CsGy1G011230 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G011230
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 7000902 .. 7001252 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

mRNA sequence

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Coding sequence (CDS)

ATGAAGGAGGAGGAAGAGGAGGAGGAAGAGAAAGCCCGCAAATCGCTAGAGATGAATGGGTGTTATTGCTTGAGCACTAATTTTGCGTATCTCTCTCTGTGTGTTGGATTCAACTCCAGGCCAGCCGGGACTTTTCCCCCTTTTCCTTCTCTTCTTCTCACTGCCCTCTCTCTCTCTCGCTCGCTCGCTCCCTCGCTCGCGGACCAGAACAAACACACCATCACCTTCCTTCTTTTCGTGCGTTCGCCGCCTCCTAAACACACTTTTGGACCCTCCCATAATAAACCTCGGCCCAATAAGAATCCCCTACTCCTCAATTCTTTTCTTAGGCCCAAGCCCAAGACCAACTAA

Protein sequence

MKEEEEEEEEKARKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSRSLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN

Homology

[Close]

BLAST of CsGy1G011230 vs. NCBI nr
Match: KGN64585.1 (hypothetical protein Csa_1G066540 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 8.3e-53
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

[Close]

BLAST of CsGy1G011230 vs. TrEMBL
Match: tr|A0A0A0LRQ4|A0A0A0LRQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066540 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 5.5e-53
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60
           MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR
Sbjct: 1   MKEXXXXXXXXXXKSLEMNGCYCLSTNFAYLSLCVGFNSRPAGTFPPFPSLLLTALSLSR 60

Query: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 117
           SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN
Sbjct: 61  SLAPSLADQNKHTITFLLFVRSPPPKHTFGPSHNKPRPNKNPLLLNSFLRPKPKTN 116

The following BLAST results are available for this feature:

BLAST of CsGy1G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64585.1	8.3e-53	100.00	hypothetical protein Csa_1G066540 [Cucumis sativus]	[more]

BLAST of CsGy1G011230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRQ4\|A0A0A0LRQ4_CUCSA	5.5e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G066540 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G011230.1	CsGy1G011230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G011230	Csa1G066540	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G011230	CSPI01G11300	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G011230	CsaV3_1G011390	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB003
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB101
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB116
CsGy1G011230	Cucurbita moschata (Rifu)	cgybcmoB133
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB023
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB066
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB102
CsGy1G011230	Cucurbita pepo (Zucchini)	cgybcpeB140
CsGy1G011230	Cucumber (Chinese Long) v2	cgybcuB039
CsGy1G011230	Bottle gourd (USVL1VR-Ls)	cgyblsiB015
CsGy1G011230	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G011230	Bottle gourd (USVL1VR-Ls)	cgyblsiB026
CsGy1G011230	Bottle gourd (USVL1VR-Ls)	cgyblsiB046
CsGy1G011230	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G011230	Melon (DHL92) v3.5.1	cgybmeB076
CsGy1G011230	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G011230	Melon (DHL92) v3.6.1	cgybmedB072
CsGy1G011230	Watermelon (Charleston Gray)	cgybwcgB013
CsGy1G011230	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G011230	Watermelon (97103) v1	cgybwmB010
CsGy1G011230	Watermelon (97103) v1	cgybwmB044
CsGy1G011230	Wild cucumber (PI 183967)	cgybcpiB037
CsGy1G011230	Silver-seed gourd	carcgybB0637
CsGy1G011230	Silver-seed gourd	carcgybB0788
CsGy1G011230	Silver-seed gourd	carcgybB0889
CsGy1G011230	Silver-seed gourd	carcgybB0919
CsGy1G011230	Silver-seed gourd	carcgybB0992
CsGy1G011230	Cucumber (Chinese Long) v3	cgybcucB045
CsGy1G011230	Watermelon (97103) v2	cgybwmbB002
CsGy1G011230	Watermelon (97103) v2	cgybwmbB016
CsGy1G011230	Watermelon (97103) v2	cgybwmbB032
CsGy1G011230	Wax gourd	cgybwgoB020
CsGy1G011230	Wax gourd	cgybwgoB043
CsGy1G011230	Wax gourd	cgybwgoB048
CsGy1G011230	Cucumber (Gy14) v2	cgybcgybB035
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB002
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB084
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB086
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB108
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB126
CsGy1G011230	Cucurbita maxima (Rimu)	cgybcmaB142