsa.226950 vs. TrEMBL
Match: A0A0D2QKE9_GOSRA (DNA-directed RNA polymerase subunit OS=Gossypium raimondii GN=B456_003G139100 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.9e-30
Identity = 59/88 (67.05%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GP NK  KCATC  +FGDCPGHYGY+ L LPV+NVGY +TIL+ILKCICKSCSRILL++K
Sbjct: 68  GPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLDDK 127

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L KD+L+KMR PK E L+K +++K ++K
Sbjct: 128 LAKDYLKKMRAPKTEPLKKAEIMKSVVK 155

[Close]

BLAST of Cucsa.226950 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 120.6 bits (301), Expect = 5.7e-28
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICK---------- 71
           GP NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK          
Sbjct: 67  GPPNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSL 126

Query: 72  SCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIK 100
            CS +LL+EKL++D LRKMRNP++E L+K +L K ++K
Sbjct: 127 RCSNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVK 164

[Close]

BLAST of Cucsa.226950 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-16
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILL--E 71
           G  ++  KC TC AN  +CPGH+GY+ LA P+++VG+  T+L I++C+C +CS+IL   E
Sbjct: 58  GTIDRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEE 117

Query: 72  EKLFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           E  FK  + K++NPK    + +D  K   K
Sbjct: 118 EHKFKQAM-KIKNPKNRLKKILDACKNKTK 146

[Close]

BLAST of Cucsa.226950 vs. NCBI nr
Match: gi|449462093|ref|XP_004148776.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK
Sbjct: 69  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           LFKDFLRKMRNPKLEALRKVDLVKKIIK
Sbjct: 129 LFKDFLRKMRNPKLEALRKVDLVKKIIK 156

[Close]

BLAST of Cucsa.226950 vs. NCBI nr
Match: gi|700209632|gb|KGN64728.1| (hypothetical protein Csa_1G084270 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 4.8e-45
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK
Sbjct: 69  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           LFKDFLRKMRNPKLEALRKVDLVKKIIK
Sbjct: 129 LFKDFLRKMRNPKLEALRKVDLVKKIIK 156

[Close]

BLAST of Cucsa.226950 vs. NCBI nr
Match: gi|659130677|ref|XP_008465290.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANKGCKC+TCHANFGDCPGHYGYVNL+LPVFNVGYFTTILEILKCICKSCSRILLEEK
Sbjct: 69  GPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSCSRILLEEK 128

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L+KDFLRKMRNPKLEALRK DLVKKIIK
Sbjct: 129 LYKDFLRKMRNPKLEALRKCDLVKKIIK 156

[Close]

BLAST of Cucsa.226950 vs. NCBI nr
Match: gi|567864104|ref|XP_006424701.1| (hypothetical protein CICLE_v10027681mg [Citrus clementina])

HSP 1 Score: 156.4 bits (394), Expect = 2.7e-35
Identity = 68/90 (75.56%), Postives = 79/90 (87.78%), Query Frame = 1


Query: 10  FQGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 69
           FQGPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+ILKCICK CSR+LLE
Sbjct: 85  FQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLE 144

Query: 70  EKLFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           EKL KD+L+KMRNPK+EALRK DL+K I+K
Sbjct: 145 EKLCKDYLKKMRNPKMEALRKTDLMKSIVK 174

[Close]

BLAST of Cucsa.226950 vs. NCBI nr
Match: gi|568870032|ref|XP_006488216.1| (PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis])

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-34
Identity = 66/88 (75.00%), Postives = 77/88 (87.50%), Query Frame = 1


Query: 12  GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEK 71
           GPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+ILKCICK CSR+LLEEK
Sbjct: 72  GPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLEEK 131

Query: 72  LFKDFLRKMRNPKLEALRKVDLVKKIIK 100
           L KD+L+KMRNPK+EALRK DL+K I+K
Sbjct: 132 LCKDYLKKMRNPKMEALRKTDLMKSIVK 159

The following BLAST results are available for this feature:

BLAST of Cucsa.226950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPC1_ARATH	3.7e-29	62.50	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 ...	[more]
RPC1_DEBHA	4.9e-21	44.32	DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain AT...	[more]
RPC1_YEAST	3.5e-19	45.98	DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain...	[more]
RPC1_DICDI	4.5e-19	50.00	DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr...	[more]
RPC1_SCHPO	1.3e-18	47.67	DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strai...	[more]

BLAST of Cucsa.226950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSG9_CUCSA	3.4e-45	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1	[more]
V4SLI9_9ROSI	1.9e-35	75.56	DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE...	[more]
A0A061FU60_THECC	5.0e-33	71.59	DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1	[more]
W9REK1_9ROSA	1.2e-31	72.73	DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 P...	[more]
A0A0D2QKE9_GOSRA	8.9e-30	67.05	DNA-directed RNA polymerase subunit OS=Gossypium raimondii GN=B456_003G139100 PE...	[more]

BLAST of Cucsa.226950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60040.2	5.7e-28	56.12	nuclear RNA polymerase C1	[more]
AT4G35800.1	1.7e-16	42.22	RNA polymerase II large subunit	[more]

BLAST of Cucsa.226950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462093\|ref\|XP_004148776.1\|	4.8e-45	100.00	PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus]	[more]
gi\|700209632\|gb\|KGN64728.1\|	4.8e-45	100.00	hypothetical protein Csa_1G084270 [Cucumis sativus]	[more]
gi\|659130677\|ref\|XP_008465290.1\|	2.0e-43	95.45	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cu...	[more]
gi\|567864104\|ref\|XP_006424701.1\|	2.7e-35	75.56	hypothetical protein CICLE_v10027681mg [Citrus clementina]	[more]
gi\|568870032\|ref\|XP_006488216.1\|	5.0e-34	75.00	PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007080	RNA_pol_Rpb1_1

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.226950.1	Cucsa.226950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 14..89 score: 6.5
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 10..98 score: 9.4
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 11..81 score: 5.26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.226950	Csa1G084270	Cucumber (Chinese Long) v2	cgycuB323
Cucsa.226950	CSPI01G12620	Wild cucumber (PI 183967)	cgycpiB337
Cucsa.226950	CmaCh13G001700	Cucurbita maxima (Rimu)	cgycmaB0631
Cucsa.226950	CmoCh13G001750	Cucurbita moschata (Rifu)	cgycmoB0634
Cucsa.226950	Lsi02G014150	Bottle gourd (USVL1VR-Ls)	cgylsiB371
Cucsa.226950	Cp4.1LG20g08950	Cucurbita pepo (Zucchini)	cgycpeB0604
Cucsa.226950	MELO3C026854.2	Melon (DHL92) v3.6.1	cgymedB383
Cucsa.226950	CsaV3_1G012790	Cucumber (Chinese Long) v3	cgycucB343
Cucsa.226950	Cla97C03G053130	Watermelon (97103) v2	cgywmbB402
Cucsa.226950	Carg21046	Silver-seed gourd	carcgyB0820

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.226950	Melon (DHL92) v3.5.1	cgymeB385
Cucsa.226950	Watermelon (Charleston Gray)	cgywcgB400
Cucsa.226950	Watermelon (97103) v1	cgywmB429