Csa1G066540 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G066540
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6974000 .. 6974350 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

mRNA sequence

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Coding sequence (CDS)

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Protein sequence

MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSRSLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN*
Homology
[Close]
BLAST of Csa1G066540 vs. TrEMBL
Match: A0A0A0LRQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066540 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.0e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

[Close]
BLAST of Csa1G066540 vs. NCBI nr
Match: gi|700209489|gb|KGN64585.1| (hypothetical protein Csa_1G066540 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.3e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

The following BLAST results are available for this feature:
BLAST of Csa1G066540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRQ4_CUCSA3.0e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066540 PE=4 SV=1[more]
BLAST of Csa1G066540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209489|gb|KGN64585.1|4.3e-61100.00hypothetical protein Csa_1G066540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103875cucumber EST collection version 3.0transcribed_cluster
CU126674cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G066540.1Csa1G066540.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103875CU103875transcribed_cluster
CU126674CU126674transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G066540CSPI01G11300Wild cucumber (PI 183967)cpicuB000
Csa1G066540CsGy1G011230Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G066540Melon (DHL92) v3.6.1cumedB022
Csa1G066540Melon (DHL92) v3.6.1cumedB077
Csa1G066540Silver-seed gourdcarcuB0661
Csa1G066540Silver-seed gourdcarcuB0814
Csa1G066540Silver-seed gourdcarcuB0888
Csa1G066540Silver-seed gourdcarcuB0916
Csa1G066540Silver-seed gourdcarcuB0945
Csa1G066540Silver-seed gourdcarcuB1020
Csa1G066540Watermelon (97103) v2cuwmbB000
Csa1G066540Watermelon (97103) v2cuwmbB029
Csa1G066540Watermelon (97103) v2cuwmbB032
Csa1G066540Wax gourdcuwgoB023
Csa1G066540Wax gourdcuwgoB044
Csa1G066540Wax gourdcuwgoB051
Csa1G066540Cucumber (Chinese Long) v2cucuB035
Csa1G066540Cucumber (Chinese Long) v2cucuB044
Csa1G066540Cucumber (Gy14) v1cgycuB015
Csa1G066540Cucumber (Gy14) v1cgycuB087
Csa1G066540Cucurbita maxima (Rimu)cmacuB010
Csa1G066540Cucurbita maxima (Rimu)cmacuB218
Csa1G066540Cucurbita maxima (Rimu)cmacuB318
Csa1G066540Cucurbita maxima (Rimu)cmacuB391
Csa1G066540Cucurbita maxima (Rimu)cmacuB649
Csa1G066540Cucurbita maxima (Rimu)cmacuB848
Csa1G066540Cucurbita moschata (Rifu)cmocuB000
Csa1G066540Cucurbita moschata (Rifu)cmocuB203
Csa1G066540Cucurbita moschata (Rifu)cmocuB380
Csa1G066540Cucurbita moschata (Rifu)cmocuB419
Csa1G066540Cucurbita moschata (Rifu)cmocuB491
Csa1G066540Cucurbita moschata (Rifu)cmocuB637
Csa1G066540Cucurbita moschata (Rifu)cmocuB835
Csa1G066540Melon (DHL92) v3.5.1cumeB027
Csa1G066540Melon (DHL92) v3.5.1cumeB040
Csa1G066540Melon (DHL92) v3.5.1cumeB083
Csa1G066540Watermelon (Charleston Gray)cuwcgB012
Csa1G066540Watermelon (Charleston Gray)cuwcgB032
Csa1G066540Watermelon (Charleston Gray)cuwcgB035
Csa1G066540Watermelon (97103) v1cuwmB008
Csa1G066540Watermelon (97103) v1cuwmB043
Csa1G066540Watermelon (97103) v1cuwmB067
Csa1G066540Cucurbita pepo (Zucchini)cpecuB029
Csa1G066540Cucurbita pepo (Zucchini)cpecuB474
Csa1G066540Cucurbita pepo (Zucchini)cpecuB506
Csa1G066540Cucurbita pepo (Zucchini)cpecuB770
Csa1G066540Bottle gourd (USVL1VR-Ls)culsiB012
Csa1G066540Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G066540Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G066540Bottle gourd (USVL1VR-Ls)culsiB050
Csa1G066540Cucumber (Gy14) v2cgybcuB239