CU099372 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU099372
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	BnaA09g06480D protein
Location	Chr1 : 5480179 .. 5482111 (-)
Sequence length	670

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAGTATAGGCGATGATAAGCTGAAACCAGAATAGGGACAGAAATAAACCAGTTGCCAAACACTAGAGATTTTCGAGTTTACAACAGAGCGAGCCCATTCGGAGTGTCTCCAGTTTCCAGCTCCGGTGAGAAAAATGCTGCAGTTCCCGGCTTTCATGACACAGTATCCTTGGTCTACCAGGAAAATTCCGACGTCGTTTTTACTGCCGTCTCAGTGGCCTCAACCCCAGAACGAAGAGCTACTGCTCGCCATGGAAGAAGCTGATTTTGAAGAAAAGTGCAATGAAATTAGGAAAACAAACAGCAACCTTGTGGTCATCGGAAAAATGACTGCTGACAATGATAAGGAAGACATTGAGGCAGAAGATGATGATGCTGACAATGCTGATTAATCTGAGGCTGAAGAATTTGAGCAGGAAACTGGCTAAAACTACTTGCATCTTTGTGCCCTTTCTTGCCTTTACTCTTTAAAATCCTCAAATTGCTAGTTTTTTTTAACGATTGTTCTTTGTAAATCTGTCACTTTGAAAAGCCAGAGTTTTTGTAATCGTTCAATTTGCTACTGTTATACTGTTTCCAATTTTACTTTCAATATGATGTTACAATTATGACATTGAAAGTTGAATGGTGTTACTAATGCTTGATCAGAAGAATTGTACTCAG

Library


Library category	ESTs
fruit (8DPP) library	9
gynoecious flower library	2
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU099372 vs. TrEMBL
Match: A0A0A0LWF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046850 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1   MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 202 VIGKMT 261
           VIGKMT
Sbjct: 61  VIGKMT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. TrEMBL
Match: A0A068UWH1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037364001 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.0e-26
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWSTR IPTS+LLP+QWPQPQ++ELLL+MEEA+FEEKCNEIRKTNSNL+
Sbjct: 1   MLQFPAFMTQYPWSTRMIPTSYLLPAQWPQPQSDELLLSMEEAEFEEKCNEIRKTNSNLL 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKAT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. TrEMBL
Match: A0A151TRI4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008829 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.8e-26
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNLV
Sbjct: 1   MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLV 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKTT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. TrEMBL
Match: I1KCB7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G177900 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNL+
Sbjct: 1   MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLI 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKTT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. TrEMBL
Match: A0A0B2QDE0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012180 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-25
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNL+
Sbjct: 1   MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLI 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKTT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. NCBI nr
Match: gi|449469568|ref|XP_004152491.1| (PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV
Sbjct: 1   MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 60

Query: 202 VIGKMT 261
           VIGKMT
Sbjct: 61  VIGKMT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. NCBI nr
Match: gi|659067314|ref|XP_008438807.1| (PREDICTED: anaphase-promoting complex subunit 15 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWSTR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRKTNSNLV
Sbjct: 1   MLQFPAFMTQYPWSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKTNSNLV 60

Query: 202 VIGKMT 261
           VIGKMT
Sbjct: 61  VIGKMT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. NCBI nr
Match: gi|802650403|ref|XP_012079984.1| (PREDICTED: uncharacterized protein LOC105640311 [Jatropha curcas])

HSP 1 Score: 124.8 bits (312), Expect = 1.9e-25
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWST+ IPTS LLPSQWPQP +EELLLAMEE+DFEEKCNEIRKTNSNL 
Sbjct: 1   MLQFPAFMTQYPWSTKTIPTSHLLPSQWPQPHSEELLLAMEESDFEEKCNEIRKTNSNLP 60

Query: 202 VIGKMT 261
           VIGKMT
Sbjct: 61  VIGKMT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. NCBI nr
Match: gi|661883651|emb|CDP12736.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 124.4 bits (311), Expect = 2.5e-25
Identity = 57/66 (86.36%), Postives = 64/66 (96.97%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPAFMTQYPWSTR IPTS+LLP+QWPQPQ++ELLL+MEEA+FEEKCNEIRKTNSNL+
Sbjct: 1   MLQFPAFMTQYPWSTRMIPTSYLLPAQWPQPQSDELLLSMEEAEFEEKCNEIRKTNSNLL 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKAT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

[Close]

BLAST of CU099372 vs. NCBI nr
Match: gi|1012358446|gb|KYP69630.1| (hypothetical protein KK1_008829 [Cajanus cajan])

HSP 1 Score: 124.0 bits (310), Expect = 3.3e-25
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 142 MLQFPAFMTQYPWSTRKIPTSFLLPSQWPQPQNEELLLAMEEADFEEKCNEIRKTNSNLV 201
           MLQFPA+MTQYP STR IPTSFLLPSQWPQPQNEELLLAMEE+DFEEKCNEIRK NSNLV
Sbjct: 1   MLQFPAYMTQYPLSTRTIPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLV 60

Query: 202 VIGKMT 261
           VIGK T
Sbjct: 61  VIGKTT 66

Query: 262  321
           
Sbjct: 121  66

Query: 322  340
           
Sbjct: 181  66

The following BLAST results are available for this feature:

BLAST of CU099372 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWF0_CUCSA	4.0e-30	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046850 PE=4 SV=1	[more]
A0A068UWH1_COFCA	6.0e-26	86.36	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00037364001 PE=4 SV=1	[more]
A0A151TRI4_CAJCA	7.8e-26	90.91	Uncharacterized protein OS=Cajanus cajan GN=KK1_008829 PE=4 SV=1	[more]
I1KCB7_SOYBN	1.0e-25	89.39	Uncharacterized protein OS=Glycine max GN=GLYMA_06G177900 PE=4 SV=1	[more]
A0A0B2QDE0_GLYSO	1.0e-25	89.39	Uncharacterized protein OS=Glycine soja GN=glysoja_012180 PE=4 SV=1	[more]

BLAST of CU099372 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449469568\|ref\|XP_004152491.1\|	1.7e-29	100.00	PREDICTED: uncharacterized protein LOC101206898 [Cucumis sativus]	[more]
gi\|659067314\|ref\|XP_008438807.1\|	1.8e-28	96.97	PREDICTED: anaphase-promoting complex subunit 15 [Cucumis melo]	[more]
gi\|802650403\|ref\|XP_012079984.1\|	1.9e-25	89.39	PREDICTED: uncharacterized protein LOC105640311 [Jatropha curcas]	[more]
gi\|661883651\|emb\|CDP12736.1\|	2.5e-25	86.36	unnamed protein product [Coffea canephora]	[more]
gi\|1012358446\|gb\|KYP69630.1\|	3.3e-25	90.91	hypothetical protein KK1_008829 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR026182	ANAPC15

Vocabulary: **Cellular Component**
Term	Definition
GO:0005680	anaphase-promoting complex

Vocabulary: **Biological Process**
Term	Definition
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint
cellular_component	GO:0005680	anaphase-promoting complex

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G046850	Csa1G046850	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LUSEP	FKNP3UI02LUSEP	EST
FKNP3UI02M410X	FKNP3UI02M410X	EST
FKNP3UI02M9HC1	FKNP3UI02M9HC1	EST
FKNP3UI02MM4SX	FKNP3UI02MM4SX	EST
FKNP3UI02N3AM6	FKNP3UI02N3AM6	EST
FKNP3UI02NABDH	FKNP3UI02NABDH	EST
FKNP3UI02NK579	FKNP3UI02NK579	EST
FKNP3UI02NWWH3	FKNP3UI02NWWH3	EST
FKNP3UI02OPZE1	FKNP3UI02OPZE1	EST
G0000026	G0000026	EST
G0164356	G0164356	EST
H0122744	H0122744	EST
H0176798	H0176798	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026182	Anaphase-promoting complex subunit 15	PFAM	PF15243	ANAPC15	coord: 8..84 score: 5.4
None	No IPR available	PANTHER	PTHR37771	FAMILY NOT NAMED	coord: 2..85 score: 4.7