Cla002585 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002585
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger family protein (AHRD V1 *- D7KQC9_ARALL); contains Interpro domain(s) IPR001841 Zinc finger, RING-type
Location	Chr3 : 3622527 .. 3623899 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTAGTTTGTAACCATTTGACACCAGTCATTCTTTACTTGCTTCAATGGGTGGATTGCTCATGTTCATATCTATCTTTGAGTTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGAGCAAGTTGACTAAGAAGTTCTAAAAGTATTTGATATAAATTAGATTTACCATAATCCACCTGCTTAAACTTTTAAGTTGATTGATGATTTAACATGGTACCACAGTAGAAAATTATGTGTTTGAACCCTTGTAATGTCATTTACTCCTCTAACAAGTTTCAAACTCACAATTGACAAAGTGTTAAAGTATTTAATATAATTAAATTTGGCATAATTCAACAACTTAAGCTTTTAGGTTGATCGGTGATTTAACAAGAAGAAAAAAAGATAAAAGGGTAAAAGAAGAGAATAATGAAGTTTGATAATTTGTGTTAATCGACAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTGTACGTGATCTATCTTTTCTGCTCCTTTATTTATCTTTATTGTTTTAAAGTTCTTTGAAGGTTGTGATATGTCAAGCAAAAAATTAGAATGTGCCTTTGCTCTGGCACGTTTCTTTTGTACATCAGTTGAAAACAATCATCCTCATGTAGTTCTCTTCTGGAAAAGAGTTGTGGCAAACGGCTAACAATGTGCTTGCATATTGTTGTACGGTTAAAATAACCAGAAAACTTCAGTTCTTTTGTACTTCACAGTTTAAGATGATATTAATTCTCTTTAACATGAATGCAGCTTTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGTATTACTATTGAAGGCTTCACTCTTATGTCCACGTTTTTGACTCACTATATTCTTTATGGCTGATGTACTATTAGAGAAAAAAAAAAAAAAAAAAAAACCTTTGATGCTCCTTTCCCTCATCTGTTACAGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAA

mRNA sequence

ATGAAATTAGTTTGTAACCATTTGACACCAGTCATTCTTTACTTGCTTCAATGGGTGGATTGCTCATGTTCATATCTATCTTTGAGTTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTCTTTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAA

Coding sequence (CDS)

ATGAAATTAGTTTGTAACCATTTGACACCAGTCATTCTTTACTTGCTTCAATGGGTGGATTGCTCATGTTCATATCTATCTTTGAGTTACTTCAACCTATTCCACATAGTTCTGTACAAGGTGGACTTTGATGGAAGGCCAGATATCTCATCATACAGAAGGAAAGCAACTATAAGTGAATTCTACTCTTTTATATTGCCATCCCTACAACGGCTTTGTGATTATGCATCACAGGTAGATAGCATTGAAGATCCCCACAAGGGAATGGCCATCTCAAAGAGATTAGAACACAAGAGGGAACTTTTAGATTTGGACATAGAAAGAGAAGATGAATGTGGGATCTGTTTGGAGTCGCATACCAAAATTGTCTTGCCACATTGTTGCCATGCCTTGTGCACAAAATGCTACCATGATTGGAAATCGAAATCGGAATCTTGCCCGTTCTGCCGAGGAAGTTTGAAGAGAGTAGCCTCAGGGGATCTGTGGGTTCTCACATGCAGTAATGACGTGGTCGACACTCATACTATCATGAAAGAAGATATGTTACGCTTCTATCTTTTCATAAACAACCTACCTGAGGATACACCTGATGTTCTATTCTTAATGTATTATGAGCACTTGTTGTAA

Protein sequence

MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISEFYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKEDMLRFYLFINNLPEDTPDVLFLMYYEHLL

Homology

[Close]

BLAST of Cla002585 vs. TrEMBL
Match: A0A0A0LU99_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 9.9e-108
Identity = 186/208 (89.42%), Postives = 194/208 (93.27%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLVCNHLTPVILYLLQWVDC CS+L LSYFNLFHIVLYKVDF GRPDISSY RKATISE
Sbjct: 46  MKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISE 105

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FYS ILPSL+RLCDYASQ++SIED HKGMAISKRLEHKRE LDL+IEREDECGIC ES T
Sbjct: 106 FYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRT 165

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           KIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASGDLWVLTC NDVVD  TIMKED
Sbjct: 166 KIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKED 225

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 226 MLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

[Close]

BLAST of Cla002585 vs. TrEMBL
Match: M5WVC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010760mg PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.1e-77
Identity = 137/208 (65.87%), Postives = 168/208 (80.77%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P+ L+LLQW+DCS S L  SY NLFHI++YKV  DGR +ISS  RKAT+SE
Sbjct: 30  MKLVYNHLAPIFLFLLQWIDCSSSCLLSSYLNLFHIIVYKVRTDGRSNISSCGRKATVSE 89

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FY+ ILPSLQRL   + ++D  ++    MA+ KR E K +L D+D+ERE+ECGICLE  T
Sbjct: 90  FYNVILPSLQRLHGDSLEMDITQEEALEMAVRKRYEDKIKLSDVDLERENECGICLEPCT 149

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           K+VLP+CCHA+C  CY DW ++SESCPFCRGS+KRV SGDLWVLTC +DVVDT T++KED
Sbjct: 150 KMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVNSGDLWVLTCGSDVVDTQTVLKED 209

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLFIN+LP+D PD LFLMYYE+L+
Sbjct: 210 MLRFYLFINSLPKDLPDALFLMYYEYLI 237

[Close]

BLAST of Cla002585 vs. TrEMBL
Match: A0A0B0NP38_GOSAR (RING finger protein OS=Gossypium arboreum GN=F383_06692 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.7e-75
Identity = 136/210 (64.76%), Postives = 167/210 (79.52%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P++L+ LQW+DCSCS L  SY NLFHIV+Y+V  DGRP ISS RRKATI E
Sbjct: 44  MKLVYNHLAPILLFFLQWLDCSCSCLFSSYLNLFHIVVYQVRSDGRPSISSCRRKATIRE 103

Query: 61  FYSFILPSLQRLCDYASQVDSI--EDPHKGMAISKRLEHKRELLDLDIEREDECGICLES 120
           FYS ILPSLQRL    S++D+   ED    M + K+L+ KR++ D+++EREDECGICLE 
Sbjct: 104 FYSVILPSLQRLHGDLSELDATGEEDHCFEMVVKKKLDDKRKVSDMELEREDECGICLEP 163

Query: 121 HTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMK 180
             K+VLP+CCHA+C  CY DW  +SESCPFCRGSLKRV SGDLWVLT S DVV+T T++K
Sbjct: 164 CNKVVLPNCCHAMCINCYRDWSLRSESCPFCRGSLKRVTSGDLWVLTRSTDVVETKTVLK 223

Query: 181 EDMLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           ED+LRF+L+IN LP+D PD LF+MYYE+L+
Sbjct: 224 EDILRFHLYINKLPKDLPDALFVMYYEYLI 253

[Close]

BLAST of Cla002585 vs. TrEMBL
Match: A0A0D2QIV3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G109100 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.0e-75
Identity = 136/210 (64.76%), Postives = 165/210 (78.57%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P++L+ LQW+DCSCS L  SY NLFHIV+Y+V  DGRP ISS RRKATI E
Sbjct: 44  MKLVYNHLAPILLFFLQWLDCSCSCLFSSYLNLFHIVVYQVRSDGRPSISSCRRKATIRE 103

Query: 61  FYSFILPSLQRLCDYASQVDSI--EDPHKGMAISKRLEHKRELLDLDIEREDECGICLES 120
           FYS ILPSLQRL    S++D    ED    M + K+L+ KR++ D+++EREDECGICLE 
Sbjct: 104 FYSVILPSLQRLHGDLSELDETGEEDHCFEMVVKKKLDDKRKVSDMELEREDECGICLEP 163

Query: 121 HTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMK 180
             K+VLP+CCHA+C  CY DW  +SESCPFCRGSLKRV SGDLWVLT S DVV+T T++K
Sbjct: 164 CNKVVLPNCCHAMCINCYRDWSLRSESCPFCRGSLKRVTSGDLWVLTRSTDVVETKTVLK 223

Query: 181 EDMLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           ED+LRF L+IN LP+D PD LF+MYYE+L+
Sbjct: 224 EDILRFQLYINKLPKDLPDALFVMYYEYLI 253

[Close]

BLAST of Cla002585 vs. TrEMBL
Match: B9I3L5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2)

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 136/210 (64.76%), Postives = 167/210 (79.52%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P+ L+LLQW+DCSC+ L  +YFNLFHIV+YKV  D +P ISS  RKATI +
Sbjct: 45  MKLVYNHLAPIFLFLLQWMDCSCTCLLSTYFNLFHIVVYKVCSDRKPKISSCGRKATIRQ 104

Query: 61  FYSFILPSLQRLCDYASQVD-SIEDPH-KGMAISKRLEHKRELLDLDIEREDECGICLES 120
           FY+ ILPSLQRL     + D + E+ H   M +  RLE +R+  D+D+ REDECGICLE 
Sbjct: 105 FYAVILPSLQRLHGDTKEPDVTQEEGHFLEMIVKNRLEDRRKRSDVDLLREDECGICLEP 164

Query: 121 HTKIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMK 180
            TK+V+P CCHA+C  CYH+W ++SESCPFCRGSLKRV S DLWVLTCS+DVVDT+T++K
Sbjct: 165 CTKMVVPSCCHAMCINCYHEWNTRSESCPFCRGSLKRVNSEDLWVLTCSSDVVDTNTVLK 224

Query: 181 EDMLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           ED+LRFYL+INNLP+D PD LFLMYYEHL+
Sbjct: 225 EDILRFYLYINNLPKDIPDDLFLMYYEHLI 254

[Close]

BLAST of Cla002585 vs. NCBI nr
Match: gi|659067407|ref|XP_008439294.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo])

HSP 1 Score: 406.4 bits (1043), Expect = 3.1e-110
Identity = 190/208 (91.35%), Postives = 198/208 (95.19%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLVCNHLTPVILYLLQWVDCSCS+LSLSYFNLFHIVLYKVDF GRPDISSY RKATISE
Sbjct: 46  MKLVCNHLTPVILYLLQWVDCSCSFLSLSYFNLFHIVLYKVDFHGRPDISSYGRKATISE 105

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FYS ILPSLQRLCDYASQV+SIED HKGMAISKRLEHKRE LDL+IEREDECGIC ES T
Sbjct: 106 FYSVILPSLQRLCDYASQVESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRT 165

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           KIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASGDLWVLTC NDV+DT T++KED
Sbjct: 166 KIVLPNCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVIDTCTVIKED 225

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLFINNLPEDTPDVLFLMYYEHLL
Sbjct: 226 MLRFYLFINNLPEDTPDVLFLMYYEHLL 253

[Close]

BLAST of Cla002585 vs. NCBI nr
Match: gi|778658002|ref|XP_011651953.1| (PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 1.4e-107
Identity = 186/208 (89.42%), Postives = 194/208 (93.27%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLVCNHLTPVILYLLQWVDC CS+L LSYFNLFHIVLYKVDF GRPDISSY RKATISE
Sbjct: 46  MKLVCNHLTPVILYLLQWVDCFCSFLPLSYFNLFHIVLYKVDFHGRPDISSYGRKATISE 105

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FYS ILPSL+RLCDYASQ++SIED HKGMAISKRLEHKRE LDL+IEREDECGIC ES T
Sbjct: 106 FYSVILPSLRRLCDYASQIESIEDLHKGMAISKRLEHKREFLDLEIEREDECGICFESRT 165

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           KIVLP+CCHA+CT CYHDWKSKSESCPFCRGSLKRVASGDLWVLTC NDVVD  TIMKED
Sbjct: 166 KIVLPYCCHAMCTNCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCGNDVVDPRTIMKED 225

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLF+NNLPEDTPDVLFLM YEHLL
Sbjct: 226 MLRFYLFVNNLPEDTPDVLFLMDYEHLL 253

[Close]

BLAST of Cla002585 vs. NCBI nr
Match: gi|595848505|ref|XP_007209541.1| (hypothetical protein PRUPE_ppa010760mg [Prunus persica])

HSP 1 Score: 296.2 bits (757), Expect = 4.5e-77
Identity = 137/208 (65.87%), Postives = 168/208 (80.77%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P+ L+LLQW+DCS S L  SY NLFHI++YKV  DGR +ISS  RKAT+SE
Sbjct: 30  MKLVYNHLAPIFLFLLQWIDCSSSCLLSSYLNLFHIIVYKVRTDGRSNISSCGRKATVSE 89

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FY+ ILPSLQRL   + ++D  ++    MA+ KR E K +L D+D+ERE+ECGICLE  T
Sbjct: 90  FYNVILPSLQRLHGDSLEMDITQEEALEMAVRKRYEDKIKLSDVDLERENECGICLEPCT 149

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           K+VLP+CCHA+C  CY DW ++SESCPFCRGS+KRV SGDLWVLTC +DVVDT T++KED
Sbjct: 150 KMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVNSGDLWVLTCGSDVVDTQTVLKED 209

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLFIN+LP+D PD LFLMYYE+L+
Sbjct: 210 MLRFYLFINSLPKDLPDALFLMYYEYLI 237

[Close]

BLAST of Cla002585 vs. NCBI nr
Match: gi|645268169|ref|XP_008239405.1| (PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume])

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-76
Identity = 136/208 (65.38%), Postives = 166/208 (79.81%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV NHL P+ L+LLQW+DCS S L  SY NLFHI++YKV  DGR +ISS  RKAT+SE
Sbjct: 45  MKLVYNHLAPIFLFLLQWIDCSSSCLLSSYLNLFHIIVYKVRTDGRSNISSCGRKATVSE 104

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FY+ ILPSLQRL   + ++D  ++    MA+ KR E   +L D D+ERE+ECGICLE  T
Sbjct: 105 FYNVILPSLQRLHGDSLEMDITQEEALEMAVRKRYEDNIKLSDADLERENECGICLEPCT 164

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           K+VLP+CCHA+C  CY DW ++SESCPFCRGS+KRV SGDLWVLTC +DVVDT T++KED
Sbjct: 165 KMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVNSGDLWVLTCGSDVVDTQTVLKED 224

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLFIN+LP+D PD LFLMYYE+L+
Sbjct: 225 MLRFYLFINSLPKDLPDALFLMYYEYLI 252

[Close]

BLAST of Cla002585 vs. NCBI nr
Match: gi|470126433|ref|XP_004299189.1| (PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 291.2 bits (744), Expect = 1.4e-75
Identity = 136/208 (65.38%), Postives = 162/208 (77.88%), Query Frame = 1


Query: 1   MKLVCNHLTPVILYLLQWVDCSCSYLSLSYFNLFHIVLYKVDFDGRPDISSYRRKATISE 60
           MKLV N L P+ L+LLQW+DCS S L  SY NLF IV+YKV  DGR DISSY RKAT S+
Sbjct: 45  MKLVYNQLAPIFLFLLQWIDCSSSCLLASYLNLFDIVIYKVHSDGRADISSYGRKATTSQ 104

Query: 61  FYSFILPSLQRLCDYASQVDSIEDPHKGMAISKRLEHKRELLDLDIEREDECGICLESHT 120
           FY+ ILPSLQRL   +  VD  ++    M + KR E K +L D+D+ERE ECGICLE  T
Sbjct: 105 FYNVILPSLQRLHGDSLDVDITQEEDLKMIVKKRYEDKIKLSDVDLEREKECGICLEPCT 164

Query: 121 KIVLPHCCHALCTKCYHDWKSKSESCPFCRGSLKRVASGDLWVLTCSNDVVDTHTIMKED 180
           K+VLP+CCHA+C  CY DW ++SESCPFCRGS+KRV SGDLWVLTC +D VDT T++KED
Sbjct: 165 KMVLPNCCHAMCINCYRDWNTRSESCPFCRGSIKRVYSGDLWVLTCGSDAVDTQTVLKED 224

Query: 181 MLRFYLFINNLPEDTPDVLFLMYYEHLL 209
           MLRFYLFIN+LP+D PD LFLMYYE+L+
Sbjct: 225 MLRFYLFINSLPKDVPDALFLMYYEYLI 252

The following BLAST results are available for this feature:

BLAST of Cla002585 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU99_CUCSA	9.9e-108	89.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050110 PE=4 SV=1	[more]
M5WVC7_PRUPE	3.1e-77	65.87	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010760mg PE=4 SV=1	[more]
A0A0B0NP38_GOSAR	1.7e-75	64.76	RING finger protein OS=Gossypium arboreum GN=F383_06692 PE=4 SV=1	[more]
A0A0D2QIV3_GOSRA	5.0e-75	64.76	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G109100 PE=4 SV=1	[more]
B9I3L5_POPTR	3.2e-74	64.76	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s09480g PE=4 SV=2	[more]

BLAST of Cla002585 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067407\|ref\|XP_008439294.1\|	3.1e-110	91.35	PREDICTED: RING-H2 finger protein ATL47-like [Cucumis melo]	[more]
gi\|778658002\|ref\|XP_011651953.1\|	1.4e-107	89.42	PREDICTED: RING-H2 finger protein ATL47-like [Cucumis sativus]	[more]
gi\|595848505\|ref\|XP_007209541.1\|	4.5e-77	65.87	hypothetical protein PRUPE_ppa010760mg [Prunus persica]	[more]
gi\|645268169\|ref\|XP_008239405.1\|	2.9e-76	65.38	PREDICTED: RING-H2 finger protein ATL47-like [Prunus mume]	[more]
gi\|470126433\|ref\|XP_004299189.1\|	1.4e-75	65.38	PREDICTED: RING-H2 finger protein ATL47-like [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002585	Cla002585.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..149 score: 0
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 112..150 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 99..155 score: 2.7
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 127..136 scor
None	No IPR available	PANTHER	PTHR15315	RING FINGER PROTEIN 41, 151	coord: 1..208 score: 2.1E
None	No IPR available	PANTHER	PTHR15315:SF32	SUBFAMILY NOT NAMED	coord: 1..208 score: 2.1E
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 109..155 score: 1.
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 101..155 score: 1.48

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002585	Cla97C03G054540	Watermelon (97103) v2	wmwmbB124
Cla002585	Csa1G050110	Cucumber (Chinese Long) v2	cuwmB008
Cla002585	ClCG03G003460	Watermelon (Charleston Gray)	wcgwmB223
Cla002585	CSPI01G09170	Wild cucumber (PI 183967)	cpiwmB010
Cla002585	Cucsa.391730	Cucumber (Gy14) v1	cgywmB704
Cla002585	Lsi02G004690	Bottle gourd (USVL1VR-Ls)	lsiwmB184
Cla002585	CsGy1G009190	Cucumber (Gy14) v2	cgybwmB010
Cla002585	CsaV3_1G009260	Cucumber (Chinese Long) v3	cucwmB013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002585	Cucumber (Gy14) v1	cgywmB278
Cla002585	Cucurbita maxima (Rimu)	cmawmB053
Cla002585	Cucurbita maxima (Rimu)	cmawmB187
Cla002585	Cucurbita maxima (Rimu)	cmawmB368
Cla002585	Cucurbita moschata (Rifu)	cmowmB045
Cla002585	Cucurbita moschata (Rifu)	cmowmB175
Cla002585	Cucurbita moschata (Rifu)	cmowmB360
Cla002585	Melon (DHL92) v3.5.1	mewmB149
Cla002585	Watermelon (Charleston Gray)	wcgwmB322
Cla002585	Cucurbita pepo (Zucchini)	cpewmB025
Cla002585	Cucurbita pepo (Zucchini)	cpewmB352
Cla002585	Cucurbita pepo (Zucchini)	cpewmB509
Cla002585	Melon (DHL92) v3.6.1	medwmB145
Cla002585	Silver-seed gourd	carwmB0354
Cla002585	Silver-seed gourd	carwmB0489
Cla002585	Silver-seed gourd	carwmB1003
Cla002585	Watermelon (97103) v2	wmwmbB137
Cla002585	Wax gourd	wgowmB476