Cla97C01G013780 (gene) Watermelon (97103) v2
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGGTACACTTGTCGTGTTTACTGATTCCATGAGTCAAAATCTCCCGATTATTTAGGTTCTTAAGTTCTATTATCGGATGCATCTTTTAATCAGTATCAAGTTACTTTGATTATATTAAGACTAGGAATTTAGAAGTTTCTTAATTTGAGTCTGGATTTAGAACACTAAATATTCACCTATATGACTATACTTTTGGGGCTTGAAAACTGTAAAATTTGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATATTTTCTCTGGTTTTCTTTCTTTCTTTCTTTATTTATTTATTCTTTTTTGATCATGAATATGTCGTCTCTAAATATGATCTTTCCGTTAAAGATGGTTGGAATTTCGAATCTCTAGTCCAATAAGTTGTTTCAGACTTTCTCATATGGTTGACTCTAAATTTTATATGAAACAAGAAACAGAGGTGGGGTTTTTTATTTAATTGTAGAGTACAAAAGAGCCAGTGGGGTGAGCGAGCTTCCTAGTTCAGCAAATGAAAATAAGTTCCAACCATGGATACAACGATTTTCCATCATTGAGCTCAAAAGAAAAGAATGA ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAAGTACAAAAGAGCCAGTGGGGTGAGCGAGCTTCCTAGTTCAGCAAATGAAAATAAGTTCCAACCATGGATACAACGATTTTCCATCATTGAGCTCAAAAGAAAAGAATGA ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAAGTACAAAAGAGCCAGTGGGGTGAGCGAGCTTCCTAGTTCAGCAAATGAAAATAAGTTCCAACCATGGATACAACGATTTTCCATCATTGAGCTCAAAAGAAAAGAATGA MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRKYKRASGVSELPSSANENKFQPWIQRFSIIELKRKE
BLAST of Cla97C01G013780 vs. NCBI nr
Match: PON74893.1 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC [Parasponia andersonii]) HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18 Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Cla97C01G013780 vs. NCBI nr
Match: POO03436.1 (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC [Trema orientalis]) HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18 Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Cla97C01G013780 vs. NCBI nr
Match: XP_015579873.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis] >XP_016903136.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899390.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899391.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_022136997.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Momordica charantia] >XP_022954995.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022923649.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022994261.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001815.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001816.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023542174.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita pepo subsp. pepo] >KGN64215.1 hypothetical protein Csa_1G043180 [Cucumis sativus]) HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. NCBI nr
Match: EEF34914.1 (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative [Ricinus communis]) HSP 1 Score: 100.1 bits (248), Expect = 3.5e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. NCBI nr
Match: XP_021624767.1 (DNA-directed RNA polymerases II, IV and V subunit 12-like [Manihot esculenta]) HSP 1 Score: 99.8 bits (247), Expect = 4.6e-18 Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TrEMBL
Match: tr|A0A2P5G071|A0A2P5G071_9ROSA (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC OS=Trema orientalis OX=63057 GN=TorRG33x02_006410 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18 Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TrEMBL
Match: tr|A0A2P5DNN3|A0A2P5DNN3_PARAD (RNA polymerase archaeal subunit P/eukaryotic subunit RPABC OS=Parasponia andersonii OX=3476 GN=PanWU01x14_046100 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.0e-18 Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TrEMBL
Match: tr|A0A1S4E4H5|A0A1S4E4H5_CUCME (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Cucumis melo OX=3656 GN=LOC103482567 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TrEMBL
Match: tr|B9SNE7|B9SNE7_RICCO (DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide, putative OS=Ricinus communis OX=3988 GN=RCOM_0175610 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TrEMBL
Match: tr|A0A0A0LQM4|A0A0A0LQM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043180 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of Cla97C01G013780 vs. Swiss-Prot
Match: sp|Q9FLM8|NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.4e-18 Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0
BLAST of Cla97C01G013780 vs. Swiss-Prot
Match: sp|Q9C8M4|RPBCL_ARATH (DNA-directed RNA polymerase subunit 12-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB12L PE=3 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 9.7e-12 Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0
BLAST of Cla97C01G013780 vs. Swiss-Prot
Match: sp|Q3ZBC0|RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-10 Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Cla97C01G013780 vs. Swiss-Prot
Match: sp|P53803|RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-10 Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Cla97C01G013780 vs. Swiss-Prot
Match: sp|Q63871|RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2) HSP 1 Score: 65.9 bits (159), Expect = 2.4e-10 Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TAIR10
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit) HSP 1 Score: 92.4 bits (228), Expect = 1.3e-19 Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0
BLAST of Cla97C01G013780 vs. TAIR10
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit) HSP 1 Score: 70.5 bits (171), Expect = 5.4e-13 Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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