CsGy1G008730 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G008730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transcription termination factor
Location	Chr1 : 5469650 .. 5471216 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGGTACTCTACTTACCATTCTCTTTTTTAAAAACCCTAATGCTCTTTCGGGCGTTTTAATTTGTACGATCTCCTGCTCGGACTTGGGGAATGCTTAGTGATCGGAAGTGAAATAATCGAAAGGAATTCTTCCAGGCGGTCCGCTCTTGATTATGATCATTTTAAATTATGTTTTGAGTATTTGTGATTTGATCTTCGTTTTTTTTCGCATTCATGGAAGTTCCATCTTTTGTTTCTTGTGAACGAAAGAATTTTTGGGTTATTTCTGAGAATTGAAGTACTCGATGCACGTGAGAAGATCATATACACATCGAATGTCAAGTTGAAGTTATTGCGATTGATCGGAACCGAGACTTGCTTAAAAGAGTGTTGCTGAATTAGATTTGACTCTCGCCGATAGGTTTTCACCTTTCCCATTTTTGCATCTCTTAACAGTTTTCCCTTGGTGTTCTGCTTTGAATATTTGGTTTTTGAGAAGTTATAATTGAAACTTGGACTGAATTGCTGAATTACTTCTTCATCAAAACTTTGTTTATTTGAGACTGAAACGATGGAGAAGACTTGTTGATACTCTACATGAAGGGCTTGTTGCACAGCATGATCTGTTACCATTTCTAGGTTTATAGCTTGAATATGATATCAATCTTCAATATCATATGAGTTTGAATATCATATTTATCTTCAACTTGTGTTTCAAAGTTCAAACCTAAAGAAGGGGAACGTTTACTAAATTTATGATAACTCATTAACTACTAACTACATTGGTATAGTCCAAGAGGTATAGATAGTATGAAACTCGGGCTTTACTAAGTTACAAATCCATACATCAAACACATTTGATGCAAACTCAAGTTTCTATTATCTATCTCTTTCTACAATCCAACACATTCACAGGTTAACGTTCCTGTCCTGTCTCCAACCTTTATAATCCCAAGTTAATAAAAAGTTGTCGGGACCGAAAACTTATTAAAAAGGTCAGCTTTACTTGTTCCTTTGCTGATTGCGATTTCTGGGGTGTGGTATTCTAAAATGTTTTGCTACCTTCTATCTTCGTTCTTGATGATAATTGTGGTGGTGATTATGCTGTCATTCAACTACCCTCTTAAAGCCTTAAAATGAAGAAGAGAAGAGGCTTCTGTTCTCACTCTTTCGTTAATTCAAGTGGATTCCGACCTCGAATCAGAGGGACTCAACTATCGAGCAGTGCAATTCTCCATGTGCTCTATTGCAATCTTGTAAGCTCTTCACTCACTTATGTATATTACTATCATGGCAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAA

mRNA sequence

ATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAA

Coding sequence (CDS)

ATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATGAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAA

Protein sequence

MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNADESEAEEFEQETG

Homology

[Close]

BLAST of CsGy1G008730 vs. NCBI nr
Match: XP_004152491.1 (PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical protein Csa_1G046850 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 4.7e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of CsGy1G008730 vs. NCBI nr
Match: XP_008438807.1 (PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 uncharacterized protein LOC111456762 [Cucurbita moschata] >XP_022994682.1 uncharacterized protein LOC111490324 [Cucurbita maxima] >XP_023541351.1 uncharacterized protein LOC111801554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 5.2e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of CsGy1G008730 vs. NCBI nr
Match: XP_022137094.1 (uncharacterized protein LOC111008654 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKM+ADNDKE
Sbjct: 61 VIGKMSADNDKE 72

[Close]

BLAST of CsGy1G008730 vs. NCBI nr
Match: XP_018813880.1 (PREDICTED: uncharacterized protein LOC108985877 [Juglans regia])

HSP 1 Score: 134.8 bits (338), Expect = 1.6e-28
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADND 71
          VIGK T DND
Sbjct: 61 VIGKTTVDND 70

[Close]

BLAST of CsGy1G008730 vs. NCBI nr
Match: GAV64611.1 (hypothetical protein CFOL_v3_08129 [Cephalotus follicularis])

HSP 1 Score: 133.7 bits (335), Expect = 3.5e-28
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQ+PAFMTQYPWSTR IPTSFLLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSN++
Sbjct: 1  MLQYPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNVI 60

Query: 61 VIGKMTADNDK 72
          +IGK T DNDK
Sbjct: 61 IIGKTTVDNDK 71

[Close]

BLAST of CsGy1G008730 vs. TAIR10
Match: AT5G63135.1 (unknown protein)

HSP 1 Score: 100.1 bits (248), Expect = 7.7e-22
Identity = 48/64 (75.00%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFP  MTQ+P ST+ IP S+LLP QWPQPQNEE+LLAMEEA+FEEKCNEIRK +  L 
Sbjct: 1  MLQFPTLMTQFPSSTKTIPASYLLPLQWPQPQNEEILLAMEEAEFEEKCNEIRKMSPALP 60

Query: 61 VIGK 65
          VIGK
Sbjct: 61 VIGK 64

[Close]

BLAST of CsGy1G008730 vs. TrEMBL
Match: tr|A0A0A0LWF0|A0A0A0LWF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.1e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of CsGy1G008730 vs. TrEMBL
Match: tr|A0A1S3AXA5|A0A1S3AXA5_CUCME (uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.4e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of CsGy1G008730 vs. TrEMBL
Match: tr|A0A2N9GV94|A0A2N9GV94_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31310 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.1e-30
Identity = 66/72 (91.67%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGK T DNDKE
Sbjct: 61 VIGKTTVDNDKE 72

[Close]

BLAST of CsGy1G008730 vs. TrEMBL
Match: tr|A0A2I4E3A7|A0A2I4E3A7_9ROSI (uncharacterized protein LOC108985877 OS=Juglans regia OX=51240 GN=LOC108985877 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-28
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADND 71
          VIGK T DND
Sbjct: 61 VIGKTTVDND 70

[Close]

BLAST of CsGy1G008730 vs. TrEMBL
Match: tr|A0A1Q3B9A8|A0A1Q3B9A8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08129 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-28
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60
          MLQ+PAFMTQYPWSTR IPTSFLLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSN++
Sbjct: 1  MLQYPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNVI 60

Query: 61 VIGKMTADNDK 72
          +IGK T DNDK
Sbjct: 61 IIGKTTVDNDK 71

The following BLAST results are available for this feature:

BLAST of CsGy1G008730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152491.1	4.7e-33	100.00	PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hy...	[more]
XP_008438807.1	5.2e-32	97.22	PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 u...	[more]
XP_022137094.1	1.5e-31	95.83	uncharacterized protein LOC111008654 [Momordica charantia]	[more]
XP_018813880.1	1.6e-28	91.43	PREDICTED: uncharacterized protein LOC108985877 [Juglans regia]	[more]
GAV64611.1	3.5e-28	85.92	hypothetical protein CFOL_v3_08129 [Cephalotus follicularis]	[more]

BLAST of CsGy1G008730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63135.1	7.7e-22	75.00	unknown protein	[more]

BLAST of CsGy1G008730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G008730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWF0\|A0A0A0LWF0_CUCSA	3.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=4 SV=1	[more]
tr\|A0A1S3AXA5\|A0A1S3AXA5_CUCME	3.4e-32	97.22	uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=...	[more]
tr\|A0A2N9GV94\|A0A2N9GV94_FAGSY	7.1e-30	91.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31310 PE=4 SV=1	[more]
tr\|A0A2I4E3A7\|A0A2I4E3A7_9ROSI	1.0e-28	91.43	uncharacterized protein LOC108985877 OS=Juglans regia OX=51240 GN=LOC108985877 P...	[more]
tr\|A0A1Q3B9A8\|A0A1Q3B9A8_CEPFO	2.3e-28	85.92	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08129 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **INTERPRO**
Term	Definition
IPR026182	ANAPC15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G008730.1	CsGy1G008730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026182	Anaphase-promoting complex subunit 15	PFAM	PF15243	ANAPC15	coord: 9..95 e-value: 6.6E-18 score: 64.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..97
None	No IPR available	PANTHER	PTHR37771	FAMILY NOT NAMED	coord: 1..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G008730	Csa1G046850	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G008730	MELO3C002295	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G008730	CSPI01G08780	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G008730	CmaCh18G001890	Cucurbita maxima (Rimu)	cgybcmaB085
CsGy1G008730	CmoCh18G001500	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G008730	Lsi02G004090	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G008730	Cp4.1LG09g09970	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G008730	MELO3C002295.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G008730	CsaV3_1G008810	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G008730	Cla97C01G012530	Watermelon (97103) v2	cgybwmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G008730	Cucurbita maxima (Rimu)	cgybcmaB021
CsGy1G008730	Cucurbita maxima (Rimu)	cgybcmaB048
CsGy1G008730	Cucurbita maxima (Rimu)	cgybcmaB073
CsGy1G008730	Cucurbita maxima (Rimu)	cgybcmaB102
CsGy1G008730	Cucurbita moschata (Rifu)	cgybcmoB042
CsGy1G008730	Cucurbita moschata (Rifu)	cgybcmoB067
CsGy1G008730	Cucurbita pepo (Zucchini)	cgybcpeB069
CsGy1G008730	Cucumber (Chinese Long) v2	cgybcuB011
CsGy1G008730	Bottle gourd (USVL1VR-Ls)	cgyblsiB047
CsGy1G008730	Bottle gourd (USVL1VR-Ls)	cgyblsiB062
CsGy1G008730	Melon (DHL92) v3.6.1	cgybmedB037
CsGy1G008730	Watermelon (Charleston Gray)	cgybwcgB012
CsGy1G008730	Watermelon (Charleston Gray)	cgybwcgB056
CsGy1G008730	Watermelon (Charleston Gray)	cgybwcgB068
CsGy1G008730	Watermelon (Charleston Gray)	cgybwcgB088
CsGy1G008730	Watermelon (97103) v1	cgybwmB035
CsGy1G008730	Watermelon (97103) v1	cgybwmB053
CsGy1G008730	Wild cucumber (PI 183967)	cgybcpiB010
CsGy1G008730	Silver-seed gourd	carcgybB0500
CsGy1G008730	Silver-seed gourd	carcgybB0620
CsGy1G008730	Silver-seed gourd	carcgybB0991
CsGy1G008730	Cucumber (Chinese Long) v3	cgybcucB018
CsGy1G008730	Watermelon (97103) v2	cgybwmbB055
CsGy1G008730	Watermelon (97103) v2	cgybwmbB068
CsGy1G008730	Watermelon (97103) v2	cgybwmbB084
CsGy1G008730	Wax gourd	cgybwgoB027
CsGy1G008730	Wax gourd	cgybwgoB065