Carg06658 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06658
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC4
Location	Cucurbita_argyrosperma_scaffold_012 : 247900 .. 249453 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGGTACGGTTGTTGTGTTTATTGATTCCATGCTTCAAAATCTACTGAATATTTAGGTTTTCAAGTTTGGTTCTCGTGTGCATCCTTTAATCAGTGTATAGTTACTTTGATTACATTAAAACATCGGGAATCTGGAAGTTTATTGATTTGAGTCTATATTTTTCGCAATCGAATATACATATATATCTTAGAATCCAGTAGTTTGAGTATATATTTACAATACTTGCACTAAATATTCACCTATGTTTGGATCTTGAGTACTGTCGAATTGGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATATTTGTTTTTTTTTTCTTTTACTCATGAATGTGTCGTCTCTATGTATGATATTTCCGTTAAAGTTCTTAATTTCCACTGATGTTTGGAATTTTAAGTGTCGTCCATGAAGTTGTTTCTGACTTTCATATGCTTGGCCATAAATTTTCGATGAACTAAGAAACAGTGGCGGGATTTTTAATTAATAGTAGAGTAAAAAAAATTTGGTGGGGCGGGAGCTAGTGTAACGGCCCAATCCCACAGCTAGTAGATATTGTTATCTCTAGGCTTTCCCTTATGGCTTTCACTCAAGGTTTTTAAAACACGTCAGCTAGAGAGAGAGATTTCCACGTCGTTATAAAGAATGCTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACTCCCTTTAGTCACCATCCTTGCTGACACTTGTTCCTCTCTCCAATTGACATGAGATCTCATAGTCCACCTCTCTTCAAAGCCCCACGTCCTCACTGGCACTCGTTCTTCTCTACAATCGATGTGAGATCTCCAATTGACATGAGATCTCACGTCCTCACTAGTTAAGTCGATGAAAATAAGGTTAAACACTGTGATCGATGCTTGATAAGCTTTGGACAGTTCTGTATTTTGTTGGTCTAATTCTAAAGTTGATTGCATTGCGTTTGAGATCCCACTTGTTTGAGCGTTCCATATCCACTGCACCACTTGTCATAAGCTGATCAGCTACCTTTTCACTTCTTGTGTATTTATTTTGCATTCCCTTGATCACACTATCAACATCCATTCTAAATGCTGTCTTCTTCGTGATCTTTAACCTTCATTTCCCTTCTTCATAGTTCATTCGAAAATGGATCATCTCAAAATTCATGTTAGCATCGGTTTGTTTTGACGTTTACGTTGGTTGTAGTGATTTAGTATAATGTCCTAACGTGTTGTGTTTGAGCAAAATCTGTTCTCGATCTTTAGTAGTAATCGAATGAAAAAGTGCTTCTTGTGGTATCCCTCCTATGACTTAGGACTAAGCTTTGAGGGGAAGCCCAAAAGGGAAAACCTAAAGAGGACAATATTTGCTAGTAGTGGATCTGGGTCGTTACAAATGGTATCAAAGCCTGACAGCGGACGATGTGCCAGCCTTCTCGCTGTTCCTTAA

mRNA sequence

ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGACTAAGCTTTGAGGGGAAGCCCAAAAGGGAAAACCTAAAGAGGACAATATTTGCTAGTAGTGGATCTGGGTCGTTACAAATGGTATCAAAGCCTGACAGCGGACGATGTGCCAGCCTTCTCGCTGTTCCTTAA

Coding sequence (CDS)

ATGGATCCTCAACCCGAACCAGTGAGCTACATATGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGACTAAGCTTTGAGGGGAAGCCCAAAAGGGAAAACCTAAAGAGGACAATATTTGCTAGTAGTGGATCTGGGTCGTTACAAATGGTATCAAAGCCTGACAGCGGACGATGTGCCAGCCTTCTCGCTGTTCCTTAA

Protein sequence

MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGKPKRENLKRTIFASSGSGSLQMVSKPDSGRCASLLAVP

Homology

[Close]

BLAST of Carg06658 vs. NCBI nr
Match: XP_015579873.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis] >XP_016903136.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899390.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899391.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_022136997.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Momordica charantia] >XP_022954995.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022923649.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022994261.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001815.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001816.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023542174.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita pepo subsp. pepo] >KGN64215.1 hypothetical protein Csa_1G043180 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 6.0e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Carg06658 vs. NCBI nr
Match: XP_012836463.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata] >XP_012850578.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata] >EYU26259.1 hypothetical protein MIMGU_mgv1a017602mg [Erythranthe guttata] >EYU38219.1 hypothetical protein MIMGU_mgv1a017594mg [Erythranthe guttata])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Carg06658 vs. NCBI nr
Match: XP_021658712.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis])

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIIQYEAR 51

[Close]

BLAST of Carg06658 vs. NCBI nr
Match: KDP44492.1 (hypothetical protein JCGZ_16325 [Jatropha curcas])

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSF 49
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + F
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRSMQF 48

[Close]

BLAST of Carg06658 vs. NCBI nr
Match: XP_014507408.2 (DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata])

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 35 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 85

[Close]

BLAST of Carg06658 vs. TAIR10
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Carg06658 vs. TAIR10
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 2  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR 42
          D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

[Close]

BLAST of Carg06658 vs. Swiss-Prot
Match: sp|Q9FLM8|NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Carg06658 vs. Swiss-Prot
Match: sp|Q9C8M4|RPBCL_ARATH (DNA-directed RNA polymerase subunit 12-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB12L PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 2  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR 42
          D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

[Close]

BLAST of Carg06658 vs. Swiss-Prot
Match: sp|Q3ZBC0|RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Carg06658 vs. Swiss-Prot
Match: sp|P53803|RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Carg06658 vs. Swiss-Prot
Match: sp|Q63871|RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 5.3e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R + F+ +
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Carg06658 vs. TrEMBL
Match: tr|A0A1S4E4H5|A0A1S4E4H5_CUCME (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Cucumis melo OX=3656 GN=LOC103482567 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Carg06658 vs. TrEMBL
Match: tr|A0A0A0LQM4|A0A0A0LQM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043180 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Carg06658 vs. TrEMBL
Match: tr|A0A022RDU6|A0A022RDU6_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017594mg PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Carg06658 vs. TrEMBL
Match: tr|F6HCN6|F6HCN6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0115g00190 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-18
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSF 49
          MDPQPEPVSYICGDCG ENTLK GDVIQCRECGYRILYKKRTRRR+ F
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRRIEF 48

[Close]

BLAST of Carg06658 vs. TrEMBL
Match: tr|A0A1U8AQX5|A0A1U8AQX5_NELNU (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432 GN=LOC104603134 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRRLSFEGK 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRR + +E +
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

The following BLAST results are available for this feature:

BLAST of Carg06658 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_015579873.1	6.0e-19	88.24	DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis] >XP_0169...	[more]
XP_012836463.1	2.3e-18	86.27	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe gut...	[more]
XP_021658712.1	2.3e-18	86.27	DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis]	[more]
KDP44492.1	3.0e-18	91.67	hypothetical protein JCGZ_16325 [Jatropha curcas]	[more]
XP_014507408.2	3.0e-18	86.27	DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata...	[more]

BLAST of Carg06658 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41010.1	2.3e-20	78.43	DNA directed RNA polymerase, 7 kDa subunit	[more]
AT1G53690.1	1.7e-12	73.17	DNA directed RNA polymerase, 7 kDa subunit	[more]

BLAST of Carg06658 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FLM8\|NRPBC_ARATH	4.1e-19	78.43	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9C8M4\|RPBCL_ARATH	3.1e-11	73.17	DNA-directed RNA polymerase subunit 12-like protein OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q3ZBC0\|RPAB4_BOVIN	5.3e-11	55.10	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913...	[more]
sp\|P53803\|RPAB4_HUMAN	5.3e-11	55.10	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=96...	[more]
sp\|Q63871\|RPAB4_MOUSE	5.3e-11	55.10	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10...	[more]

BLAST of Carg06658 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4H5\|A0A1S4E4H5_CUCME	3.9e-19	88.24	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Cucumis melo OX=3656 GN=...	[more]
tr\|A0A0A0LQM4\|A0A0A0LQM4_CUCSA	3.9e-19	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043180 PE=4 SV=1	[more]
tr\|A0A022RDU6\|A0A022RDU6_ERYGU	1.5e-18	86.27	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017594mg PE...	[more]
tr\|F6HCN6\|F6HCN6_VITVI	1.5e-18	91.67	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_16s0115g00190 PE=4 SV=...	[more]
tr\|A0A1U8AQX5\|A0A1U8AQX5_NELNU	2.0e-18	86.27	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR029040	RPABC4/Spt4
IPR006591	RNAP_P/RPABC4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06658-RA	Carg06658-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	SMART	SM00659	rpolcxc3	coord: 8..51 e-value: 7.4E-19 score: 78.6
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	PFAM	PF03604	DNA_RNApol_7kD	coord: 10..41 e-value: 1.2E-16 score: 60.0
None	No IPR available	GENE3D	G3DSA:2.20.28.30		coord: 1..51 e-value: 8.7E-24 score: 84.6
None	No IPR available	PANTHER	PTHR12056	DNA-DIRECTED RNA POLYMERASES I, II, AND III	coord: 3..49
None	No IPR available	PRODOM	PD012151		coord: 14..51 e-value: 8.0E-12 score: 163.0
IPR029040	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	SUPERFAMILY	SSF63393	RNA polymerase subunits	coord: 7..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06658	Cla008376	Watermelon (97103) v1	carwmB0490
Carg06658	Csa1G043180	Cucumber (Chinese Long) v2	carcuB0523
Carg06658	MELO3C002173	Melon (DHL92) v3.5.1	carmeB0499
Carg06658	ClCG01G014780	Watermelon (Charleston Gray)	carwcgB0479
Carg06658	CSPI01G07580	Wild cucumber (PI 183967)	carcpiB0531
Carg06658	Cucsa.122310	Cucumber (Gy14) v1	carcgyB0568
Carg06658	CmaCh18G001030	Cucurbita maxima (Rimu)	carcmaB0692
Carg06658	CmaCh13G009580	Cucurbita maxima (Rimu)	carcmaB0690
Carg06658	CmoCh13G009920	Cucurbita moschata (Rifu)	carcmoB0671
Carg06658	Cp4.1LG20g01860	Cucurbita pepo (Zucchini)	carcpeB0696
Carg06658	MELO3C002173.2	Melon (DHL92) v3.6.1	carmedB0504
Carg06658	CsaV3_1G007550	Cucumber (Chinese Long) v3	carcucB0529
Carg06658	Cla97C01G013780	Watermelon (97103) v2	carwmbB0516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06658	Silver-seed gourd	carcarB411
Carg06658	Cucumber (Gy14) v2	carcgybB0500
Carg06658	Cucurbita moschata (Rifu)	carcmoB0673
Carg06658	Cucurbita pepo (Zucchini)	carcpeB0694
Carg06658	Bottle gourd (USVL1VR-Ls)	carlsiB447
Carg06658	Wax gourd	carwgoB0600