Csa1G046850 (gene) Cucumber (Chinese Long) v2

NameCsa1G046850
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5480200 .. 5482266 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTAAGGATAGGAGATTGAAAATACTCAAAAGTTACTTGATTTAGTAGATTGAAGAGAAATAGAGAGCACAGTCAACAGTGGTGGGAAGATTGACGGTGGCCGGAATGGAACGAAATCTTATATATAACAAAATTTCATATTTTATCGATTCTTAGTATAGGCGATGATAAGCTGAAACCAGAATAGGGACAGAAATAAACCAGTTGCCAAACACTAGAGATTTTCGAGTTTACAACAGAGCGAGCCCATTCGGAGTGTCTCCAGTTTCCAGCTCCGGTGAGAAAAATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGGTACTCTACTTACCATTCTCTTTTTTAAAAACCCTAATGCTCTTTCGGGCGTTTTAATTTGTACGATCTCCTGCTCGGACTTGGGGAATGCTTAGTGATCGGAAGTGAAATAATCGAAAGGAATTCTTCCAGGCGGTCCGCTCTTGATTATGATCATTTTAAATTATGTTTTGAGTATTTGTGATTTGATCTTCGTTTTTTTTCGCATTCATGGAAGTTCCATCTTTTGTTTCTTGTGAACGAAAGAATTTTTGGGTTATTTCTGAGAATTGAAGTACTCGATGCACGTGAGAAGATCATATACACATCGAATGTCAAGTTGAAGTTATTGCGATTGATCGGAACCGAGACTTGCTTAAAAGAGTGTTGCTGAATTAGATTTGACTCTCGCCGATAGGTTTTCACCTTTCCCATTTTTGCATCTCTTAACAGTTTTCCCTTGGTGTTCTGCTTTGAATATTTGGTTTTTGAGAAGTTATAATTGAAACTTGGACTGAATTGCTGAATTACTTCTTCATCAAAACTTTGTTTATTTGAGACTGAAACGATGGAGAAGACTTGTTGATACTCTACATGAAGGGCTTGTTGCACAGCATGATCTGTTACCATTTCTAGGTTTATAGCTTGAATATGATATCAATCTTCAATATCATATGAGTTTGAATATCATATTTATCTTCAACTTGTGTTTCAAAGTTCAAACCTAAAGAAGGGGAACGTTTACTAAATTTATGATAACTCATTAACTACTAACTACATTGGTATAGTCCAAGAGGTATAGATAGTATGAAACTCGGGCTTTACTAAGTTACAAATCCATACATCAAACACATTTGATGCAAACTCAAGTTTCTATTATCTATCTCTTTCTACAATCCAACACATTCACAGGTTAACGTTCCTGTCCTGTCTCCAACCTTTATAATCCCAAGTTAATAAAAAGTTGTCGGGACCGAAAACTTATTAAAAAGGTCAGCTTTACTTGTTCCTTTGCTGATTGCGATTTCTGGGGTGTGGTATTCTAAAATGTTTTGCTACCTTCTATCTTCGTTCTTGATGATAATTGTGGTGGTGATTATGCTGTCATTCAACTACCCTCTTAAAGCCTTAAAATGAAGAAGAGAAGAGGCTTCTGTTCTCACTCTTTCGTTAATTCAAGTGGATTCCGACCTCGAATCAGAGGGACTCAACTATCGAGCAGTGCAATTCTCCATGTGCTCTATTGCAATCTTGTAAGCTCTTCACTCACTTATGTATATTACTATCATGGCAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAAAACTACTTGCATCTTTGTGCCCTTTCTTGCCTTTACTCTTTAAAATCCTCAAATTGCTAGTTTTTTTTAACGATTGTTCTTTGTAAATCTGTCACTTTGAAAAGCCAGAGTTTTTGTAATCGTTCAATTTGCTACTGTTATACTGTTTCCAATTTTACTTTCAATATGATGTTACAATTATGACATTGAAAGTTGAATGGTGTTACTAATGC

mRNA sequence

ATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAA

Coding sequence (CDS)

ATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAA

Protein sequence

MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG*
BLAST of Csa1G046850 vs. TrEMBL
Match: A0A0A0LWF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046850 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 98
          VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 97

BLAST of Csa1G046850 vs. TrEMBL
Match: A0A151TRI4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008829 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.4e-40
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLV 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGK T +NDKED   EA+DDDADNA+ESE E+FEQETG
Sbjct: 61 VIGKTTNENDKEDFDNEADDDDADNAEESEGEDFEQETG 99

BLAST of Csa1G046850 vs. TrEMBL
Match: B9RAV1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508840 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 9.3e-40
Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWST+ IPTS+LLPSQWPQP +EELLLAMEE+D+EEKCNEIRKTNSNL 
Sbjct: 1  MLQFPAFMTQYPWSTKTIPTSYLLPSQWPQPHSEELLLAMEESDYEEKCNEIRKTNSNLP 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGK + DNDKED   +A+DDDADNA+ESE EEFEQETG
Sbjct: 61 VIGKTSVDNDKEDYDNDADDDDADNAEESEGEEFEQETG 99

BLAST of Csa1G046850 vs. TrEMBL
Match: A0A068UWH1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037364001 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-39
Identity = 79/99 (79.80%), Postives = 91/99 (91.92%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTS+LLP+QWPQPQ++ELLL+MEEA+FEEKCNEIRKTNSNL+
Sbjct: 1  MLQFPAFMTQYPWSTRMIPTSYLLPAQWPQPQSDELLLSMEEAEFEEKCNEIRKTNSNLL 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGK T DNDKED   +A+DDDADN +ESE ++FEQETG
Sbjct: 61 VIGKATTDNDKEDFDNDADDDDADNVEESEGDDFEQETG 99

BLAST of Csa1G046850 vs. TrEMBL
Match: A0A0B2QDE0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012180 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-39
Identity = 83/98 (84.69%), Postives = 89/98 (90.82%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNL+
Sbjct: 1  MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLI 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQET 97
          VIGK T +NDKED   EA+DDDADNA+ESE EEFEQET
Sbjct: 61 VIGKTTNENDKEDFDNEADDDDADNAEESEGEEFEQET 98

BLAST of Csa1G046850 vs. TAIR10
Match: AT5G63135.1 (AT5G63135.1 unknown protein)

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-35
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFP  MTQ+P ST+ IP S+LLP QWPQPQNEE+LLAMEEA+FEEKCNEIRK +  L 
Sbjct: 1  MLQFPTLMTQFPSSTKTIPASYLLPLQWPQPQNEEILLAMEEAEFEEKCNEIRKMSPALP 60

Query: 61 VIGKMTADNDKE--DIEAEDDDADNADESEAEEFEQETG 98
          VIGK   +N++E  D EAEDDDADNA+ES+ EEFEQETG
Sbjct: 61 VIGKPVVNNEQEEDDNEAEDDDADNAEESDGEEFEQETG 99

BLAST of Csa1G046850 vs. NCBI nr
Match: gi|449469568|ref|XP_004152491.1| (PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 98
          VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 97

BLAST of Csa1G046850 vs. NCBI nr
Match: gi|659067314|ref|XP_008438807.1| (PREDICTED: anaphase-promoting complex subunit 15 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-47
Identity = 94/97 (96.91%), Postives = 96/97 (98.97%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG 98
          VIGKMTADNDKEDIEAEDDDADNA+ESEAEEFEQETG
Sbjct: 61 VIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG 97

BLAST of Csa1G046850 vs. NCBI nr
Match: gi|802650403|ref|XP_012079984.1| (PREDICTED: uncharacterized protein LOC105640311 [Jatropha curcas])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWST+ IPTS LLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSNL 
Sbjct: 1  MLQFPAFMTQYPWSTKTIPTSHLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLP 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGKMT DNDKED   +A+DDDADNA+ESE EEFEQETG
Sbjct: 61 VIGKMTVDNDKEDYDNDADDDDADNAEESEGEEFEQETG 99

BLAST of Csa1G046850 vs. NCBI nr
Match: gi|1012358446|gb|KYP69630.1| (hypothetical protein KK1_008829 [Cajanus cajan])

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-40
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNLV
Sbjct: 1  MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLV 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGK T +NDKED   EA+DDDADNA+ESE E+FEQETG
Sbjct: 61 VIGKTTNENDKEDFDNEADDDDADNAEESEGEDFEQETG 99

BLAST of Csa1G046850 vs. NCBI nr
Match: gi|255540523|ref|XP_002511326.1| (PREDICTED: uncharacterized protein LOC8278292 [Ricinus communis])

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-39
Identity = 81/99 (81.82%), Postives = 90/99 (90.91%), Query Frame = 1

Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWST+ IPTS+LLPSQWPQP +EELLLAMEE+D+EEKCNEIRKTNSNL 
Sbjct: 1  MLQFPAFMTQYPWSTKTIPTSYLLPSQWPQPHSEELLLAMEESDYEEKCNEIRKTNSNLP 60

Query: 61 VIGKMTADNDKEDI--EAEDDDADNADESEAEEFEQETG 98
          VIGK + DNDKED   +A+DDDADNA+ESE EEFEQETG
Sbjct: 61 VIGKTSVDNDKEDYDNDADDDDADNAEESEGEEFEQETG 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LWF0_CUCSA4.9e-49100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046850 PE=4 SV=1[more]
A0A151TRI4_CAJCA5.4e-4084.85Uncharacterized protein OS=Cajanus cajan GN=KK1_008829 PE=4 SV=1[more]
B9RAV1_RICCO9.3e-4081.82Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1508840 PE=4 SV=1[more]
A0A068UWH1_COFCA1.2e-3979.80Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037364001 PE=4 SV=1[more]
A0A0B2QDE0_GLYSO1.6e-3984.69Uncharacterized protein OS=Glycine soja GN=glysoja_012180 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G63135.12.8e-3571.72 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449469568|ref|XP_004152491.1|7.1e-49100.00PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus][more]
gi|659067314|ref|XP_008438807.1|2.3e-4796.91PREDICTED: anaphase-promoting complex subunit 15 [Cucumis melo][more]
gi|802650403|ref|XP_012079984.1|1.2e-4084.85PREDICTED: uncharacterized protein LOC105640311 [Jatropha curcas][more]
gi|1012358446|gb|KYP69630.1|7.8e-4084.85hypothetical protein KK1_008829 [Cajanus cajan][more]
gi|255540523|ref|XP_002511326.1|1.3e-3981.82PREDICTED: uncharacterized protein LOC8278292 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026182ANAPC15
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
Vocabulary: Biological Process
TermDefinition
GO:0090266regulation of mitotic cell cycle spindle assembly checkpoint
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component GO:0005680 anaphase-promoting complex
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU099372cucumber EST collection version 3.0transcribed_cluster
CU130132cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G046850.1Csa1G046850.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU099372CU099372transcribed_cluster
CU130132CU130132transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026182Anaphase-promoting complex subunit 15PFAMPF15243ANAPC15coord: 9..95
score: 6.1
NoneNo IPR availablePANTHERPTHR37771FAMILY NOT NAMEDcoord: 2..97
score: 1.2
NoneNo IPR availablePANTHERPTHR37771:SF1SUBFAMILY NOT NAMEDcoord: 2..97
score: 1.2