Cla97C01G012530 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G012530
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
Location	Cla97Chr01 : 25271154 .. 25273060 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCCACGTCGTTTTTACTGCCGTCTCAGTGGCCACAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGGTACTCTATCTCTAGTTACCATTCTCTTTTCAATAAACCCTAATGCTCTTTCTTCTCTGGCATTTTATTTGTACAATCTCCTGCTTGGACTTGGGAAATGCGTAGGGATCGAATGTGAAATCATCGGAATGTTGATGTTAGTTTAATTACGGCATATTGTGGATTCTCCCATGCGGTCCGCTCTTGATTGTCACCATTTTAAATTATGTTTGAGTATTTGTGATTTTATCTTCGTTTTCTTCCGCATTCATGTACACGAACAAGTTTTTGGGGTATTTCTGAGAATTGGACTGATCCACGAGTAAAGACCTTATATACATCGAATGTCAAGTTGAAGTTAGTGCAATTGATTGAAATCGACGCTTGCTCAAAAGACTGTTGTTGAATTAAATCTGACTCTCGCCGTTAGGTTTTCACCTTTCTCACTTTTGCATCTCTAACAGTTTTCCCTTGGAGGTCTGCTTTGAATATTTGATTTTTGAGGAATTTGCTGCTATAATCATTGAAACTTGGACTGAATTGCTGTTAATTACTTCTTCATCAATATTTTGTTTATGTGAGGCTGAAACCATGGAGAAAACTTGTTAATATTCTACTTGAAGGGTTTGTTGCCGAGCACGATCTATTCCCATTTCTAGGTTTAGCTTGAATATATTGAATATGATATTTATGTTCAACCTTGTGTTTTGCAAATGGACAAAACAACTAAGGAAAAACTTCAAAAAGCCCAACCAAACTGGAAACTATTGGCCTTGAACGAGCTAACGGAAACCCACAGAAAATGAAGAATGGTGAGATCACGCCTAAAACAACATCCATCCATTGAAAGACTCACTGAAAGGCTCCAAAGGAAACTTCAACCGAGGAACTTCTGTTCAACCTTGTGTTTCGAAATTCAAACCTAAAGAAAGGGGATGTTCCAATGTGTAGTATGGTATTTTCCATGAGCAAGGCTGTTTGAGTACTCATATGATTATATTTGTGATGACTTATTAACCTTTAAGGTTTTGGGTTCATTAGTGATTTAAAATTGTGTAACTCGGGTTGTGGAATTGTCAGCCCAAAACTTGCCTACTTGTAGCACAGACTAAGTTACAAATCCATACATCTAACACATTTGAAGCAAACTCAAGTTTCTATAATGTATTCCTTTCTACAATCCAATGCATACCACAGGTTCACTTTCAAACTCAAGTTTCTATAATGTATTCCTTTCTACAATCCAACGCATACCACAGGTTCACTTTCCCACCTGACTCCAAACTTCATTATCCCAAGTTTATAAACTGGAGCCAAAAATTTACTAAAAATGTTAGCTCTATTTGTACTTTTGCCGATTATGATTTCTTGGGTGTGATATTATTAAATGTTGTGCGACCTTCTATCTTCCTTCTATGTGATAAGTGTGGCGGTGATTAGGCCTTCATTCAACTACCCTCTTAAAGCCTTAGAAGGAAGAAGGTAAGGGGCTTCTGTTCTCACTCTTTCACTAATTCAATTGGATTCCGACCTCGAATCAGAGGAACTCAACTAACAAACAATGCAATTCTCCATGTGCACTATTGCAATTTTGTAAGCTCTTCTCTCACTTGTGTGTATTACTATCATGGCAGTGCAATGAAATTAGGAAGACAAACAGCAACCTGGTTGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCCGAGGCTGAAGAATTCGAGCAGGAAACTGGTTAA

mRNA sequence

ATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCCACGTCGTTTTTACTGCCGTCTCAGTGGCCACAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAGACAAACAGCAACCTGGTTGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCCGAGGCTGAAGAATTCGAGCAGGAAACTGGTTAA

Coding sequence (CDS)

ATGCTGCAGTTTCCGGCTTTCATGACACAGTACCCTTGGTCTACAAGGACAATTCCCACGTCGTTTTTACTGCCGTCTCAGTGGCCACAACCCCAAAACGAAGAGCTACTGCTCGCCATGGAAGAGTCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAGACAAACAGCAACCTGGTTGTCATTGGCAAAATGACTGCTGACAATGATAAGGAAGACATAGAGGCAGAAGATGATGATGCTGACAATGCTGAGGAATCCGAGGCTGAAGAATTCGAGCAGGAAACTGGTTAA

Protein sequence

MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLVVIGKMTADNDKEDIEAEDDDADNAEESEAEEFEQETG

Homology

[Close]

BLAST of Cla97C01G012530 vs. NCBI nr
Match: XP_008438807.1 (PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 uncharacterized protein LOC111456762 [Cucurbita moschata] >XP_022994682.1 uncharacterized protein LOC111490324 [Cucurbita maxima] >XP_023541351.1 uncharacterized protein LOC111801554 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.4 bits (376), Expect = 6.1e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. NCBI nr
Match: XP_022137094.1 (uncharacterized protein LOC111008654 [Momordica charantia])

HSP 1 Score: 147.9 bits (372), Expect = 1.8e-32
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKM+ADNDKE
Sbjct: 61 VIGKMSADNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. NCBI nr
Match: XP_004152491.1 (PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hypothetical protein Csa_1G046850 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. NCBI nr
Match: XP_018813880.1 (PREDICTED: uncharacterized protein LOC108985877 [Juglans regia])

HSP 1 Score: 137.9 bits (346), Expect = 1.8e-29
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADND 71
          VIGK T DND
Sbjct: 61 VIGKTTVDND 70

[Close]

BLAST of Cla97C01G012530 vs. NCBI nr
Match: GAV64611.1 (hypothetical protein CFOL_v3_08129 [Cephalotus follicularis])

HSP 1 Score: 136.7 bits (343), Expect = 4.1e-29
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQ+PAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSN++
Sbjct: 1  MLQYPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNVI 60

Query: 61 VIGKMTADNDK 72
          +IGK T DNDK
Sbjct: 61 IIGKTTVDNDK 71

[Close]

BLAST of Cla97C01G012530 vs. TrEMBL
Match: tr|A0A1S3AXA5|A0A1S3AXA5_CUCME (uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. TrEMBL
Match: tr|A0A0A0LWF0|A0A0A0LWF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGKMTADNDKE
Sbjct: 61 VIGKMTADNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. TrEMBL
Match: tr|A0A2N9GV94|A0A2N9GV94_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31310 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-31
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADNDKE 73
          VIGK T DNDKE
Sbjct: 61 VIGKTTVDNDKE 72

[Close]

BLAST of Cla97C01G012530 vs. TrEMBL
Match: tr|A0A2I4E3A7|A0A2I4E3A7_9ROSI (uncharacterized protein LOC108985877 OS=Juglans regia OX=51240 GN=LOC108985877 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSNLV
Sbjct: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 61 VIGKMTADND 71
          VIGK T DND
Sbjct: 61 VIGKTTVDND 70

[Close]

BLAST of Cla97C01G012530 vs. TrEMBL
Match: tr|A0A1Q3B9A8|A0A1Q3B9A8_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08129 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.7e-29
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQ+PAFMTQYPWSTRTIPTSFLLPSQWPQP +EELLLAMEESDFEEKCNEIRKTNSN++
Sbjct: 1  MLQYPAFMTQYPWSTRTIPTSFLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNVI 60

Query: 61 VIGKMTADNDK 72
          +IGK T DNDK
Sbjct: 61 IIGKTTVDNDK 71

[Close]

BLAST of Cla97C01G012530 vs. TAIR10
Match: AT5G63135.1 (unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.5e-22
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 1  MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60
          MLQFP  MTQ+P ST+TIP S+LLP QWPQPQNEE+LLAMEE++FEEKCNEIRK +  L 
Sbjct: 1  MLQFPTLMTQFPSSTKTIPASYLLPLQWPQPQNEEILLAMEEAEFEEKCNEIRKMSPALP 60

Query: 61 VIGK 65
          VIGK
Sbjct: 61 VIGK 64

The following BLAST results are available for this feature:

BLAST of Cla97C01G012530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438807.1	6.1e-33	100.00	PREDICTED: uncharacterized protein LOC103483797 [Cucumis melo] >XP_022954520.1 u...	[more]
XP_022137094.1	1.8e-32	98.61	uncharacterized protein LOC111008654 [Momordica charantia]	[more]
XP_004152491.1	6.8e-32	97.22	PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus] >KGN64341.1 hy...	[more]
XP_018813880.1	1.8e-29	94.29	PREDICTED: uncharacterized protein LOC108985877 [Juglans regia]	[more]
GAV64611.1	4.1e-29	88.73	hypothetical protein CFOL_v3_08129 [Cephalotus follicularis]	[more]

BLAST of Cla97C01G012530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXA5\|A0A1S3AXA5_CUCME	4.0e-33	100.00	uncharacterized protein LOC103483797 OS=Cucumis melo OX=3656 GN=LOC103483797 PE=...	[more]
tr\|A0A0A0LWF0\|A0A0A0LWF0_CUCSA	4.5e-32	97.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G046850 PE=4 SV=1	[more]
tr\|A0A2N9GV94\|A0A2N9GV94_FAGSY	8.4e-31	94.44	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31310 PE=4 SV=1	[more]
tr\|A0A2I4E3A7\|A0A2I4E3A7_9ROSI	1.2e-29	94.29	uncharacterized protein LOC108985877 OS=Juglans regia OX=51240 GN=LOC108985877 P...	[more]
tr\|A0A1Q3B9A8\|A0A1Q3B9A8_CEPFO	2.7e-29	88.73	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08129 PE=4...	[more]

BLAST of Cla97C01G012530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G012530 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63135.1	4.5e-22	75.00	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **Biological Process**
Term	Definition
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint

Vocabulary: **INTERPRO**
Term	Definition
IPR026182	ANAPC15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component	GO:0005680	anaphase-promoting complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G012530.1	Cla97C01G012530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..97
None	No IPR available	PANTHER	PTHR37771	FAMILY NOT NAMED	coord: 1..97
IPR026182	Anaphase-promoting complex subunit 15	PFAM	PF15243	ANAPC15	coord: 9..95 e-value: 2.0E-18 score: 66.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G012530	Cla003438	Watermelon (97103) v1	wmwmbB248
Cla97C01G012530	Csa1G046850	Cucumber (Chinese Long) v2	cuwmbB001
Cla97C01G012530	MELO3C002295	Melon (DHL92) v3.5.1	mewmbB142
Cla97C01G012530	ClCG01G013460	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G012530	CSPI01G08780	Wild cucumber (PI 183967)	cpiwmbB000
Cla97C01G012530	Cucsa.098740	Cucumber (Gy14) v1	cgywmbB117
Cla97C01G012530	CmaCh18G001890	Cucurbita maxima (Rimu)	cmawmbB395
Cla97C01G012530	CmoCh18G001500	Cucurbita moschata (Rifu)	cmowmbB379
Cla97C01G012530	Lsi02G004090	Bottle gourd (USVL1VR-Ls)	lsiwmbB155
Cla97C01G012530	CsGy1G008730	Cucumber (Gy14) v2	cgybwmbB001
Cla97C01G012530	MELO3C002295.2	Melon (DHL92) v3.6.1	medwmbB133
Cla97C01G012530	Carg06748	Silver-seed gourd	carwmbB0514
Cla97C01G012530	CsaV3_1G008810	Cucumber (Chinese Long) v3	cucwmbB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G012530	Silver-seed gourd	carwmbB1058
Cla97C01G012530	Cucurbita maxima (Rimu)	cmawmbB214
Cla97C01G012530	Cucurbita moschata (Rifu)	cmowmbB197
Cla97C01G012530	Wax gourd	wgowmbB450