Cucsa.391730 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.391730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING finger protein
Location	scaffold04062 : 143893 .. 146043 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTGTGAGCTTCTCTTTATCTGAATTTTCTTTTATACATTTTTCTATTCTGAGTTCTTTATGGTTGATTGGTTGATGCCATGTCTTTTGGGCTCTTTCTAAAACTTGGTTATAGCATCTTCTGTTGTGGGATTTTGTAACCCATTGCAAAATTTAACACGTTGTAAATTTATTTTTTGAGTTATTGGTGTGAATTGTTTGTTCATGTCCTTTGAAGTTAATGAAAATGCGACTGGTTAGAGTTACCAAGGTTTGCCTTTATAGCGTTCTGGTTTTGGTTCCATACTTGGTGGGTTTGTGCTTTTGAAGAGGAGAAAGGATGCTAAGATTCTCTATACTCTTGATGATGCTTTAAAGAAAGTTATTTGTATCTGTATGAAATGTTATTGCTCAAAAAGAAGACTAAAATAATCGTTTAAAACTTTTTGCGGGTACCCTTCAAATTTTCAGTTACTTCCATCTTAAAATCTCAATAAATTATGATCCCCACAGACGACTTTGGAGTAAGTGAAGCCTCCCTGGAGTTAGTTAGATGGGCTATGAGCATAATGCAAGTAGTTGAGTTCTCGATAACAAAAAAGTTGATCAAAGACAAAAGTCAACAGTTGCTCCCTTCAGTTTCTCAATTGTTCTAGTATAGTTGCATTTGCTGTCATTATAATTAGTTCTGGAGTTTATTTGTAAATTCAAGATATGTTGTGCTCTATCAACTAAAAATGGTAGTTTAAATATGGGAATGAAGCAATTATTTTATATTGAAATATCATTATTATGATGCAGTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGAGCAAATTGACTAAAAATACTAAAAGTATTTGATATATAAATTAAATTTACGATAATCCACCTGCTTAAGCCCTTTTTACATTTACTCCTCCAATAAGTTTCAAACTCACAAGTAACAGGGTGTTAGAGTATTTGGTTTAATTAAATTTGCCATAATCCAACAAGTATTTTAGGTTAATCAGTGATTTAAGAAGAAAAATGAAAAAAAGGTAATAGAAGAGAGACGAATAATTGAAGTTTGATGATTCGTGTTAATCAACAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTGTATGCAATCTATCTCTCTTGCTCCTCTATTTATCTTTGTTGTTTTAAAGTTTTCCGAAGGTGGTGATATGTCAAGCAAAAGATTAAAATGTGTCTTCGTTCTCTGCCACGATTCATACATCAGATGAAAACAATCATCTTCATGTACAATTCTCTTCTGGAAAAGAGTTGTGGCGAACGGTTAAAAATGTGCTTTTGTATTAAACGGCTAAACCAACAAGAACTTCAGTTCTTTCTTACTTCACCGTTTAAAATGATATTAATACTCTTTAACATGAATGCAGCTGTTATATTACCATCCCTACGACGGCTTTGTGATTATGCATCACAGATAGAGAGCATTGAAGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGTATTACTATTGAAAGCTTTACTCTTATATCCATATCTTTGACCCAGTAGATTCTTAATGGCTGAATGTACTATTAGGAAAAAAAAAAAACTATAATGCTCCTTTCCCTCATCTATTACAGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTGTTGTAA

mRNA sequence

TTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTGTATGCAATCTATCTCTCTTGCTCCTCTATTTATCTTTGTTGTTTTAAAGTTTTCCGAAGGTGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTGTTGTAA

Coding sequence (CDS)

TTTCTTGAAGCTGATATTCGCCATGCCAATGCTTTTGCAGCTTCATTTCCAAGAGTTAAGGATGGTTCATCCTTCCAGATGAAATTAGTTTGTAACCATTTGACACCAGTTATTCTTTACTTGCTTCAATGGGTGGATTGCTTCTGTTCCTTTCTACCTTTGAGCTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTCATGGAAGGCCAGATATCTCATCATACGGAAGGAAAGCAACTATAAGCGAATTCTACTGTATGCAATCTATCTCTCTTGCTCCTCTATTTATCTTTGTTGTTTTAAAGTTTTCCGAAGGTGATCTCCACAAGGGAATGGCGATCTCAAAAAGATTAGAACACAAGAGGGAATTTTTAGATTTGGAGATAGAAAGAGAAGATGAATGTGGGATCTGTTTCGAGTCGCGTACCAAAATTGTCTTGCCATATTGTTGCCATGCCATGTGCACAAATTGCTACCACGATTGGAAATCAAAGTCAGAATCTTGCCCATTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGTGGTAACGACGTGGTTGACCCCCGTACTATTATGAAAGAAGATATGTTACGCTTCTACCTTTTTGTAAACAACCTACCTGAAGATACTCCTGATGTTCTATTCTTAATGGACTATGAACACTTGTTGTAA

Protein sequence

FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL*

Homology

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BLAST of Cucsa.391730 vs. TrEMBL
Match: A0A0A0LU99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.5e-123
Identity = 217/234 (92.74%), Postives = 219/234 (93.59%), Query Frame = 1


Query: 1   FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF 60
           FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF
Sbjct: 20  FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF 79

Query: 61  HIVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKR 120
           HIVLYKVDFHGRPDISSYGRKATISEFY +   SL  L  +     S  DLHKGMAISKR
Sbjct: 80  HIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKR 139

Query: 121 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 180
           LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK
Sbjct: 140 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 199

Query: 181 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL
Sbjct: 200 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

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BLAST of Cucsa.391730 vs. TrEMBL
Match: A0A166E784_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007025 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.5e-75
Identity = 138/233 (59.23%), Postives = 172/233 (73.82%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN+ AAS PR K GS  QMKLV NHL P++L+LLQW+DC C+ L  +Y NLFH
Sbjct: 20  LEADIQHANSLAASIPRGKGGSHLQMKLVYNHLAPLLLFLLQWIDCSCTCLLPNYLNLFH 79

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVL-KFSEGDLHKGMAISKR 121
           +++YKV   G+P IS  GRKATI +FY +   SL  L   + L    +     G+   K+
Sbjct: 80  VLVYKVQRDGKPKISGRGRKATIKDFYAVILPSLRRLHNDLELTNIKDEKPELGIISKKK 139

Query: 122 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 181
           LE +  F ++++EREDECGIC E  TKIVLP CCHAMC NCY DW ++SESCPFCRGS+K
Sbjct: 140 LEAETSFSNIDLEREDECGICLEPCTKIVLPNCCHAMCINCYRDWNARSESCPFCRGSIK 199

Query: 182 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHL 234
           RV SGDLWVLTCGNDV+D  T+ KED+LRFYL++N+LP+D PD LF M YE+L
Sbjct: 200 RVRSGDLWVLTCGNDVIDNDTVSKEDLLRFYLYINSLPKDIPDGLFFMYYEYL 252

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BLAST of Cucsa.391730 vs. TrEMBL
Match: B9I3L5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2)

HSP 1 Score: 289.3 bits (739), Expect = 4.3e-75
Identity = 142/236 (60.17%), Postives = 173/236 (73.31%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN  AAS PR K GS  QMKLV NHL P+ L+LLQW+DC C+ L  +YFNLFH
Sbjct: 20  LEADIQHANVLAASIPRAKSGSCLQMKLVYNHLAPIFLFLLQWMDCSCTCLLSTYFNLFH 79

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVV---LKFSEGDLHKGMAIS 121
           IV+YKV    +P ISS GRKATI +FY +   SL  L        +   EG   + M + 
Sbjct: 80  IVVYKVCSDRKPKISSCGRKATIRQFYAVILPSLQRLHGDTKEPDVTQEEGHFLE-MIVK 139

Query: 122 KRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGS 181
            RLE +R+  D+++ REDECGIC E  TK+V+P CCHAMC NCYH+W ++SESCPFCRGS
Sbjct: 140 NRLEDRRKRSDVDLLREDECGICLEPCTKMVVPSCCHAMCINCYHEWNTRSESCPFCRGS 199

Query: 182 LKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           LKRV S DLWVLTC +DVVD  T++KED+LRFYL++NNLP+D PD LFLM YEHL+
Sbjct: 200 LKRVNSEDLWVLTCSSDVVDTNTVLKEDILRFYLYINNLPKDIPDDLFLMYYEHLI 254

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BLAST of Cucsa.391730 vs. TrEMBL
Match: A0A0K9QXH3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135440 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 137/239 (57.32%), Postives = 173/239 (72.38%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           +EADI+HAN  AAS PR K G+  QMKLV N L P+ILYLLQW+DC C+ L  S  NLF+
Sbjct: 19  IEADIQHANILAASIPRNKSGNWLQMKLVHNDLAPLILYLLQWIDCSCTCLLPSCLNLFY 78

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGD------LHKGM 121
           +++YKV+  GRPDISSYGR+AT+ EFY +    + P    +    SE D          +
Sbjct: 79  VIIYKVNSDGRPDISSYGRRATLREFYAV----ILPYLQRLHGNLSELDDVVNVSNSSEL 138

Query: 122 AISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFC 181
           A+ K  +  R+  D++ +REDECGIC E  TK+VLP CCH+MC NCY DW  +SESCPFC
Sbjct: 139 AVRKIAQESRKLSDIDFDREDECGICLEPCTKMVLPNCCHSMCINCYRDWNLRSESCPFC 198

Query: 182 RGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           RGS+KRV SGDLWVLTCG DVVDP+T+MKED+LR YL++N+LP+D PD LFLM YE+L+
Sbjct: 199 RGSIKRVQSGDLWVLTCGTDVVDPKTVMKEDILRLYLYINSLPKDVPDALFLMYYEYLI 253

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BLAST of Cucsa.391730 vs. TrEMBL
Match: A0A061G5P6_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_014560 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 6.2e-74
Identity = 142/239 (59.41%), Postives = 169/239 (70.71%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEAD++HAN  AAS PR K G+  QMKLV NHL P+ L  LQW+DC CS L  SY NLFH
Sbjct: 19  LEADVQHANMLAASIPRAKGGACLQMKLVYNHLAPIFLVFLQWLDCSCSCLLSSYVNLFH 78

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKG------M 121
           IV+Y+V   GRP ISS  RKATI EFYC+   SL  L        SE D+  G      M
Sbjct: 79  IVVYQVCSDGRPSISSCRRKATIREFYCVILPSLQRLHG----DLSELDVTPGEDHCFEM 138

Query: 122 AISKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFC 181
            + K+L+ KR+  D+E+EREDECGIC E   KIVLP CCHAMC NCY DW  +SESCPFC
Sbjct: 139 VVRKKLDDKRKVTDMELEREDECGICLEPCNKIVLPNCCHAMCINCYRDWSIRSESCPFC 198

Query: 182 RGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           RGSLKRV SGDLWVLT   +VV+ +T++KEDMLR +L++N LP+D PD LFLM YE+L+
Sbjct: 199 RGSLKRVTSGDLWVLTRSTEVVETQTVLKEDMLRLHLYINRLPKDMPDALFLMYYEYLI 253

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BLAST of Cucsa.391730 vs. TAIR10
Match: AT1G24440.1 (AT1G24440.1 RING/U-box superfamily protein)

HSP 1 Score: 248.4 bits (633), Expect = 4.3e-66
Identity = 130/237 (54.85%), Postives = 159/237 (67.09%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI HAN  AA  P  K G   QMKLVC++L P  ++LLQW+D  C  LP  YF+ FH
Sbjct: 17  LEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSC-LLP-RYFDFFH 76

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFI-FVVLKFSEGDLHKGMAISKR 121
           I++YKV   GR + S YGRKATI EFY +   SL  L I F  L           AI+K+
Sbjct: 77  ILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYPNPKAITKK 136

Query: 122 ---LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRG 181
              +E  R    +++EREDECGIC E  TK+VLP CCHAMC  CY +W +KSESCPFCRG
Sbjct: 137 QYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKSESCPFCRG 196

Query: 182 SLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           S+KRV S DLWVLTC  DVVDP T+ KED+LRFYL +N+LP+D P+  FL+  E+L+
Sbjct: 197 SIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVYNEYLI 251

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BLAST of Cucsa.391730 vs. TAIR10
Match: AT1G13195.1 (AT1G13195.1 RING/U-box superfamily protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-59
Identity = 114/235 (48.51%), Postives = 159/235 (67.66%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEAD++HAN+ A + P  K+    QMKLV ++   ++L+LL+W+D   S L   Y NLFH
Sbjct: 23  LEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLNLFH 82

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFY--CMQSISLAPLFIFVVLKFSEG-DLHK-GMAI 121
           +++YKV   G+P ++++GRKATISEFY   + S+ L    +  +     G DL +    I
Sbjct: 83  VLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLSKKI 142

Query: 122 SKRLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRG 181
           +K     R F +  +ERE+ECGIC E+ TK+VLP CCH+MC  CY +W  KS+SCPFCRG
Sbjct: 143 TKEARSSR-FSNAGLEREEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRG 202

Query: 182 SLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEH 233
           S+KRV S DLWVL   NDVVD RT  +ED+ RFYL++N+LP+D P+ LF++ YE+
Sbjct: 203 SMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 256

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BLAST of Cucsa.391730 vs. TAIR10
Match: AT5G58787.1 (AT5G58787.1 RING/U-box superfamily protein)

HSP 1 Score: 177.6 bits (449), Expect = 9.2e-45
Identity = 89/225 (39.56%), Postives = 131/225 (58.22%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN  A  +PR KDG+  QM+L  +      L+L+QW DC  +     +  L  
Sbjct: 13  LEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLA----GFLGLLR 72

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKRL 121
           +++Y     G+  +S Y RKA+I EF  +   SL+ L   V     +    +   +  R 
Sbjct: 73  VLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVT-DIDDSKQKEVCKMRYRK 132

Query: 122 EHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKR 181
           + + E  ++EIERE+ECGIC E  +K+VLP C H++C  CY DW+ +S+SCPFCR SLKR
Sbjct: 133 KDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFCRDSLKR 192

Query: 182 VASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLF 227
           V SGDLW+    ND V+   I +E+  R ++++  LP   PD ++
Sbjct: 193 VDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 232

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BLAST of Cucsa.391730 vs. TAIR10
Match: AT5G01520.1 (AT5G01520.1 RING/U-box superfamily protein)

HSP 1 Score: 176.0 bits (445), Expect = 2.7e-44
Identity = 91/224 (40.62%), Postives = 132/224 (58.93%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+ AN  A+ +P   DG   QM+L  +    + L+LLQW DC  +        L  
Sbjct: 12  LEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA----GALGLLR 71

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLF--IFVVLKFSEGDLHKGMAISK 121
           I++YK    G+  +S + RK +I EFY +   SL  L   I  V +  + ++       K
Sbjct: 72  ILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEICDKRYRKK 131

Query: 122 RLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSL 181
               K +  ++++ERE+ECGIC E R K+VLP C H+MC NCY +W+++S+SCPFCRGSL
Sbjct: 132 DRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSCPFCRGSL 191

Query: 182 KRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 224
           KRV SGDLW+ TC  ++ D   I KE++ R  ++++ LP  T D
Sbjct: 192 KRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSD 231

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BLAST of Cucsa.391730 vs. TAIR10
Match: AT3G47160.2 (AT3G47160.2 RING/U-box superfamily protein)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-40
Identity = 90/243 (37.04%), Postives = 131/243 (53.91%), Query Frame = 1


Query: 2   LEADIRHANAF------------AASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFC 61
           LEADI+HAN              A  +PR KDG+  QM+L        +L+L+QW DC  
Sbjct: 13  LEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTDCHL 72

Query: 62  SFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEG 121
           +        L  +++Y     G+  +S Y RK +I +FY +    + P  + +    ++ 
Sbjct: 73  A----GTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAV----IFPSLLQLERGITDL 132

Query: 122 DLHKGMAISK-RLEHKRE-----FLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYH 181
           D  K   + K R  +K E       +++IERE+ECGIC E    +VLP C H++C  CY 
Sbjct: 133 DDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYR 192

Query: 182 DWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPD 227
           DW  +SESCPFCR SLKRV SGDLW+L   +D V+  TI +E+  R ++++  LP   PD
Sbjct: 193 DWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPD 247

[Close]

BLAST of Cucsa.391730 vs. NCBI nr
Match: gi|778658002|ref|XP_011651953.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 2.1e-123
Identity = 217/234 (92.74%), Postives = 219/234 (93.59%), Query Frame = 1


Query: 1   FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF 60
           FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF
Sbjct: 20  FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF 79

Query: 61  HIVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKR 120
           HIVLYKVDFHGRPDISSYGRKATISEFY +   SL  L  +     S  DLHKGMAISKR
Sbjct: 80  HIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLRRLCDYASQIESIEDLHKGMAISKR 139

Query: 121 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 180
           LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK
Sbjct: 140 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 199

Query: 181 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL
Sbjct: 200 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

[Close]

BLAST of Cucsa.391730 vs. NCBI nr
Match: gi|659067407|ref|XP_008439294.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo])

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-115
Identity = 205/234 (87.61%), Postives = 212/234 (90.60%), Query Frame = 1


Query: 1   FLEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLF 60
           FLEADIRHANAFAASFPRVKD SSF+MKLVCNHLTPVILYLLQWVDC CSFL LSYFNLF
Sbjct: 20  FLEADIRHANAFAASFPRVKDDSSFRMKLVCNHLTPVILYLLQWVDCSCSFLSLSYFNLF 79

Query: 61  HIVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKR 120
           HIVLYKVDFHGRPDISSYGRKATISEFY +   SL  L  +     S  DLHKGMAISKR
Sbjct: 80  HIVLYKVDFHGRPDISSYGRKATISEFYSVILPSLQRLCDYASQVESIEDLHKGMAISKR 139

Query: 121 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 180
           LEHKREFLDLEIEREDECGICFESRTKIVLP CCHAMCTNCYHDWKSKSESCPFCRGSLK
Sbjct: 140 LEHKREFLDLEIEREDECGICFESRTKIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLK 199

Query: 181 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           RVASGDLWVLTCGNDV+D  T++KEDMLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 200 RVASGDLWVLTCGNDVIDTCTVIKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of Cucsa.391730 vs. NCBI nr
Match: gi|645268169|ref|XP_008239405.1| (PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume])

HSP 1 Score: 291.2 bits (744), Expect = 1.6e-75
Identity = 142/233 (60.94%), Postives = 172/233 (73.82%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN  AAS PR K G+  QMKLV NHL P+ L+LLQW+DC  S L  SY NLFH
Sbjct: 20  LEADIQHANMLAASIPRRKSGTVLQMKLVYNHLAPIFLFLLQWIDCSSSCLLSSYLNLFH 79

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVLKFSEGDLHKGMAISKRL 121
           I++YKV   GR +ISS GRKAT+SEFY +   SL  L    +      +    MA+ KR 
Sbjct: 80  IIVYKVRTDGRSNISSCGRKATVSEFYNVILPSLQRLHGDSLEMDITQEEALEMAVRKRY 139

Query: 122 EHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKR 181
           E   +  D ++ERE+ECGIC E  TK+VLP CCHAMC NCY DW ++SESCPFCRGS+KR
Sbjct: 140 EDNIKLSDADLERENECGICLEPCTKMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKR 199

Query: 182 VASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           V SGDLWVLTCG+DVVD +T++KEDMLRFYLF+N+LP+D PD LFLM YE+L+
Sbjct: 200 VNSGDLWVLTCGSDVVDTQTVLKEDMLRFYLFINSLPKDLPDALFLMYYEYLI 252

[Close]

BLAST of Cucsa.391730 vs. NCBI nr
Match: gi|1021048408|gb|KZN06188.1| (hypothetical protein DCAR_007025 [Daucus carota subsp. sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.1e-75
Identity = 138/233 (59.23%), Postives = 172/233 (73.82%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN+ AAS PR K GS  QMKLV NHL P++L+LLQW+DC C+ L  +Y NLFH
Sbjct: 20  LEADIQHANSLAASIPRGKGGSHLQMKLVYNHLAPLLLFLLQWIDCSCTCLLPNYLNLFH 79

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLFIFVVL-KFSEGDLHKGMAISKR 121
           +++YKV   G+P IS  GRKATI +FY +   SL  L   + L    +     G+   K+
Sbjct: 80  VLVYKVQRDGKPKISGRGRKATIKDFYAVILPSLRRLHNDLELTNIKDEKPELGIISKKK 139

Query: 122 LEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLK 181
           LE +  F ++++EREDECGIC E  TKIVLP CCHAMC NCY DW ++SESCPFCRGS+K
Sbjct: 140 LEAETSFSNIDLEREDECGICLEPCTKIVLPNCCHAMCINCYRDWNARSESCPFCRGSIK 199

Query: 182 RVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHL 234
           RV SGDLWVLTCGNDV+D  T+ KED+LRFYL++N+LP+D PD LF M YE+L
Sbjct: 200 RVRSGDLWVLTCGNDVIDNDTVSKEDLLRFYLYINSLPKDIPDGLFFMYYEYL 252

[Close]

BLAST of Cucsa.391730 vs. NCBI nr
Match: gi|470126433|ref|XP_004299189.1| (PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 289.3 bits (739), Expect = 6.2e-75
Identity = 145/235 (61.70%), Postives = 171/235 (72.77%), Query Frame = 1


Query: 2   LEADIRHANAFAASFPRVKDGSSFQMKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFH 61
           LEADI+HAN  AAS PR K G+  QMKLV N L P+ L+LLQW+DC  S L  SY NLF 
Sbjct: 20  LEADIQHANMLAASIPRSKGGTFLQMKLVYNQLAPIFLFLLQWIDCSSSCLLASYLNLFD 79

Query: 62  IVLYKVDFHGRPDISSYGRKATISEFYCMQSISLAPLF--IFVVLKFSEGDLHKGMAISK 121
           IV+YKV   GR DISSYGRKAT S+FY +   SL  L      V    E DL   M + K
Sbjct: 80  IVIYKVHSDGRADISSYGRKATTSQFYNVILPSLQRLHGDSLDVDITQEEDLK--MIVKK 139

Query: 122 RLEHKREFLDLEIEREDECGICFESRTKIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSL 181
           R E K +  D+++ERE ECGIC E  TK+VLP CCHAMC NCY DW ++SESCPFCRGS+
Sbjct: 140 RYEDKIKLSDVDLEREKECGICLEPCTKMVLPNCCHAMCINCYRDWNTRSESCPFCRGSI 199

Query: 182 KRVASGDLWVLTCGNDVVDPRTIMKEDMLRFYLFVNNLPEDTPDVLFLMDYEHLL 235
           KRV SGDLWVLTCG+D VD +T++KEDMLRFYLF+N+LP+D PD LFLM YE+L+
Sbjct: 200 KRVYSGDLWVLTCGSDAVDTQTVLKEDMLRFYLFINSLPKDVPDALFLMYYEYLI 252

The following BLAST results are available for this feature:

BLAST of Cucsa.391730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU99_CUCSA	1.5e-123	92.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1	[more]
A0A166E784_DAUCA	1.5e-75	59.23	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007025 PE=4 SV=1	[more]
B9I3L5_POPTR	4.3e-75	60.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2	[more]
A0A0K9QXH3_SPIOL	1.6e-74	57.32	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135440 PE=4 SV=1	[more]
A0A061G5P6_THECC	6.2e-74	59.41	RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_014560 PE=4 SV=1	[more]

BLAST of Cucsa.391730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24440.1	4.3e-66	54.85	RING/U-box superfamily protein	[more]
AT1G13195.1	1.7e-59	48.51	RING/U-box superfamily protein	[more]
AT5G58787.1	9.2e-45	39.56	RING/U-box superfamily protein	[more]
AT5G01520.1	2.7e-44	40.63	RING/U-box superfamily protein	[more]
AT3G47160.2	3.1e-40	37.04	RING/U-box superfamily protein	[more]

BLAST of Cucsa.391730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658002\|ref\|XP_011651953.1\|	2.1e-123	92.74	PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus]	[more]
gi\|659067407\|ref\|XP_008439294.1\|	1.2e-115	87.61	PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo]	[more]
gi\|645268169\|ref\|XP_008239405.1\|	1.6e-75	60.94	PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume]	[more]
gi\|1021048408\|gb\|KZN06188.1\|	2.1e-75	59.23	hypothetical protein DCAR_007025 [Daucus carota subsp. sativus]	[more]
gi\|470126433\|ref\|XP_004299189.1\|	6.2e-75	61.70	PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.391730.1	Cucsa.391730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 138..175 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 138..176 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 130..181 score: 5.5
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 153..162 scor
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 21..234 score: 4.4
None	No IPR available	PANTHER	PTHR15315:SF32	SUBFAMILY NOT NAMED	coord: 21..234 score: 4.4
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 135..181 score: 1.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 127..181 score: 8.64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.391730	Cla002585	Watermelon (97103) v1	cgywmB704
Cucsa.391730	Csa1G050110	Cucumber (Chinese Long) v2	cgycuB547
Cucsa.391730	ClCG03G003460	Watermelon (Charleston Gray)	cgywcgB669
Cucsa.391730	CSPI01G09170	Wild cucumber (PI 183967)	cgycpiB576
Cucsa.391730	Lsi02G004690	Bottle gourd (USVL1VR-Ls)	cgylsiB633
Cucsa.391730	CsaV3_1G009260	Cucumber (Chinese Long) v3	cgycucB592
Cucsa.391730	Cla97C03G054540	Watermelon (97103) v2	cgywmbB671

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.391730	Melon (DHL92) v3.6.1	cgymedB636
Cucsa.391730	Silver-seed gourd	carcgyB0424
Cucsa.391730	Silver-seed gourd	carcgyB0571
Cucsa.391730	Silver-seed gourd	carcgyB1124
Cucsa.391730	Wax gourd	cgywgoB781
Cucsa.391730	Cucurbita maxima (Rimu)	cgycmaB1082
Cucsa.391730	Cucurbita maxima (Rimu)	cgycmaB1083
Cucsa.391730	Cucurbita maxima (Rimu)	cgycmaB1084
Cucsa.391730	Cucurbita moschata (Rifu)	cgycmoB1080
Cucsa.391730	Cucurbita moschata (Rifu)	cgycmoB1081
Cucsa.391730	Cucurbita moschata (Rifu)	cgycmoB1082
Cucsa.391730	Melon (DHL92) v3.5.1	cgymeB642
Cucsa.391730	Cucurbita pepo (Zucchini)	cgycpeB1034
Cucsa.391730	Cucurbita pepo (Zucchini)	cgycpeB1035
Cucsa.391730	Cucurbita pepo (Zucchini)	cgycpeB1036