Csa1G043180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G043180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC4; contains IPR006591 (RNA polymerase archaeal subunit P/eukaryotic subunit RPC10)
Location	Chr1 : 4784696 .. 4786827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTGATTTATTTTTAAACCAACGACGAGCCCCCTTCCCTCCGTCTCTCTCATCTCGCATCCTCTCATTCTCTTTCGTCTTCGTCTTCGTCTTCGTCTCCTCTTCCTCACCTTTGACTAAAATTAATATAAGAACCAAAAAGTTATTTTAACATAAAAAAGAAGGGAAAAACCCTACTACACCTTCTCCTCCCTTTTATTTTTGTTTGATTTTTCCCTCACCCATCATTATTCGTATCGTCCTTGCAGCGGTAGGTACGCGCCGATTGTTTTTTCTCTCCTATCCTTCCGCCATCGCGGTCGCCGGTCGTCGGCACATTCTCACCCCCATTTTTCTTTATTCTCATTGTTCCGTTGATGCTTGTTTCTTACTTGTGTGTGCAATAATTGGTTTGCAGGAAGATTTTTGAAGCTTGACTCATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGGTATACTTGTTGTGTTTTTACGGATTTCGGGATTGAATATCTCCCGATTATTTAGGTTCTTTAGTTATGTTATCGGATGCATCTTTTAACAAGTATCTAGTTACTTTGATTATATTAAGACTGGGAATTTAGAAGTTTCTTGGTTAGAATAATTGCTCTAAATATACGCGTATATATATGACTATGTTTGGGAATTGAGAGATGTAAAATTTGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATACTTCTTCTGATTTTGGTGGTTATTATTGTTATTATTATTTTGTTCATGAATATGTCGTCTGTCAATTGAACATTCTGTTAAAGATGATTGGAATTTTGAATCTCATCAAATAAGTTGTCTTAGATTTTCATATGTTTGATTATAAATCTTATATGGAACAAGAAACATAGATGAGCTATTTGGTATGAGTAGATATTGAAGAAGTGTCACACATGCGGGTCAAACTCTGAGACTGGCGGCTTTGGCTGGTTTTGCATATAGGCATGGTTGGGAGGTTTTAAAATGGTTGTAATCACTTTATCATCTTCGTAGATCACTCCAAAACATGTTTTGCTCAACCAAAATCAACTTGACTGTTTGAAAGTCACATTTAAAAGAATTAAATCAAAAGGTAAATTGATCTTGAACTATAAAAGACTTGTTTTGGAGTGATTTTGAGCTCACCAAAACTGACTTTAACTCTATCAAAATCATCTTCTTGTGTCGAGAACTCTATATCCACTTCACTACTTTGCACGAGTTGAATGATCGGCTACGTTTTCACTTATTTTTTTCTGTTTGAAAATCATTTGATCCACTCTATAACATCCATACTCAATGCTGTTTTCTTCCTGGTTAAATCTTATTTACCTTCTTTGTAATTCATTTGAAGATTCTGAGTAATGGGTAATCTAAAACAACTATTTTATTGACTTAGTTTGTTCTGAAGTTTATAGATTGCACATATATCCAACTGTTAATTGGCAGGATGGTTGTAGTTTGGGTAATATACTGTCACAACAGGATGTATTTCAGCAGAATCTATTATACTTGACCTAAGTCGATAATTGACTGAAAAATTTGTTTCTTGGGGTATCCTTGTAATCTTATATGACTTGGAATGCTCTCTTACTATAAGTCTTGAGATTAAGTTTAGATTCTCTCTTTATGGATGTTATTGGAGTCTATTCTCTTAGTTTAGTTTTTTCAATATTTTTGTTATATGGGTCAATTTGCATTACTTTCTGTGTCCTTGATATTTATTTGCTTCTTCCAAATTTGAAGTCCAATCCAATTCTTGCCTATTACTGCAGTTGTTCAGTACGAGGCCCGCTGAAATGCTTATTCTTGCAATGGACTTCTACTAGTATCATGAATATTTTGTAAGTTTCTTTTAGGAAAACAAAAACAATACTCGATATGGATTAAGGACTTGCTGTAGTACAAACATGTTGATAATGCTGCTACTCTATGATTAAATATTTTTCGTTTCAAATGCCATTATCCCCTTGTGCTAACTCCATATCCAACTGATAATATGAATGAATGGTTTATCTCTTGATAGACTGGATGGTTCAGTTTTGCATTTCCA

mRNA sequence

ATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA

Coding sequence (CDS)

ATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA

Protein sequence

MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR*

Homology

[Close]

BLAST of Csa1G043180 vs. Swiss-Prot
Match: NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana GN=NRPB12 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-22
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. Swiss-Prot
Match: RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Csa1G043180 vs. Swiss-Prot
Match: RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Csa1G043180 vs. Swiss-Prot
Match: RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Csa1G043180 vs. Swiss-Prot
Match: RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-12
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63

[Close]

BLAST of Csa1G043180 vs. TrEMBL
Match: A0A0A0LQM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043180 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 9.3e-23
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TrEMBL
Match: A0A022RDU6_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017594mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TrEMBL
Match: V7C304_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G138700g PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TrEMBL
Match: A0A067GN92_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035461mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TrEMBL
Match: V4UBY9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017429mg PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TAIR10
Match: AT5G41010.1 (AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-23
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. TAIR10
Match: AT1G53690.1 (AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 68.9 bits (167), Expect = 1.0e-12
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 2  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR 42
          D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

[Close]

BLAST of Csa1G043180 vs. NCBI nr
Match: gi|1000949640|ref|XP_015579873.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. NCBI nr
Match: gi|848871798|ref|XP_012836463.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata])

HSP 1 Score: 111.3 bits (277), Expect = 5.1e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. NCBI nr
Match: gi|356531072|ref|XP_003534102.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max])

HSP 1 Score: 110.9 bits (276), Expect = 6.7e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. NCBI nr
Match: gi|731422679|ref|XP_010662206.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-21
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Csa1G043180 vs. NCBI nr
Match: gi|672184844|ref|XP_008812669.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Phoenix dactylifera])

HSP 1 Score: 108.6 bits (270), Expect = 3.3e-21
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

The following BLAST results are available for this feature:

BLAST of Csa1G043180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPBC_ARATH	2.3e-22	88.24	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana GN=...	[more]
RPAB4_BOVIN	1.3e-12	59.18	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR...	[more]
RPAB4_HUMAN	1.3e-12	59.18	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=PO...	[more]
RPAB4_MOUSE	1.3e-12	59.18	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Po...	[more]
RPAB4_SCHPO	3.7e-12	55.10	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyce...	[more]

BLAST of Csa1G043180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQM4_CUCSA	9.3e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043180 PE=4 SV=1	[more]
A0A022RDU6_ERYGU	3.5e-22	98.04	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017594mg PE=4 SV=1	[more]
V7C304_PHAVU	4.6e-22	98.04	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G138700g PE=4 SV=1	[more]
A0A067GN92_CITSI	4.6e-22	98.04	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035461mg PE=4 SV=1	[more]
V4UBY9_9ROSI	4.6e-22	98.04	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017429mg PE=4 SV=1	[more]

BLAST of Csa1G043180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41010.1	1.3e-23	88.24	DNA directed RNA polymerase, 7 kDa subunit	[more]
AT1G53690.1	1.0e-12	73.17	DNA directed RNA polymerase, 7 kDa subunit	[more]

BLAST of Csa1G043180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1000949640\|ref\|XP_015579873.1\|	1.3e-22	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communi...	[more]
gi\|848871798\|ref\|XP_012836463.1\|	5.1e-22	98.04	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe gut...	[more]
gi\|356531072\|ref\|XP_003534102.1\|	6.7e-22	98.04	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]	[more]
gi\|731422679\|ref\|XP_010662206.1\|	2.5e-21	96.08	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vitis vinifera]	[more]
gi\|672184844\|ref\|XP_008812669.1\|	3.3e-21	96.08	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Phoenix dactyli...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006591	RNAP_P/RPABC4
IPR006591	RNAP_P/RPABC4

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0000418	DNA-directed RNA polymerase IV complex
cellular_component	GO:0000419	DNA-directed RNA polymerase V complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU105298	cucumber EST collection version 3.0	transcribed_cluster
CU105494	cucumber EST collection version 3.0	transcribed_cluster
CU107281	cucumber EST collection version 3.0	transcribed_cluster
CU120756	cucumber EST collection version 3.0	transcribed_cluster
CU129146	cucumber EST collection version 3.0	transcribed_cluster
CU143829	cucumber EST collection version 3.0	transcribed_cluster
CU154196	cucumber EST collection version 3.0	transcribed_cluster
CU171843	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G043180.2	Csa1G043180.2	mRNA
Csa1G043180.1	Csa1G043180.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107281	CU107281	transcribed_cluster
CU129146	CU129146	transcribed_cluster
CU105494	CU105494	transcribed_cluster
CU105298	CU105298	transcribed_cluster
CU143829	CU143829	transcribed_cluster
CU154196	CU154196	transcribed_cluster
CU171843	CU171843	transcribed_cluster
CU120756	CU120756	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	GENE3D	G3DSA:2.20.28.30		coord: 7..51 score: 5.6
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	PFAM	PF03604	DNA_RNApol_7kD	coord: 10..41 score: 1.4
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	SMART	SM00659	rpolcxc3	coord: 8..51 score: 7.4
None	No IPR available	PRODOM	PD012151		coord: 14..51 score: 6.0
None	No IPR available	PANTHER	PTHR12056	DNA-DIRECTED RNA POLYMERASES I, II, AND III	coord: 1..51 score: 2.0
None	No IPR available	PANTHER	PTHR12056:SF2	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4	coord: 1..51 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G043180	Cla008376	Watermelon (97103) v1	cuwmB041
Csa1G043180	MELO3C002173	Melon (DHL92) v3.5.1	cumeB027
Csa1G043180	ClCG01G014780	Watermelon (Charleston Gray)	cuwcgB021
Csa1G043180	MELO3C002173.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G043180	Cla97C01G013780	Watermelon (97103) v2	cuwmbB010
Csa1G043180	CSPI01G07580	Wild cucumber (PI 183967)	cpicuB000
Csa1G043180	Cucsa.122310	Cucumber (Gy14) v1	cgycuB159
Csa1G043180	CmaCh18G001030	Cucurbita maxima (Rimu)	cmacuB390
Csa1G043180	CmaCh13G009580	Cucurbita maxima (Rimu)	cmacuB217
Csa1G043180	CmoCh13G009920	Cucurbita moschata (Rifu)	cmocuB202
Csa1G043180	Cp4.1LG20g01860	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G043180	Carg06658	Silver-seed gourd	carcuB0523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G043180	Cucumber (Gy14) v2	cgybcuB001
Csa1G043180	Silver-seed gourd	carcuB0415
Csa1G043180	Wax gourd	cuwgoB028
Csa1G043180	Cucurbita moschata (Rifu)	cmocuB380
Csa1G043180	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G043180	Bottle gourd (USVL1VR-Ls)	culsiB022