Csa1G066540.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G066540.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 6974000 .. 6974350 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

mRNA sequence

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Coding sequence (CDS)

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Protein sequence

MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSRSLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN*
Homology
[Close]
BLAST of Csa1G066540.1 vs. TrEMBL
Match: A0A0A0LRQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066540 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.0e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

[Close]
BLAST of Csa1G066540.1 vs. NCBI nr
Match: gi|700209489|gb|KGN64585.1| (hypothetical protein Csa_1G066540 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 4.3e-61
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

The following BLAST results are available for this feature:
BLAST of Csa1G066540.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRQ4_CUCSA3.0e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G066540 PE=4 SV=1[more]
BLAST of Csa1G066540.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209489|gb|KGN64585.1|4.3e-61100.00hypothetical protein Csa_1G066540 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G066540Csa1G066540gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G066540.1Csa1G066540.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G066540.1.cds1Csa1G066540.1.cds1CDS