CsaV3_1G007550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G007550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC4
Locationchr1 : 4803564 .. 4805926 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGGTTTGTGATTTATTTTTAAACCAACGACGAGCCCCCTTCCCTCCGTCTCTCTCATCTCGCATCCTCTCATTCTCTTTCGTCTTCGTCTTCGTCTTCGTCTCCTCTTCCTCACCTTTGACTAAAATTAATATAAGAACCAAAAAGTTATTTTAACATAAAAAAGAAGGGAAAAACCCTACTACACCTTCTCCTCCCTTTTATTTTTGTTTGATTTTTCCCTCACCCATCATTATTCGTATCGTCCTTGCAGCGGTAGGTACGCGCCGATTGTTTTTTCTCTCCTATCCTTCCGCCATCGCGGTCGCCGGTCGTCGGCACATTCTCACCCCCATTTTTCTTTATTCTCATTGTTCCGTTGATGCTTGTTTCTTACTTGTGTGTGCAATAATTGGTTTGCAGGAAGATTTTTGAAGCTTGACTCATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGGTATACTTGTTGTGTTTTTACGGATTTCGGGATTGAATATCTCCCGATTATTTAGGTTCTTTAGTTATGTTATCGGATGCATCTTTTAACAAGTATCTAGTTACTTTGATTATATTAAGACTGGGAATTTAGAAGTTTCTTGGTTAGAATAATTGCTCTAAATATACGCGTATATATATGACTATGTTTGGGAATTGAGAGATGTAAAATTTGTGTAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATACTTCTTCTGATTTTGGTGGTTATTATTGTTATTATTATTTTGTTCATGAATATGTCGTCTGTCAATTGAACATTCTGTTAAAGATGATTGGAATTTTGAATCTCATCAAATAAGTTGTCTTAGATTTTCATATGTTTGATTATAAATCTTATATGGAACAAGAAACATAGATGAGCTATTTGGTATGAGTAGATATTGAAGAAGTGTCACACATGCGGGTCAAACTCTGAGACTGGCGGCTTTGGCTGGTTTTGCATATAGGCATGGTTGGGAGGTTTTAAAATGGTTGTAATCACTTTATCATCTTCGTAGATCACTCCAAAACATGTTTTGCTCAACCAAAATCAACTTGACTGTTTGAAAGTCACATTTAAAAGAATTAAATCAAAAGGTAAATTGATCTTGAACTATAAAAGACTTGTTTTGGAGTGATTTTGAGCTCACCAAAACTGACTTTAACTCTATCAAAATCATCTTCTTGTGTCGAGAACTCTATATCCACTTCACTACTTTGCACGAGTTGAATGATCGGCTACGTTTTCACTTATTTTTTTCTGTTTGAAAATCATTTGATCCACTCTATAACATCCATACTCAATGCTGTTTTCTTCCTGGTTAAATCTTATTTACCTTCTTTGTAATTCATTTGAAGATTCTGAGTAATGGGTAATCTAAAACAACTATTTTATTGACTTAGTTTGTTCTGAAGTTTATAGATTGCACATATATCCAACTGTTAATTGGCAGGATGGTTGTAGTTTGGGTAATATACTGTCACAACAGGATGTATTTCAGCAGAATCTATTATACTTGACCTAAGTCGATAATTGACTGAAAAATTTGTTTCTTGGGGTATCCTTGTAATCTTATATGACTTGGAATGCTCTCTTACTATAAGTCTTGAGATTAAGTTTAGATTCTCTCTTTATGGATGTTATTGGAGTCTATTCTCTTAGTTTAGTTTTTTCAATATTTTTGTTATATGGGTCAATTTGCATTACTTTCTGTGTCCTTGATATTTATTTGCTTCTTCCAAATTTGAAGTCCAATCCAATTCTTGCCTATTACTGCAGTTGTTCAGTACGAGGCCCGCTGAAATGCTTATTCTTGCAATGGACTTCTACTAGTATCATGAATATTTTGTAAGTTTCTTTTAGGAAAACAAAAACAATACTCGATATGGATTAAGGACTTGCTGTAGTACAAACATGTTGATAATGCTGCTA

mRNA sequence

ATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA

Coding sequence (CDS)

ATGGATCCTCAACCCGAGCCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTACGAGGCCCGCTGA

Protein sequence

MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Homology
[Close]
BLAST of CsaV3_1G007550 vs. NCBI nr
Match: XP_015579873.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis] >XP_016903136.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899390.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_016899391.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Cucumis melo] >XP_022136997.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Momordica charantia] >XP_022954995.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022923649.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita moschata] >XP_022994261.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001815.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023001816.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita maxima] >XP_023542174.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cucurbita pepo subsp. pepo] >KGN64215.1 hypothetical protein Csa_1G043180 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. NCBI nr
Match: XP_012836463.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata] >XP_012850578.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe guttata] >EYU26259.1 hypothetical protein MIMGU_mgv1a017602mg [Erythranthe guttata] >EYU38219.1 hypothetical protein MIMGU_mgv1a017594mg [Erythranthe guttata])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. NCBI nr
Match: XP_014507408.2 (DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata])

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 35 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 85

[Close]
BLAST of CsaV3_1G007550 vs. NCBI nr
Match: XP_003534102.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_003548293.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_006448405.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus clementina] >XP_007152540.1 hypothetical protein PHAVU_004G138700g [Phaseolus vulgaris] >XP_010265372.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279451.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279452.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_012093117.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_017439147.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna angularis] >XP_018849286.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_018827042.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_020212630.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cajanus cajan] >XP_020532481.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_024022128.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024022129.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024467616.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Populus trichocarpa] >XP_024950019.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus sinensis] >ACU15492.1 unknown [Glycine max] >ESR61645.1 hypothetical protein CICLE_v10017429mg [Citrus clementina] >ESW24534.1 hypothetical protein PHAVU_004G138700g [Phaseolus vulgaris] >KDO76902.1 hypothetical protein CISIN_1g035461mg [Citrus sinensis] >KHN24498.1 DNA-directed RNA polymerases I, II, and III subunit RPABC4 [Glycine soja] >KRH09382.1 hypothetical protein GLYMA_16G212700 [Glycine max] >KRH38875.1 hypothetical protein GLYMA_09G164200 [Glycine max] >BAU02571.1 hypothetical protein VIGAN_11212200 [Vigna angularis var. angularis] >OAY39281.1 hypothetical protein MANES_10G081900 [Manihot esculenta] >OIV97068.1 hypothetical protein TanjilG_14613 [Lupinus angustifolius] >OVA05531.1 RNA polymerase archaeal subunit P/eukaryotic subunit RPC10 [Macleaya cordata])

HSP 1 Score: 111.3 bits (277), Expect = 9.9e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. NCBI nr
Match: XP_021658712.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis])

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-21
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRI+QYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIIQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TAIR10
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 105.5 bits (262), Expect = 9.9e-24
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TAIR10
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit)

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-13
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 2  DPQPEP-VSYICGDCGMENTLKQGDVIQCRECGYRILYKKR 42
          D QPE  V Y+CGDCG EN LK+GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

[Close]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match: sp|Q9FLM8|NRPBC_ARATH (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match: sp|Q3ZBC0|RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-13
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match: sp|P53803|RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-13
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match: sp|Q63871|RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.8e-13
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match: sp|P48011|RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 0 

Query: 3  PQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63

[Close]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match: tr|A0A1S4E4H5|A0A1S4E4H5_CUCME (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Cucumis melo OX=3656 GN=LOC103482567 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match: tr|A0A0A0LQM4|A0A0A0LQM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043180 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match: tr|A0A022RDU6|A0A022RDU6_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017594mg PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCG ENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGQENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match: tr|A0A1U8AQX5|A0A1U8AQX5_NELNU (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432 GN=LOC104603134 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match: tr|C6T1P2|C6T1P2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100500417 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 1  MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSYICGDCGMENTLK GDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

The following BLAST results are available for this feature:
BLAST of CsaV3_1G007550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015579873.12.0e-22100.00DNA-directed RNA polymerases II, IV and V subunit 12 [Ricinus communis] >XP_0169... [more]
XP_012836463.17.6e-2298.04PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Erythranthe gut... [more]
XP_014507408.29.9e-2298.04DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata... [more]
XP_003534102.19.9e-2298.04DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_003548293... [more]
XP_021658712.11.3e-2196.08DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis][more]
BLAST of CsaV3_1G007550 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41010.19.9e-2488.24DNA directed RNA polymerase, 7 kDa subunit[more]
AT1G53690.17.8e-1373.17DNA directed RNA polymerase, 7 kDa subunit[more]
BLAST of CsaV3_1G007550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FLM8|NRPBC_ARATH1.8e-2288.24DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=... [more]
sp|Q3ZBC0|RPAB4_BOVIN9.8e-1359.18DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913... [more]
sp|P53803|RPAB4_HUMAN9.8e-1359.18DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=96... [more]
sp|Q63871|RPAB4_MOUSE9.8e-1359.18DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10... [more]
sp|P48011|RPAB4_SCHPO2.8e-1255.10DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyce... [more]
BLAST of CsaV3_1G007550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E4H5|A0A1S4E4H5_CUCME1.3e-22100.00DNA-directed RNA polymerases II, IV and V subunit 12 OS=Cucumis melo OX=3656 GN=... [more]
tr|A0A0A0LQM4|A0A0A0LQM4_CUCSA1.3e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043180 PE=4 SV=1[more]
tr|A0A022RDU6|A0A022RDU6_ERYGU5.0e-2298.04Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a017594mg PE... [more]
tr|A0A1U8AQX5|A0A1U8AQX5_NELNU6.6e-2298.04DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432... [more]
tr|C6T1P2|C6T1P2_SOYBN6.6e-2298.04Uncharacterized protein OS=Glycine max OX=3847 GN=100500417 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed RNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR006591RNAP_P/RPABC4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription from RNA polymerase II promoter
cellular_component GO:0005730 nucleolus
cellular_component GO:0005665 DNA-directed RNA polymerase II, core complex
cellular_component GO:0000418 DNA-directed RNA polymerase IV complex
cellular_component GO:0000419 DNA-directed RNA polymerase V complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007550.1CsaV3_1G007550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 8..51
e-value: 7.4E-25
score: 98.6
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 10..41
e-value: 3.1E-17
score: 61.8
NoneNo IPR availableGENE3DG3DSA:2.20.28.30coord: 1..51
e-value: 1.9E-27
score: 96.3
NoneNo IPR availablePANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 3..51
NoneNo IPR availablePRODOMPD012151coord: 14..51
e-value: 6.0E-14
score: 182.0
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILYSSF63393RNA polymerase subunitscoord: 7..51