Csa1G050110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRING finger protein; contains IPR013083 (Zinc finger, RING/FYVE/PHD-type)
LocationChr1 : 5738879 .. 5741232 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAACAATATTCAAATTCTTCTTCTATTTGATCATATTCATCCGTGTGGCGCTTTGGCATTGCATTGACAACAACAATTTCAAACAGAGAGGATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAATGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTGTGAGCTTCTCTTTATCTGAATTTTCTTTTATACATTTTTCTATTCTGAGTTCTTTATGGTTGATTGGTTGATGCCATGTCTTTTGGGCTCTTTCTAAAACTTGGTTATAGCATCTTCTGTTGTGGGATTTTGTAACCCATTGCAAAATTTAACACGTTGAAAATTTATTTTTTGAGTTATTGGTGTGAATTGTTTGTTCATGTCCTTTGAAGTTAATGAAAATGCGACTGGTTAGAGTTACCAAGGTTTGCCTTTATAGCGTTCTGGTTTTGGTTCCATACTTGGTGGGTTTGTGCTTTTGAAGAGGAGAAAGGATGCTAAGATTCTCTATACTTTTGATGATGCTTTAAAGAAAGTTATTTGTATCTGTATGAAATGTTATTGCTCAAAAAGAAGACTAAAATAATCGTTTAAAACTTTTTGCGGGTACCCTTCAAATTTTCAGTTACTTCCATCTTAAAATCTCAATAAATTATGATCCCCACAGACGACTTTGGAGTAAGTGAAGCCTCCCTGGAGTTAGTTAGATGGGCTATGAGCATAATGCAAGTAGTTGAGTTCTCGATAACAAAAAAGTTGATCAAAGACAAAAGTCAACAGTTGCTCCCTTCAGTTTCTCAATTGTTCTAGTATAGTTGCATTTGCTGTCATTATAATTAGTTCTGGAGTTTATTTGTAAATTCAAGATATGTTGTGCTCTATCAACTAAAAATGGTAGTTTAAATATGGGAATGAAGCAATTATTTTATATTGAAATATCATTATTATGATGCAGTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGAGCAAATTGACTAAAAATACTAAAAGTATTTGATATATAAATTAAATTTACGATAATCCACCTGCTTAAGCCCTTTTTACATTTACTCCTCCAATAAGTTTCAAACTCACAAGTAACAGGGTGTTAGAGTATTTGGTTTAATTAAATTTGCCATAATCCAACAAGTATTTTAGGTTAATCAGTGATTTAAGAAGAAAAATGAAAAAAAGGTAATAGAAGAGAGACGAATAATTGAAGTTTGATGATTCGTGTTAATCAACAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTGTATGCGATCTATCTCTCTTGCTCCTCTATTTATCTTTGTTGTTTTAAAGTTTTCCGAAGGTGGTGATATGTCAAGCAAAAGATTAAAATGTGTCTTCGTTCTCTGCCACGATTCATACATCAGTTGAAAACAATCATCTTCATGTACAATTCTCTTCTGGAAAAGAGTTGTGGCGAACGGTTAAAAATGTGCTTTTGTATTGAACGGCTAAACCAACAAGAACTTCAGTTCTTTCTTACTTCACCGTTTAAAATGATATTAATACTCTTTAACATGAATGCAGCTGTTATATTACCATCCCTACGACGGCTTTGTGATTATGCATCACAGATAGAGAGCATTGAAGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGTATTACTATTGAAAGCTTTACTCTTATATCCATATCTTTGACCCAGTAGATTCTTAATGGCTGAATGTACTATTAGAAAAAAAAAAAAAAACTATAATGCTCCTTTCCCTCATCTATTACAGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTATTGTAACAAACCAAACGATTAGAATAATGTACATTGGAGGACTTTGCTAATTATC

mRNA sequence

ATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAATGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTCTGTTATATTACCATCCCTACGACGGCTTTGTGATTATGCATCACAGATAGAGAGCATTGAAGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTATTGTAA

Coding sequence (CDS)

ATGTTGGATTGTTATCAGAGGCTTTCTTCTGGCCATTCTTACAATGATTTCCTTGAGTTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTCTGTTATATTACCATCCCTACGACGGCTTTGTGATTATGCATCACAGATAGAGAGCATTGAAGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTATTGTAA

Protein sequence

MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL*
Homology
[Close]
BLAST of Csa1G050110 vs. TrEMBL
Match: A0A0A0LU99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 6.3e-149
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 

Query: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60
           MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL
Sbjct: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60

Query: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120
           LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY
Sbjct: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120

Query: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180
           ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC
Sbjct: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180

Query: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240
           YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT
Sbjct: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240

Query: 241 PDVLFLMDYEHLL 254
           PDVLFLMDYEHLL
Sbjct: 241 PDVLFLMDYEHLL 253

[Close]
BLAST of Csa1G050110 vs. TrEMBL
Match: B9I3L5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2)

HSP 1 Score: 316.2 bits (809), Expect = 3.5e-83
Identity = 152/251 (60.56%), Postives = 187/251 (74.50%), Query Frame = 1 

Query: 5   YQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWV 64
           Y  L++  SY D L+ LEADI+HAN  AAS PR K GS  QMKLV NHL P+ L+LLQW+
Sbjct: 4   YLELAAMSSYKDSLKVLEADIQHANVLAASIPRAKSGSCLQMKLVYNHLAPIFLFLLQWM 63

Query: 65  DCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQ- 124
           DC C+ L  +YFNLFHIV+YKV    +P ISS GRKATI +FY+VILPSL+RL     + 
Sbjct: 64  DCSCTCLLSTYFNLFHIVVYKVCSDRKPKISSCGRKATIRQFYAVILPSLQRLHGDTKEP 123

Query: 125 -IESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYH 184
            +   E     M +  RLE +R+  D+++ REDECGIC E  TK+V+P CCHAMC NCYH
Sbjct: 124 DVTQEEGHFLEMIVKNRLEDRRKRSDVDLLREDECGICLEPCTKMVVPSCCHAMCINCYH 183

Query: 185 DWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 244
           +W ++SESCPFCRGSLKRV S DLWVLTC +DVVD  T++KED+LRFYL++NNLP+D PD
Sbjct: 184 EWNTRSESCPFCRGSLKRVNSEDLWVLTCSSDVVDTNTVLKEDILRFYLYINNLPKDIPD 243

Query: 245 VLFLMDYEHLL 254
            LFLM YEHL+
Sbjct: 244 DLFLMYYEHLI 254

[Close]
BLAST of Csa1G050110 vs. TrEMBL
Match: A0A0K9QXH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135440 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 3.0e-82
Identity = 146/251 (58.17%), Postives = 191/251 (76.10%), Query Frame = 1 

Query: 5   YQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWV 64
           YQ + S  + N+ L+ +EADI+HAN  AAS PR K G+  QMKLV N L P+ILYLLQW+
Sbjct: 4   YQLVKSS-TCNESLKVIEADIQHANILAASIPRNKSGNWLQMKLVHNDLAPLILYLLQWI 63

Query: 65  DCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQI 124
           DC C+ L  S  NLF++++YKV+  GRPDISSYGR+AT+ EFY+VILP L+RL    S++
Sbjct: 64  DCSCTCLLPSCLNLFYVIIYKVNSDGRPDISSYGRRATLREFYAVILPYLQRLHGNLSEL 123

Query: 125 ESIEDLHKG--MAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYH 184
           + + ++     +A+ K  +  R+  D++ +REDECGIC E  TK+VLP CCH+MC NCY 
Sbjct: 124 DDVVNVSNSSELAVRKIAQESRKLSDIDFDREDECGICLEPCTKMVLPNCCHSMCINCYR 183

Query: 185 DWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 244
           DW  +SESCPFCRGS+KRV SGDLWVLTCG DVVDP+T+MKED+LR YL++N+LP+D PD
Sbjct: 184 DWNLRSESCPFCRGSIKRVQSGDLWVLTCGTDVVDPKTVMKEDILRLYLYINSLPKDVPD 243

Query: 245 VLFLMDYEHLL 254
            LFLM YE+L+
Sbjct: 244 ALFLMYYEYLI 253

[Close]
BLAST of Csa1G050110 vs. TrEMBL
Match: A0A061G5P6_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_014560 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.1e-82
Identity = 152/251 (60.56%), Postives = 184/251 (73.31%), Query Frame = 1 

Query: 5   YQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWV 64
           Y  LS+  SY D+L+ LEAD++HAN  AAS PR K G+  QMKLV NHL P+ L  LQW+
Sbjct: 3   YFELSASSSYQDYLKVLEADVQHANMLAASIPRAKGGACLQMKLVYNHLAPIFLVFLQWL 62

Query: 65  DCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQI 124
           DC CS L  SY NLFHIV+Y+V   GRP ISS  RKATI EFY VILPSL+RL    S++
Sbjct: 63  DCSCSCLLSSYVNLFHIVVYQVCSDGRPSISSCRRKATIREFYCVILPSLQRLHGDLSEL 122

Query: 125 ESI--EDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYH 184
           +    ED    M + K+L+ KR+  D+E+EREDECGIC E   KIVLP CCHAMC NCY 
Sbjct: 123 DVTPGEDHCFEMVVRKKLDDKRKVTDMELEREDECGICLEPCNKIVLPNCCHAMCINCYR 182

Query: 185 DWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 244
           DW  +SESCPFCRGSLKRV SGDLWVLT   +VV+ +T++KEDMLR +L++N LP+D PD
Sbjct: 183 DWSIRSESCPFCRGSLKRVTSGDLWVLTRSTEVVETQTVLKEDMLRLHLYINRLPKDMPD 242

Query: 245 VLFLMDYEHLL 254
            LFLM YE+L+
Sbjct: 243 ALFLMYYEYLI 253

[Close]
BLAST of Csa1G050110 vs. TrEMBL
Match: A0A166E784_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007025 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.1e-81
Identity = 148/243 (60.91%), Postives = 187/243 (76.95%), Query Frame = 1 

Query: 12  HSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFL 71
           +S  D L+ LEADI+HAN+ AAS PR K GS  QMKLV NHL P++L+LLQW+DC C+ L
Sbjct: 11  YSCGDSLKVLEADIQHANSLAASIPRGKGGSHLQMKLVYNHLAPLLLFLLQWIDCSCTCL 70

Query: 72  PLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLH 131
             +Y NLFH+++YKV   G+P IS  GRKATI +FY+VILPSLRRL +   ++ +I+D  
Sbjct: 71  LPNYLNLFHVLVYKVQRDGKPKISGRGRKATIKDFYAVILPSLRRLHNDL-ELTNIKDEK 130

Query: 132 KGMAI--SKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSE 191
             + I   K+LE +  F ++++EREDECGIC E  TKIVLP CCHAMC NCY DW ++SE
Sbjct: 131 PELGIISKKKLEAETSFSNIDLEREDECGICLEPCTKIVLPNCCHAMCINCYRDWNARSE 190

Query: 192 SCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDY 251
           SCPFCRGS+KRV SGDLWVLTCGNDV+D  T+ KED+LRFYL++N+LP+D PD LF M Y
Sbjct: 191 SCPFCRGSIKRVRSGDLWVLTCGNDVIDNDTVSKEDLLRFYLYINSLPKDIPDGLFFMYY 250

Query: 252 EHL 253
           E+L
Sbjct: 251 EYL 252

[Close]
BLAST of Csa1G050110 vs. TAIR10
Match: AT1G24440.1 (AT1G24440.1 RING/U-box superfamily protein)

HSP 1 Score: 269.2 bits (687), Expect = 2.5e-72
Identity = 137/245 (55.92%), Postives = 167/245 (68.16%), Query Frame = 1 

Query: 13  SYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLP 72
           SY D L+ LEADI HAN  AA  P  K G   QMKLVC++L P  ++LLQW+D  C  LP
Sbjct: 9   SYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSC-LLP 68

Query: 73  LSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRL-CDYASQIESIEDLH 132
             YF+ FHI++YKV   GR + S YGRKATI EFY VILPSL RL  ++A   +      
Sbjct: 69  -RYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 128

Query: 133 KGMAISKR---LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKS 192
              AI+K+   +E  R    +++EREDECGIC E  TK+VLP CCHAMC  CY +W +KS
Sbjct: 129 NPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS 188

Query: 193 ESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMD 252
           ESCPFCRGS+KRV S DLWVLTC  DVVDP T+ KED+LRFYL +N+LP+D P+  FL+ 
Sbjct: 189 ESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVY 248

Query: 253 YEHLL 254
            E+L+
Sbjct: 249 NEYLI 251

[Close]
BLAST of Csa1G050110 vs. TAIR10
Match: AT1G13195.1 (AT1G13195.1 RING/U-box superfamily protein)

HSP 1 Score: 253.1 bits (645), Expect = 1.9e-67
Identity = 121/246 (49.19%), Postives = 169/246 (68.70%), Query Frame = 1 

Query: 9   SSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFC 68
           SS  SY + L+ LEAD++HAN+ A + P  K+    QMKLV ++   ++L+LL+W+D   
Sbjct: 11  SSSSSYYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSS 70

Query: 69  SFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIE 128
           S L   Y NLFH+++YKV   G+P ++++GRKATISEFY VILPSL+ L     ++E+ +
Sbjct: 71  SCLIPRYLNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTD 130

Query: 129 DLHKGMAISKRLEHKRE---FLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWK 188
                  +SK++  +     F +  +ERE+ECGIC E+ TK+VLP CCH+MC  CY +W 
Sbjct: 131 IGFDLKRLSKKITKEARSSRFSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWN 190

Query: 189 SKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLF 248
            KS+SCPFCRGS+KRV S DLWVL   NDVVD RT  +ED+ RFYL++N+LP+D P+ LF
Sbjct: 191 LKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALF 250

Query: 249 LMDYEH 252
           ++ YE+
Sbjct: 251 VVYYEY 256

[Close]
BLAST of Csa1G050110 vs. TAIR10
Match: AT5G58787.1 (AT5G58787.1 RING/U-box superfamily protein)

HSP 1 Score: 195.3 bits (495), Expect = 4.6e-50
Identity = 96/233 (41.20%), Postives = 140/233 (60.09%), Query Frame = 1 

Query: 13  SYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLP 72
           S+ D L+ LEADI+HAN  A  +PR KDG+  QM+L  +      L+L+QW DC  +   
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLA--- 64

Query: 73  LSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHK 132
             +  L  +++Y     G+  +S Y RKA+I EF +VILPSL +L    + I+  +   +
Sbjct: 65  -GFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQ-KE 124

Query: 133 GMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCP 192
              +  R + + E  ++EIERE+ECGIC E  +K+VLP C H++C  CY DW+ +S+SCP
Sbjct: 125 VCKMRYRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCP 184

Query: 193 FCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLF 246
           FCR SLKRV SGDLW+    ND V+   I +E+  R ++++  LP   PD ++
Sbjct: 185 FCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 232

[Close]
BLAST of Csa1G050110 vs. TAIR10
Match: AT5G01520.1 (AT5G01520.1 RING/U-box superfamily protein)

HSP 1 Score: 191.8 bits (486), Expect = 5.1e-49
Identity = 97/235 (41.28%), Postives = 138/235 (58.72%), Query Frame = 1 

Query: 13  SYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLP 72
           S+ D L+ LEADI+ AN  A+ +P   DG   QM+L  +    + L+LLQW DC  +   
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA--- 63

Query: 73  LSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHK 132
                L  I++YK    G+  +S + RK +I EFY V+ PSL +L      I  +E+  +
Sbjct: 64  -GALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQL---HGGITDVEERKQ 123

Query: 133 GMAISKRLEHKR-----EFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSK 192
                KR   K      +  ++++ERE+ECGIC E R K+VLP C H+MC NCY +W+++
Sbjct: 124 KEICDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRAR 183

Query: 193 SESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 243
           S+SCPFCRGSLKRV SGDLW+ TC  ++ D   I KE++ R  ++++ LP  T D
Sbjct: 184 SQSCPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSD 231

[Close]
BLAST of Csa1G050110 vs. TAIR10
Match: AT3G47160.2 (AT3G47160.2 RING/U-box superfamily protein)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-45
Identity = 97/250 (38.80%), Postives = 136/250 (54.40%), Query Frame = 1 

Query: 13  SYNDFLEFLEADIRHANAF------------AASFPRVKDGSSFQMKLVCNHLTPVILYL 72
           S+ D L+ LEADI+HAN              A  +PR KDG+  QM+L        +L+L
Sbjct: 5   SFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLFL 64

Query: 73  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 132
           +QW DC  +        L  +++Y     G+  +S Y RK +I +FY+VI PSL +L   
Sbjct: 65  VQWTDCHLA----GTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQL--- 124

Query: 133 ASQIESIEDLHKGMAISKRLEHKRE-----FLDLEIEREDECGICFESRTKIVLPYCCHA 192
              I  ++D  +      R  +K E       +++IERE+ECGIC E    +VLP C H+
Sbjct: 125 ERGITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHS 184

Query: 193 MCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNN 246
           +C  CY DW  +SESCPFCR SLKRV SGDLW+L   +D V+  TI +E+  R ++++  
Sbjct: 185 LCIKCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEK 244

[Close]
BLAST of Csa1G050110 vs. NCBI nr
Match: gi|778658002|ref|XP_011651953.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus])

HSP 1 Score: 534.6 bits (1376), Expect = 9.1e-149
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1 

Query: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60
           MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL
Sbjct: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60

Query: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120
           LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY
Sbjct: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120

Query: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180
           ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC
Sbjct: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180

Query: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240
           YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT
Sbjct: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240

Query: 241 PDVLFLMDYEHLL 254
           PDVLFLMDYEHLL
Sbjct: 241 PDVLFLMDYEHLL 253

[Close]
BLAST of Csa1G050110 vs. NCBI nr
Match: gi|659067407|ref|XP_008439294.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo])

HSP 1 Score: 504.2 bits (1297), Expect = 1.3e-139
Identity = 238/253 (94.07%), Postives = 245/253 (96.84%), Query Frame = 1 

Query: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60
           MLDCYQRL SGHSYNDFLEFLEADIRHANAFAASFPRVKD SSF+MKLVCNHLTPVILYL
Sbjct: 1   MLDCYQRLFSGHSYNDFLEFLEADIRHANAFAASFPRVKDDSSFRMKLVCNHLTPVILYL 60

Query: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120
           LQWVDC CSFL LSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSL+RLCDY
Sbjct: 61  LQWVDCSCSFLSLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDY 120

Query: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180
           ASQ+ESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLP CCHAMCTNC
Sbjct: 121 ASQVESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNC 180

Query: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240
           YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDV+D  T++KEDMLRFYLF+NNLPEDT
Sbjct: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVIDTCTVIKEDMLRFYLFINNLPEDT 240

Query: 241 PDVLFLMDYEHLL 254
           PDVLFLM YEHLL
Sbjct: 241 PDVLFLMYYEHLL 253

[Close]
BLAST of Csa1G050110 vs. NCBI nr
Match: gi|645268169|ref|XP_008239405.1| (PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume])

HSP 1 Score: 327.0 bits (837), Expect = 2.9e-86
Identity = 156/253 (61.66%), Postives = 196/253 (77.47%), Query Frame = 1 

Query: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60
           MLD Y++L++   YND L+ LEADI+HAN  AAS PR K G+  QMKLV NHL P+ L+L
Sbjct: 1   MLDYYEQLAAS-PYNDSLKVLEADIQHANMLAASIPRRKSGTVLQMKLVYNHLAPIFLFL 60

Query: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120
           LQW+DC  S L  SY NLFHI++YKV   GR +ISS GRKAT+SEFY+VILPSL+RL   
Sbjct: 61  LQWIDCSSSCLLSSYLNLFHIIVYKVRTDGRSNISSCGRKATVSEFYNVILPSLQRLHGD 120

Query: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180
           + +++  ++    MA+ KR E   +  D ++ERE+ECGIC E  TK+VLP CCHAMC NC
Sbjct: 121 SLEMDITQEEALEMAVRKRYEDNIKLSDADLERENECGICLEPCTKMVLPNCCHAMCINC 180

Query: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240
           Y DW ++SESCPFCRGS+KRV SGDLWVLTCG+DVVD +T++KEDMLRFYLF+N+LP+D 
Sbjct: 181 YRDWNTRSESCPFCRGSIKRVNSGDLWVLTCGSDVVDTQTVLKEDMLRFYLFINSLPKDL 240

Query: 241 PDVLFLMDYEHLL 254
           PD LFLM YE+L+
Sbjct: 241 PDALFLMYYEYLI 252

[Close]
BLAST of Csa1G050110 vs. NCBI nr
Match: gi|470126433|ref|XP_004299189.1| (PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 324.3 bits (830), Expect = 1.9e-85
Identity = 153/252 (60.71%), Postives = 191/252 (75.79%), Query Frame = 1 

Query: 2   LDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLL 61
           +D Y++L++  SY D L+ LEADI+HAN  AAS PR K G+  QMKLV N L P+ L+LL
Sbjct: 1   MDYYEQLAARPSYQDSLKVLEADIQHANMLAASIPRSKGGTFLQMKLVYNQLAPIFLFLL 60

Query: 62  QWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYA 121
           QW+DC  S L  SY NLF IV+YKV   GR DISSYGRKAT S+FY+VILPSL+RL   +
Sbjct: 61  QWIDCSSSCLLASYLNLFDIVIYKVHSDGRADISSYGRKATTSQFYNVILPSLQRLHGDS 120

Query: 122 SQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCY 181
             ++  ++    M + KR E K +  D+++ERE ECGIC E  TK+VLP CCHAMC NCY
Sbjct: 121 LDVDITQEEDLKMIVKKRYEDKIKLSDVDLEREKECGICLEPCTKMVLPNCCHAMCINCY 180

Query: 182 HDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTP 241
            DW ++SESCPFCRGS+KRV SGDLWVLTCG+D VD +T++KEDMLRFYLF+N+LP+D P
Sbjct: 181 RDWNTRSESCPFCRGSIKRVYSGDLWVLTCGSDAVDTQTVLKEDMLRFYLFINSLPKDVP 240

Query: 242 DVLFLMDYEHLL 254
           D LFLM YE+L+
Sbjct: 241 DALFLMYYEYLI 252

[Close]
BLAST of Csa1G050110 vs. NCBI nr
Match: gi|658050604|ref|XP_008361019.1| (PREDICTED: RING-H2 finger protein ATL47-like [Malus domestica])

HSP 1 Score: 322.8 bits (826), Expect = 5.4e-85
Identity = 154/253 (60.87%), Postives = 194/253 (76.68%), Query Frame = 1 

Query: 1   MLDCYQRLSSGHSYNDFLEFLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYL 60
           MLD Y++L+S  SY+D L+ +EADI+HAN  AAS PR K G+  QMKLV N L  + L+L
Sbjct: 1   MLDYYEQLASRPSYHDXLKVVEADIQHANMLAASIPRSKGGTVLQMKLVYNDLAHIFLFL 60

Query: 61  LQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDY 120
           LQW+DC  S L  SY NLFH+++YKV   GR +ISS GRKATISEFY+VILPSL+RL   
Sbjct: 61  LQWIDCSSSCLLSSYLNLFHVIVYKVHSDGRSNISSCGRKATISEFYNVILPSLQRLHGD 120

Query: 121 ASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNC 180
           + +I+  ++    MA  KR   K + LD+++EREDECGIC    TK+VLP CCHAMC NC
Sbjct: 121 SLEIDLTQEESLEMAARKRYNDKIKLLDVDLEREDECGICLVPCTKMVLPNCCHAMCINC 180

Query: 181 YHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDT 240
           Y +W ++SESCPFCRGS+KRV SGDLWVLTCG+DVVD +T++KED+LRFYLF+N LP+D 
Sbjct: 181 YREWNTRSESCPFCRGSIKRVNSGDLWVLTCGSDVVDTQTVLKEDILRFYLFINRLPKDL 240

Query: 241 PDVLFLMDYEHLL 254
           PD LFLM YE+L+
Sbjct: 241 PDALFLMYYEYLI 253

The following BLAST results are available for this feature:
BLAST of Csa1G050110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU99_CUCSA6.3e-149100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1[more]
B9I3L5_POPTR3.5e-8360.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2[more]
A0A0K9QXH3_SPIOL3.0e-8258.17Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135440 PE=4 SV=1[more]
A0A061G5P6_THECC5.1e-8260.56RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_014560 PE=4 SV=1[more]
A0A166E784_DAUCA1.1e-8160.91Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007025 PE=4 SV=1[more]
BLAST of Csa1G050110 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24440.12.5e-7255.92 RING/U-box superfamily protein[more]
AT1G13195.11.9e-6749.19 RING/U-box superfamily protein[more]
AT5G58787.14.6e-5041.20 RING/U-box superfamily protein[more]
AT5G01520.15.1e-4941.28 RING/U-box superfamily protein[more]
AT3G47160.22.6e-4538.80 RING/U-box superfamily protein[more]
BLAST of Csa1G050110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778658002|ref|XP_011651953.1|9.1e-149100.00PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus][more]
gi|659067407|ref|XP_008439294.1|1.3e-13994.07PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo][more]
gi|645268169|ref|XP_008239405.1|2.9e-8661.66PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume][more]
gi|470126433|ref|XP_004299189.1|1.9e-8560.71PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca][more]
gi|658050604|ref|XP_008361019.1|5.4e-8560.87PREDICTED: RING-H2 finger protein ATL47-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050110.1Csa1G050110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 157..194
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 157..195
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 149..200
score: 6.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 172..181
scor
NoneNo IPR availablePANTHERPTHR15315RING FINGER PROTEIN 41, 151coord: 40..253
score: 5.9E
NoneNo IPR availablePANTHERPTHR15315:SF32SUBFAMILY NOT NAMEDcoord: 40..253
score: 5.9E
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 154..200
score: 1.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 146..200
score: 6.68

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G050110Cla002585Watermelon (97103) v1cuwmB008
Csa1G050110ClCG08G017470Watermelon (Charleston Gray)cuwcgB089
Csa1G050110ClCG03G003460Watermelon (Charleston Gray)cuwcgB035
Csa1G050110Lsi08G016220Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G050110Lsi02G004690Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G050110Cla97C08G161160Watermelon (97103) v2cuwmbB087
Csa1G050110Cla97C03G054540Watermelon (97103) v2cuwmbB032
Csa1G050110CSPI01G09170Wild cucumber (PI 183967)cpicuB000
Csa1G050110Cucsa.391730Cucumber (Gy14) v1cgycuB547
Csa1G050110CsGy1G009190Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G050110Csa2G350270Cucumber (Chinese Long) v2cucuB007
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G050110Melon (DHL92) v3.5.1cumeB027
Csa1G050110Cucurbita pepo (Zucchini)cpecuB029
Csa1G050110Cucurbita pepo (Zucchini)cpecuB359
Csa1G050110Cucurbita pepo (Zucchini)cpecuB515
Csa1G050110Melon (DHL92) v3.6.1cumedB022
Csa1G050110Silver-seed gourdcarcuB0393
Csa1G050110Silver-seed gourdcarcuB0523
Csa1G050110Silver-seed gourdcarcuB1017
Csa1G050110Wax gourdcuwgoB030
Csa1G050110Cucumber (Gy14) v1cgycuB225
Csa1G050110Cucurbita maxima (Rimu)cmacuB071
Csa1G050110Cucurbita maxima (Rimu)cmacuB204
Csa1G050110Cucurbita maxima (Rimu)cmacuB390
Csa1G050110Cucurbita moschata (Rifu)cmocuB061
Csa1G050110Cucurbita moschata (Rifu)cmocuB189
Csa1G050110Cucurbita moschata (Rifu)cmocuB380