CU103875 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU103875
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Eukaryotic translation initiation factor 4B
Location	Chr1 : 6973374 .. 6974199 (-)
Sequence length	643

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGAGCGAGGGAGCGAGCGAGCGAGAGAGAGAGAGGGCAGTGAGAAGAAGAGAAGGAAAAGGGGAAAAGTCCCGGCTGGCCTGGAGTTGAATCCAACACACAGAGAGAGATACGCAAAATTAGTGCTCAAGCAATAACACCCATTCATCTCTAGCGATTTGCGGGCTTTCTCTTCCTCCTCCTCTTCCTCCTCCTTCATATATTTTTATCTTTTCTCTCAATTCAACAATTTCTACCACTAATTATTAGGGTTCCCATTGGATTCCCAGCCATGTCGAAGAAGAAACTCACTGGTAATACTATGACCCTCAAGGACTTCCATGGCGGCTCTATCCCTACTGATCTTCCTCTCCCCTCTGCTCCTGGCCTAACGGTTAGACCTTCGGATCGGACTAGTTTCGATCGTCCTACATCGTGGGGGAACCCAATGAACAGGTCGGACCATCGGTCTAGGCCTCATTCATCACCGGCAACCAGGCATTTTGATGACAAAACGCCATTTCTTGCTTCTGCTGCACACATTGGTCGGAATTTCGATGAGGATGAAAGGAAGCCTTTAGGTGGTGTAACTCCTCCGCGGCGAACTATTAGCTACGAGAGCATTAGGGTTCTGCCTAGTCGTAACTCTGAGTTGAAGCCCGAAT

Library


Library category	ESTs
fruit (8DPP) library	6
gynoecious flower library	2
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU103875 vs. TrEMBL
Match: A0A0A0LUC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066530 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.1e-56
Identity = 111/124 (89.52%), Postives = 111/124 (89.52%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMN      
Sbjct: 1   MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNRSDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTIS ESIRVLPSRNSE
Sbjct: 61  RPHSSPATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISDESIRVLPSRNSE 120

Query: 391 LKPE 450
           LKPE
Sbjct: 121 LKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. TrEMBL
Match: M5WFQ1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002910mg PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKK++GNTMTLKDFHGGSIP+DLPLPSAPG+ VRP+DR+++DRPTSWGNPM       
Sbjct: 1   MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVVVRPTDRSTYDRPTSWGNPMGRPDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFL  + HIGRNFDEDERKPL GV+ PRRTIS +SIRVLP+ ++E
Sbjct: 61  RPHTSPATRHFDDKTPFLTHSVHIGRNFDEDERKPLDGVSTPRRTISDDSIRVLPT-HAE 120

Query: 391 LKP 450
            KP
Sbjct: 121 PKP 122

Query: 451  510
           
Sbjct: 181  122

Query: 511  570
           
Sbjct: 241  122

Query: 571  630
           
Sbjct: 301  122

Query: 631  640
           
Sbjct: 361  122

[Close]

BLAST of CU103875 vs. TrEMBL
Match: A0A0D2NNN3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 87/125 (69.60%), Postives = 97/125 (77.60%), Query Frame = 1


Query: 271 MSKKK-LTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXX 330
           MSKKK  +GNTMTLKDFHGGSIPTDLPLPSAPG+ VRPSDR+ +DR TSWGNPM      
Sbjct: 1   MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVIVRPSDRSGYDRGTSWGNPMGRPDHR 60

Query: 331 XXXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNS 390
                  ATRHFD+KTPFL ++ HIGRNFDEDER PL GV+ PRRTIS ES R  P+R+ 
Sbjct: 61  ARPNSSPATRHFDNKTPFLTNSVHIGRNFDEDERTPLDGVSAPRRTISDESFRA-PARHL 120

Query: 391 ELKPE 450
           ELKPE
Sbjct: 121 ELKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. TrEMBL
Match: A0A0D2STY5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 87/125 (69.60%), Postives = 97/125 (77.60%), Query Frame = 1


Query: 271 MSKKK-LTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXX 330
           MSKKK  +GNTMTLKDFHGGSIPTDLPLPSAPG+ VRPSDR+ +DR TSWGNPM      
Sbjct: 1   MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVIVRPSDRSGYDRGTSWGNPMGRPDHR 60

Query: 331 XXXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNS 390
                  ATRHFD+KTPFL ++ HIGRNFDEDER PL GV+ PRRTIS ES R  P+R+ 
Sbjct: 61  ARPNSSPATRHFDNKTPFLTNSVHIGRNFDEDERTPLDGVSAPRRTISDESFRA-PARHL 120

Query: 391 ELKPE 450
           ELKPE
Sbjct: 121 ELKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. TrEMBL
Match: A0A0D2STZ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.1e-40
Identity = 87/125 (69.60%), Postives = 97/125 (77.60%), Query Frame = 1


Query: 271 MSKKK-LTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXX 330
           MSKKK  +GNTMTLKDFHGGSIPTDLPLPSAPG+ VRPSDR+ +DR TSWGNPM      
Sbjct: 1   MSKKKAFSGNTMTLKDFHGGSIPTDLPLPSAPGVIVRPSDRSGYDRGTSWGNPMGRPDHR 60

Query: 331 XXXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNS 390
                  ATRHFD+KTPFL ++ HIGRNFDEDER PL GV+ PRRTIS ES R  P+R+ 
Sbjct: 61  ARPNSSPATRHFDNKTPFLTNSVHIGRNFDEDERTPLDGVSAPRRTISDESFRA-PARHL 120

Query: 391 ELKPE 450
           ELKPE
Sbjct: 121 ELKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. NCBI nr
Match: gi|449473345|ref|XP_004153855.1| (PREDICTED: uncharacterized protein LOC101208164 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 4.5e-56
Identity = 111/124 (89.52%), Postives = 111/124 (89.52%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMN      
Sbjct: 1   MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNRSDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTIS ESIRVLPSRNSE
Sbjct: 61  RPHSSPATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISDESIRVLPSRNSE 120

Query: 391 LKPE 450
           LKPE
Sbjct: 121 LKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. NCBI nr
Match: gi|659067863|ref|XP_008441653.1| (PREDICTED: uncharacterized protein LOC103485732 [Cucumis melo])

HSP 1 Score: 221.5 bits (563), Expect = 1.4e-54
Identity = 109/124 (87.90%), Postives = 109/124 (87.90%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGN MN      
Sbjct: 1   MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNSMNRSDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFLA AAHIGRNFDEDERKPLGGVTPPRRTIS ESIRVLPSRNSE
Sbjct: 61  RPHSSPATRHFDDKTPFLAPAAHIGRNFDEDERKPLGGVTPPRRTISDESIRVLPSRNSE 120

Query: 391 LKPE 450
           LKPE
Sbjct: 121 LKPE 124

Query: 451  510
           
Sbjct: 181  124

Query: 511  570
           
Sbjct: 241  124

Query: 571  630
           
Sbjct: 301  124

Query: 631  643
           
Sbjct: 361  124

[Close]

BLAST of CU103875 vs. NCBI nr
Match: gi|645236743|ref|XP_008224884.1| (PREDICTED: uncharacterized protein LOC103324593 [Prunus mume])

HSP 1 Score: 184.9 bits (468), Expect = 1.5e-43
Identity = 89/123 (72.36%), Postives = 102/123 (82.93%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKK++GNTMTLKDFHGGSIP+DLPLPSAPG+ VRP+DR+++DRPTSWGNPM       
Sbjct: 1   MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVVVRPTDRSTYDRPTSWGNPMGRPDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFLA + HIGRNFDEDERKPL GV+ PRRTIS +SIRVLP+R +E
Sbjct: 61  RPHTSPATRHFDDKTPFLAHSVHIGRNFDEDERKPLDGVSTPRRTISDDSIRVLPTR-AE 120

Query: 391 LKP 450
            KP
Sbjct: 121 PKP 122

Query: 451  510
           
Sbjct: 181  122

Query: 511  570
           
Sbjct: 241  122

Query: 571  630
           
Sbjct: 301  122

Query: 631  640
           
Sbjct: 361  122

[Close]

BLAST of CU103875 vs. NCBI nr
Match: gi|595862164|ref|XP_007211345.1| (hypothetical protein PRUPE_ppa002910mg [Prunus persica])

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-42
Identity = 87/123 (70.73%), Postives = 101/123 (82.11%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKK++GNTMTLKDFHGGSIP+DLPLPSAPG+ VRP+DR+++DRPTSWGNPM       
Sbjct: 1   MSKKKVSGNTMTLKDFHGGSIPSDLPLPSAPGVVVRPTDRSTYDRPTSWGNPMGRPDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRHFDDKTPFL  + HIGRNFDEDERKPL GV+ PRRTIS +SIRVLP+ ++E
Sbjct: 61  RPHTSPATRHFDDKTPFLTHSVHIGRNFDEDERKPLDGVSTPRRTISDDSIRVLPT-HAE 120

Query: 391 LKP 450
            KP
Sbjct: 121 PKP 122

Query: 451  510
           
Sbjct: 181  122

Query: 511  570
           
Sbjct: 241  122

Query: 571  630
           
Sbjct: 301  122

Query: 631  640
           
Sbjct: 361  122

[Close]

BLAST of CU103875 vs. NCBI nr
Match: gi|1009108705|ref|XP_015886133.1| (PREDICTED: uncharacterized protein LOC107421413 [Ziziphus jujuba])

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 86/124 (69.35%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 271 MSKKKLTGNTMTLKDFHGGSIPTDLPLPSAPGLTVRPSDRTSFDRPTSWGNPMNXXXXXX 330
           MSKKK++GNTMTLKDFHGGSIPTDLPLPSAPG+ +RPSDR++FDR  SW NP        
Sbjct: 1   MSKKKVSGNTMTLKDFHGGSIPTDLPLPSAPGVVIRPSDRSTFDRSNSWVNPTGRSDHRS 60

Query: 331 XXXXXXATRHFDDKTPFLASAAHIGRNFDEDERKPLGGVTPPRRTISYESIRVLPSRNSE 390
                 ATRH DDK PFL+  AHIGRNFDEDERKPL GV+ PRRTIS ESIRV P+R +E
Sbjct: 61  RPHTSPATRHLDDKAPFLSDTAHIGRNFDEDERKPLDGVSAPRRTISDESIRVNPAR-AE 120

Query: 391 LKPE 450
           LK E
Sbjct: 121 LKQE 123

Query: 451  510
           
Sbjct: 181  123

Query: 511  570
           
Sbjct: 241  123

Query: 571  630
           
Sbjct: 301  123

Query: 631  643
           
Sbjct: 361  123

The following BLAST results are available for this feature:

BLAST of CU103875 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUC6_CUCSA	4.1e-56	89.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066530 PE=4 SV=1	[more]
M5WFQ1_PRUPE	1.1e-42	70.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002910mg PE=4 SV=1	[more]
A0A0D2NNN3_GOSRA	3.1e-40	69.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1	[more]
A0A0D2STY5_GOSRA	3.1e-40	69.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1	[more]
A0A0D2STZ0_GOSRA	3.1e-40	69.60	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G084700 PE=4 SV=1	[more]

BLAST of CU103875 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449473345\|ref\|XP_004153855.1\|	4.5e-56	89.52	PREDICTED: uncharacterized protein LOC101208164 [Cucumis sativus]	[more]
gi\|659067863\|ref\|XP_008441653.1\|	1.4e-54	87.90	PREDICTED: uncharacterized protein LOC103485732 [Cucumis melo]	[more]
gi\|645236743\|ref\|XP_008224884.1\|	1.5e-43	72.36	PREDICTED: uncharacterized protein LOC103324593 [Prunus mume]	[more]
gi\|595862164\|ref\|XP_007211345.1\|	1.3e-42	70.73	hypothetical protein PRUPE_ppa002910mg [Prunus persica]	[more]
gi\|1009108705\|ref\|XP_015886133.1\|	3.4e-40	69.35	PREDICTED: uncharacterized protein LOC107421413 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G066530	Csa1G066530	gene
Csa1G066540	Csa1G066540	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LHXS5	FKNP3UI02LHXS5	EST
FKNP3UI02M2FWS	FKNP3UI02M2FWS	EST
FKNP3UI02MAH2L	FKNP3UI02MAH2L	EST
FKNP3UI02MX36P	FKNP3UI02MX36P	EST
FKNP3UI02N90J5	FKNP3UI02N90J5	EST
FKNP3UI02NCNRF	FKNP3UI02NCNRF	EST
G0093566	G0093566	EST
G0128341	G0128341	EST
H0003919	H0003919	EST
H0126536	H0126536	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32091	FAMILY NOT NAMED	coord: 1..124 score: 4.9
None	No IPR available	PANTHER	PTHR32091:SF4	SUBFAMILY NOT NAMED	coord: 1..124 score: 4.9