CSPI01G12620 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G12620
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionDNA-directed RNA polymerase subunit
LocationChr1 : 8064080 .. 8067612 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGTTGTTGTTTGTCCTTCTACTTCTTGTTGTGTTCTTCATTGATCGAAGATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATGTAAGTTTCCTTTTGTGGGTATTGAGAAGGTGTTGTTACTAGTGTGTCTGATGGTCTGTTTTTGTTTGTTTGTTTGTTTGGGTCTTACTACAGCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGTACGTATTATCATGGGGGATTGAAGGTTCATGCTCATTGATCGTAGTTTTTTCTGTCTTTGCTATTTAATATTGCGGTTGTGGAACACTGGAGAGCAAATTCAATTTACTTCACGATTTTAATACACTCTCCTTACAACCTTGGAAAATAAGCTTCCAGGCTTTATTAATCACGGGAACGAACTACGGACTGAATCTAGTAGGTGTTCGTGATTACGACAATTAATTATATACACTAATGCTCCCTCTCTAAACGGGGAGCAAAGATTAAGAATGCACATCTTATCAGAAAGAAAAGGAAGTTGTCTAGGCCAAGATAGTGAGTGCATTGGCAAAAGTTTGAGATAATCGTTTGGTATTGTATAACATGGATATATGTAGAATGAAAATCAATTTCTATATGCTCTAGATGCCCTAGAAAGGGTTGGGGGAATCCCTAAAAAATGTGTTCATTTCTTTTGTTCCATAATCAAGACAATAGACCTCTATTTGCATTGGTCCATACTAAGTGCACTTTCAATATCAAAGACGGCCCTGAAAAAAATTTGATGGACATTATCTCCAAAATGGTTGTGACCCACTTGACACAGAACAAAAGAAATAAATTAAGCTAGCACCAACCATCTTGGGTTGGTCTAATAATAAATATGGGTGCACGACCTTGATAAAGGGCCAAGATGTCATGAGTTCAATCCATGGTGTCCCACCTACTTAGGATTAAATATTATACAAGTTTGGCTGACACCTAGATGTTGTAAGGTCAGACAAGTTGTCTTGTGAATTTAGTTGCTGAGCTTTGTGTCCTTTAAAAAATTGAAGCTCGATGAGGTCTTTTAATGGTTTCATTAAGGATTGTAACCTCTTTGATCCCTCTTTGCTAAATGGGATATTCGCTTGGGCTAATTTCAGGGCGACTATGAGAATAGACAGATTTATCCTTTTTGAAGTGTGGATTGAAAGGTTTGGTTGCCGTAGGTAAATAAGGGGCTTGAGAGTCACCTCAGATCCTTGGCCACTAGTCTTAAAGTTTAAGATCAGTGGTGGGGGACTTGCCTATTTTTGCTTTGGAAACATGTGCTTGGATCACCCTTCTGTTAGAAACCAAGGTAATATAGGATGATTTTGTCCCACATTAGTTAGAATGGGATAACCAACGACCAATGTGGTACTTGAGTGGCTTGGTTCTTTGATGTATACCAATGAGAGAATTTTATTAATGTTTAAAAGTTGTGAATACAAGTAGACAAGTGCTCTACTTATAATTGAAAAGCAAACTAATCCTAATCCTAATAAATCAAAGAAATTAATCCCAATCCTAAATAATAAAAGAAACCAATCCTAATCCTAATAAACCAAAGAGACTAATCCTAGTCCTAATAAATCAAAGAAATTAATCATAATCTTAATGGATTAACTATTTGACCATAATACCCCATTCCCACTACATCATTCTATCCCTAAAAAAAAGCTCATCCTAGGTAAAAATAAAAAGTTAAGCCAATTAAATGGAAACAACTTTGAAAAACTAATATAACAAACTTCCAAATAGCACAAGTCGAGCCAAGATTTATCTTTTGAAACAAAATCCCCATGGATTAATTCATGAATTATGTTGTTAAAAAAATTCTCTGTTGCATAAAAATATATGCAGACTCCTCAAGGAATGGAGGAAAAAGATTTTCAATTTCTTTCGAATTAGGTTGCCCATGAGTATCTTTTTCTTCTACACTTAAAGAATTCACACTTGTTTAGAGTTGATATATACCAAATTGATTTTTTTTTAATGAAAAAACAACTTTCATTGAGAAAAAAAAATAAAAGAATACAAGGGCATACAAAAAAACCAGCCCACAAAAGGACCCAAACTAATAGAAGGGGGACCAACCTAGAAGAATGTCACCAATGGAATAATTACAAAAGGATTTCGAAATTGAAGCCCAAAGGGATACATGAAATCTAATCAAAGACAAAACCCCGATGTGGTTATGATCCAAGAATAATAAAGGGAAAATCTGGATGCAATGATAGCTGTTGACTCGATAGAAAAAAAAAAAATCACTTAGAGATGATGAATGCCCTGAGAGACTTTAAATAAATAAACCAGCTGGCTGCTATGGAGTCAGAAATTTAAGGCTTCTATGATGACCTTTTTTGCAGGGAAGGTAAGCCACTATTTCTTCCTATGGGTTTGAATTGGAGGCATATATACATCTTTAGATAGATGTTGGCTTGAATGAAGTAAGAAGAGCATGACTCTCTCTATGACACCTCCTTTTCTCAATCCCCTTTCCAACCTCACATCCCCTGCCACCATAGCCAAACAAACCATGTCAATTTACAACTTTTTGGTTAAATAAGACCTTAACTGAATTAATACTTCCTCCTACCTTTTGGCTGTTTAATTTTTTCATTAGTGGAAGTATGTCTCTTGTAAAAGAAAACTTGAACTTACCCGTCATTTGTCATAAAAGGTTTTTGGTGATGCCGTGGCCATGAATGCAAATTTCTCTATTGAATATTTCATTCTTTATCTTATCAGAAAATTATTGTAGTAAATGTTTGCCTTTTCTTTTGGGATTGTGTTTCAGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGGTATTGAAAAGACAAGTTATTTGCTTTCCCTGAATTAGTTTGATTCTCTTTGAACATTATTTCTCATCTGTAGAAGTTTCTTTACAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAGAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGGTGCTCAAGATGTGGATATTTAAATGGTTTGGATTTCACCTTTTATTTTGTTGTATACTCAAGCTGTTCCCATTTATATGTTATTCATAATTTATTCATCTCTGCTCTTTAGACTTCTCTCCTCCTTAGATGCTTGCTATTATTTGTTACCTAAATTGTTTAAGACAAGGGAATTGATCTCAACTCTATTAGCAAACGTGCATGCATGA

mRNA sequence

ATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAGAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGACTTCTCTCCTCCTTAGATGCTTGCTATTATTTGTTACCTAAATTGTTTAAGACAAGGGAATTGATCTCAACTCTATTAGCAAACGTGCATGCATGA

Coding sequence (CDS)

ATGAATAGAGCACAAGTGGAAGGTCTGGTGTTTACTAAGCAACCATACATTGAGGATGTTGGGCCTCGCAAAATCAAGAGCATGCAGTTCACTACCTTTTCGGGAGCCGAAATTAGCAAATTGGCTGAAGTTCAGGTGTACAAAGGTTTATATTATGATACTACTCGGAAACCCATCGACGGCGGCTTGTTGGATCCACGAATGGGGCCTGCTAATAAGGGCTGCAAGTGTGCTACATGCCATGCCAATTTTGGTGACTGCCCAGGACATTATGGATACGTGAATCTCGCTCTCCCTGTTTTTAATGTTGGTTACTTTACTACAATATTGGAAATACTCAAGTGCATTTGCAAGTCATGTTCTCGTATACTTTTGGAAGAGAAGCTTTTTAAAGATTTCTTGAGGAAGATGAGAAATCCCAAATTGGAGGCCTTGCGGAAGGTTGATCTTGTGAAAAAAATCATAAAGAAGTGTTCTACCTTGACAACTGGCAATAAAAGCACGAGACTTCTCTCCTCCTTAGATGCTTGCTATTATTTGTTACCTAAATTGTTTAAGACAAGGGAATTGATCTCAACTCTATTAGCAAACGTGCATGCATGA
Homology
[Close]
BLAST of CSPI01G12620 vs. Swiss-Prot
Match: NRPC1_ARATH (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 94/153 (61.44%), Postives = 117/153 (76.47%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130
            NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK CS +LL+EKL+
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEKLY 128

Query: 131 KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTT 164
           +D LRKMRNP++E L+K +L K ++KKCST+ +
Sbjct: 129 EDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS 161

[Close]
BLAST of CSPI01G12620 vs. Swiss-Prot
Match: RPC1_DEBHA (DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPC1 PE=3 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.6e-31
Identity = 61/144 (42.36%), Postives = 97/144 (67.36%), Query Frame = 1 

Query: 17  IEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTT--RKPIDGGLLDPRMGPANKG 76
           + DV P+ IK ++F   S  +I   +EV+V+    YD    R P DGG LD +MG ++  
Sbjct: 5   VVDVAPKCIKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNA 64

Query: 77  CKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFL 136
            +CATCH N   C GH+G++ LALPVF+VGYF   +++L+CICK+CS +LL+E+  + FL
Sbjct: 65  NECATCHGNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFL 124

Query: 137 RKMRNPKLEALRKVDLVKKIIKKC 159
             +R P ++ LR++ ++KK++++C
Sbjct: 125 NDLRRPHIDNLRRMKILKKLLEQC 148

[Close]
BLAST of CSPI01G12620 vs. Swiss-Prot
Match: RPC1_YEAST (DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.7e-28
Identity = 59/139 (42.45%), Postives = 92/139 (66.19%), Query Frame = 1 

Query: 22  PRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTT--RKPIDGGLLDPRMGPANKGCKCAT 81
           P++IK ++F+  S A+I   +EV+V     +D    R P   G LDP+MG ++   +CAT
Sbjct: 10  PKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECAT 69

Query: 82  CHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRKMRN 141
           CH N   C GH+G++ LALPVF++GYF   ++IL+ ICK+CS ILL E   + FL ++R 
Sbjct: 70  CHGNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRR 129

Query: 142 PKLEALRKVDLVKKIIKKC 159
           P ++ LR++ ++KKI+ +C
Sbjct: 130 PGVDNLRRMGILKKILDQC 148

[Close]
BLAST of CSPI01G12620 vs. Swiss-Prot
Match: RPC1_DICDI (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.3e-28
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 1 

Query: 18  EDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTT-RKPIDGGLLDPRMGPANKGCK 77
           ED  P+KI  +QF   S  +I +L+ VQ+     +D   RKP   G+LD ++G ++K   
Sbjct: 7   EDDAPKKIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAM 66

Query: 78  CATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLRK 137
           C TC  +  DC GH+GY+ L LPVF++GY   I+ IL+ ICKSCS ILL E+  + +LRK
Sbjct: 67  CTTCGLSIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQYYLRK 126

Query: 138 MRNPKLEALRKVDLVKKIIKKC 159
           MRN K++ L++  L+KKI  +C
Sbjct: 127 MRNKKMDNLQRKSLLKKIFLEC 148

[Close]
BLAST of CSPI01G12620 vs. Swiss-Prot
Match: RPC1_SCHPO (DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-26
Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = 1 

Query: 17  IEDVGPRKIKSMQFTTFSGAEISKLAEVQVYK-GLYYDTTRKPIDGGLLDPRMGPANKGC 76
           I+D  P++IK +QF      E  K   V+V +  LY  T R P + G LD  MG +NK  
Sbjct: 5   IDDQIPKRIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGALDLHMGTSNKQI 64

Query: 77  KCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLFKDFLR 136
            CATC  +  DC GH+GYV LALPVF++GYF   L IL+ ICK CS +LL ++  + FL+
Sbjct: 65  NCATCGESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLK 124

Query: 137 KMRNPKLEALRKVDLVKKIIKKCSTLTTGNK 167
            +R P ++ LR+  + K+I   C  +   +K
Sbjct: 125 DLRRPGIDNLRRSQICKRINDHCKKMRRCSK 155

[Close]
BLAST of CSPI01G12620 vs. TrEMBL
Match: A0A0A0LSG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.8e-93
Identity = 173/186 (93.01%), Postives = 176/186 (94.62%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR-----LLSSLD 180
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR      L+ LD
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180

Query: 181 ACYYLL 182
             +Y +
Sbjct: 181 FTFYFV 186

[Close]
BLAST of CSPI01G12620 vs. TrEMBL
Match: W9REK1_9ROSA (DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 7.9e-62
Identity = 111/159 (69.81%), Postives = 138/159 (86.79%), Query Frame = 1 

Query: 2   NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61
           +R Q + ++FTKQP++EDVGPR+IKSMQFT  S +EISK+AEVQV+KG YYD  RKP++ 
Sbjct: 4   SRDQAQNILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKPVED 63

Query: 62  GLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCS 121
           GLLDPRMGPANK  +CATCH  F DCPGHYGY+ LALPV+NVGY +TIL+ILKCICKSCS
Sbjct: 64  GLLDPRMGPANKFSECATCHGRFSDCPGHYGYLKLALPVYNVGYLSTILDILKCICKSCS 123

Query: 122 RILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCST 161
           RILL+EKL KDFL+KMR+ K+E L+K +L+KKI+KKC++
Sbjct: 124 RILLDEKLRKDFLKKMRSSKMEPLKKGELMKKIVKKCNS 162

[Close]
BLAST of CSPI01G12620 vs. TrEMBL
Match: A0A061FU60_THECC (DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.8e-61
Identity = 108/153 (70.59%), Postives = 135/153 (88.24%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGPRKIKS+QF+  S +EI+K AEVQVY+ LYYD   +PI+GGLLDPRMGP
Sbjct: 5   FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130
           ANK  KCATCH NF DCPGHYGY++LALPV+NVGY +TIL+ILKCICKSCSRI+L+EKL 
Sbjct: 65  ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 131 KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTT 164
           KD+L++MR+PK++AL+K D++K I+KKCS + +
Sbjct: 125 KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMAS 157

[Close]
BLAST of CSPI01G12620 vs. TrEMBL
Match: V4SLI9_9ROSI (DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.4e-60
Identity = 113/172 (65.70%), Postives = 134/172 (77.91%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           + + FTKQPYIEDVGPRKI+S+QF+  S +EI K AEVQVYKG YY + R PI+GGLLDP
Sbjct: 10  QSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDP 69

Query: 67  RM---------------GPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILE 126
           RM               GPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+
Sbjct: 70  RMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILD 129

Query: 127 ILKCICKSCSRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTT 164
           ILKCICK CSR+LLEEKL KD+L+KMRNPK+EALRK DL+K I+KKCST+ +
Sbjct: 130 ILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS 181

[Close]
BLAST of CSPI01G12620 vs. TrEMBL
Match: A0A0B0MY34_GOSAR (DNA-directed RNA polymerase subunit OS=Gossypium arboreum GN=F383_02816 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.7e-59
Identity = 105/158 (66.46%), Postives = 134/158 (84.81%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           + +VFTK+PYIEDVGPR+IKS++F+ FS +EI+K AEVQVYKG+YYD   +PI+GGLLDP
Sbjct: 6   QDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDPQSRPIEGGLLDP 65

Query: 67  RMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 126
           RMGP NK  KCATC  +FGDCPGHYGY+ L LPV+NVGY +TIL+ILKCICKSCSRILL+
Sbjct: 66  RMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSRILLD 125

Query: 127 EKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTG 165
           +KL KD+L+KMR PK E L+K +++K ++KKC+ +  G
Sbjct: 126 DKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGG 163

[Close]
BLAST of CSPI01G12620 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-50
Identity = 94/163 (57.67%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 11  FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70
           FTK+PYIEDVGP KIKS+ F+  S  E+ K AEVQV+    YD + KP + GLLDPRMGP
Sbjct: 9   FTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGP 68

Query: 71  ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICK----------SC 130
            NK   C TC  NF +CPGHYGY+ L LPV+NVGYF  IL+ILKCICK           C
Sbjct: 69  PNKKSICTTCEGNFQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRC 128

Query: 131 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTT 164
           S +LL+EKL++D LRKMRNP++E L+K +L K ++KKCST+ +
Sbjct: 129 SNMLLDEKLYEDHLRKMRNPRMEPLKKTELAKAVVKKCSTMAS 171

[Close]
BLAST of CSPI01G12620 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 101.3 bits (251), Expect = 7.2e-22
Identity = 56/143 (39.16%), Postives = 87/143 (60.84%), Query Frame = 1 

Query: 24  KIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRK--PIDGGLLDPRMGPANKGCKCATCH 83
           K++ +QF   S  EI +++ + V    + +TT K  P  GGL D R+G  ++  KC TC 
Sbjct: 14  KVRVVQFGILSPDEIRQMSVIHVE---HSETTEKGKPKVGGLSDTRLGTIDRKVKCETCM 73

Query: 84  ANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILL--EEKLFKDFLRKMRN 143
           AN  +CPGH+GY+ LA P+++VG+  T+L I++C+C +CS+IL   EE  FK  + K++N
Sbjct: 74  ANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHKFKQAM-KIKN 133

Query: 144 PKLEALRKVDLVKKIIKKCSTLT 163
           PK       + +KKI+  C   T
Sbjct: 134 PK-------NRLKKILDACKNKT 145

[Close]
BLAST of CSPI01G12620 vs. NCBI nr
Match: gi|700209632|gb|KGN64728.1| (hypothetical protein Csa_1G084270 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 2.5e-93
Identity = 173/186 (93.01%), Postives = 176/186 (94.62%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR-----LLSSLD 180
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR      L+ LD
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGLD 180

Query: 181 ACYYLL 182
             +Y +
Sbjct: 181 FTFYFV 186

[Close]
BLAST of CSPI01G12620 vs. NCBI nr
Match: gi|449462093|ref|XP_004148776.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 5.6e-93
Identity = 174/194 (89.69%), Postives = 177/194 (91.24%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRLLSSLDACYYL 180
           SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR       C YL
Sbjct: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTR----CSRCGYL 180

Query: 181 LPKLFKTRELISTL 195
              + K   ++  L
Sbjct: 181 NGSVKKAVSMLGIL 190

[Close]
BLAST of CSPI01G12620 vs. NCBI nr
Match: gi|659130677|ref|XP_008465290.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cucumis melo])

HSP 1 Score: 342.4 bits (877), Expect = 5.3e-91
Identity = 169/194 (87.11%), Postives = 176/194 (90.72%), Query Frame = 1 

Query: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60
           MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID
Sbjct: 1   MNRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPID 60

Query: 61  GGLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSC 120
           GGLLDPRMGPANKGCKC+TCHANFGDCPGHYGYVNL+LPVFNVGYFTTILEILKCICKSC
Sbjct: 61  GGLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSC 120

Query: 121 SRILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRLLSSLDACYYL 180
           SRILLEEKL+KDFLRKMRNPKLEALRK DLVKKIIKKCSTLTTGNKST+       C YL
Sbjct: 121 SRILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTK----CSRCGYL 180

Query: 181 LPKLFKTRELISTL 195
              + K   ++  L
Sbjct: 181 NGSVKKAVSMLGIL 190

[Close]
BLAST of CSPI01G12620 vs. NCBI nr
Match: gi|568870032|ref|XP_006488216.1| (PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis])

HSP 1 Score: 249.2 bits (635), Expect = 6.0e-63
Identity = 113/157 (71.97%), Postives = 134/157 (85.35%), Query Frame = 1 

Query: 7   EGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
           + + FTKQPYIEDVGPRKI+S+QF+  S +EI K AEVQVYKG YY + R PI+GGLLDP
Sbjct: 10  QSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGLLDP 69

Query: 67  RMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLE 126
           RMGPANK C CATCH  F +CPGHYGY+ LALPV+NVGY +TIL+ILKCICK CSR+LLE
Sbjct: 70  RMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRLLLE 129

Query: 127 EKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTT 164
           EKL KD+L+KMRNPK+EALRK DL+K I+KKCST+ +
Sbjct: 130 EKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMAS 166

[Close]
BLAST of CSPI01G12620 vs. NCBI nr
Match: gi|703086395|ref|XP_010092992.1| (DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis])

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 111/159 (69.81%), Postives = 138/159 (86.79%), Query Frame = 1 

Query: 2   NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61
           +R Q + ++FTKQP++EDVGPR+IKSMQFT  S +EISK+AEVQV+KG YYD  RKP++ 
Sbjct: 4   SRDQAQNILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKPVED 63

Query: 62  GLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCS 121
           GLLDPRMGPANK  +CATCH  F DCPGHYGY+ LALPV+NVGY +TIL+ILKCICKSCS
Sbjct: 64  GLLDPRMGPANKFSECATCHGRFSDCPGHYGYLKLALPVYNVGYLSTILDILKCICKSCS 123

Query: 122 RILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCST 161
           RILL+EKL KDFL+KMR+ K+E L+K +L+KKI+KKC++
Sbjct: 124 RILLDEKLRKDFLKKMRSSKMEPLKKGELMKKIVKKCNS 162

The following BLAST results are available for this feature:
BLAST of CSPI01G12620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPC1_ARATH1.4e-5161.44DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 ... [more]
RPC1_DEBHA3.6e-3142.36DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii (strain AT... [more]
RPC1_YEAST3.7e-2842.45DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces cerevisiae (strain... [more]
RPC1_DICDI6.3e-2844.37DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr... [more]
RPC1_SCHPO2.7e-2641.72DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces pombe (strai... [more]
BLAST of CSPI01G12620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSG9_CUCSA1.8e-9393.01Uncharacterized protein OS=Cucumis sativus GN=Csa_1G084270 PE=4 SV=1[more]
W9REK1_9ROSA7.9e-6269.81DNA-directed RNA polymerase III subunit RPC1 OS=Morus notabilis GN=L484_007173 P... [more]
A0A061FU60_THECC8.8e-6170.59DNA-directed RNA polymerase subunit OS=Theobroma cacao GN=TCM_012066 PE=3 SV=1[more]
V4SLI9_9ROSI4.4e-6065.70DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE... [more]
A0A0B0MY34_GOSAR3.7e-5966.46DNA-directed RNA polymerase subunit OS=Gossypium arboreum GN=F383_02816 PE=3 SV=... [more]
BLAST of CSPI01G12620 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60040.22.1e-5057.67 nuclear RNA polymerase C1[more]
AT4G35800.17.2e-2239.16 RNA polymerase II large subunit[more]
BLAST of CSPI01G12620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209632|gb|KGN64728.1|2.5e-9393.01hypothetical protein Csa_1G084270 [Cucumis sativus][more]
gi|449462093|ref|XP_004148776.1|5.6e-9389.69PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus][more]
gi|659130677|ref|XP_008465290.1|5.3e-9187.11PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cu... [more]
gi|568870032|ref|XP_006488216.1|6.0e-6371.97PREDICTED: DNA-directed RNA polymerase III subunit 1 [Citrus sinensis][more]
gi|703086395|ref|XP_010092992.1|1.1e-6169.81DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007080RNA_pol_Rpb1_1
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12620.1CSPI01G12620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007080RNA polymerase Rpb1, domain 1PFAMPF04997RNA_pol_Rpb1_1coord: 23..164
score: 6.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 12..158
score: 1.3
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 23..165
score: 8.93