Csa1G043070 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G043070
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	BolA-like protein, expressed; contains IPR002634 (BolA protein)
Location	Chr1 : 4716148 .. 4718260 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTTATGAGTTTTAAAAATTGTGCTGCTTTTACCGATTTACCAAAAATTTAGATTTACTTCTCACTCCTCAACACTGCTTACAAAGACGAAAGGTTCGTGCCGAATTTGCGTCGCATTGAAGCAGGGCATTTCCAACGGCCGGTCGTCTCCGAACGTCGAGGGGGCTGTTTCGTGTAACGCCGGTCAGTACTACGCGTCAATCAACAATATTTATTCTCATAATTTTTCAATGATGTCTCATCAATTTTCGAATTTGCTCTTCCCCTAGTTCGTTCGTTGATGATAAATTCTTTTGTTATTCGAATCAGAACTGAGAAATGTAAAATATAGATTCTACAATTTTACCATTGAATCATTCAATTCTCTGAAACTGTGTCTTCTTAAGGATGCAAATTTTGTAATTCGAAAAACAGGAATCGCAGGGGATCGTTCAGACATTTTATCGAACAGTATGGCTTCACGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGAATGAAGACGAAGTTGCAGTCAGCACTATCAGCGAGTTTATTGGAAATTGAGGACGTTTCGCACCAGCATGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAGACTCATTTCAATGTGAAGATTGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATGCTTTGGCTGAAGAGCTTCAATCTGGGTTACATGCAATTTCAATAGTGGCAAAAACTCCACAAGAAACTGGAGCAAAATGATTTTCAGATTCGCCTCACAATGTGAGTTTTCAAATGATTTCTATAGTTTAGAATTGCAATGATTTAGGCATTTATGCTGGGTCTTGTATGATGTATATGCTACTTATCAATTTCAAGAGATGAGTTAAAGCTTTAAATGCCATGGAAAATTTTTTCAGCTTGTTAATTACAACTGGGAAGACACTGTATTGTAGGATAAATGCTGCTCAAAGAAAAAAAGATACATTTTCACTTATTAGATGCCTTGATTGTGGTGCTTCTATCATATTTGACTAGATTTGTTATTTTAGACTAGTTCTTATTCAACTGAATTGACTTATCTTGGATCTAAAAGTACACTATTTTGTTTTATTTTCTTTATGCATATAACATTTTCATTATAATACATGTTCTTCGATTAAAGTTCAACCCATGCCTGCAATAGTGAGGAGTAGTAGAAATTTAACTTGATTAGTTGTTTGTAATTTCACTTCAAAAGCTTCCTTTCTACTAGAGCTTGATCTAAATTCATATGTTTCAACCACTGTTATCTGTCATCTTTCATGAAACAGACTCATTTACCACTCACGAATGACTTATCATATTGAGAATCTATTACTCCAAACTTACGATGCAAAATCGACCTTACTTGAACATGATCTATTCTATAAGTTGTATAATTGTGTTCTTGAGTTCATCTAAATACGGGTTCATGTGATGGTCACAATTTAATCCACTTGGATAATATTTTTGTCATGTTGAAACCTATTACTCCCTCATTGACAGTGCATAAACATCTAGTAAGCATCTAAATAATGATTCATGTGATTTGTCACCTGTTCACTTCACTGAAACAGTATCATGAAATTCATCTATAAATAACTTGTCATATTGGAAATTTGTTACTCCACCCATTATGTGACAAATAGTAAGGATTCAAATAAGGGTTCGTGTAACGGTTACACAAGGTAATCTTCTAAAGGCCAAATTCCATGATTAGCACATGTAGAATCGAATACCTTCATGCATCATCATTGAAATCTCCCTCGATTACATACCTTATCAAAAAGATCTATTCTGTGCTTAAACATCAATTTGCTCCCATTTTAAGTCTCAAATGTTGGATTTTCTTTTTATCGTGCAGAGTGGGCCAAATTGTGAAGCCAAGAAAGGAGGAGTGAACTTTACCTCTCAACTCATAGGAATTTCGAAAATGTATGTGTATACTCGAGGTTGTTGTCTTTCTAATTTGTTCTCCAAAAAAATGTTAAAGACCAAATACATTGTGGCTCCTTACAAATACTTCTAGCTTTGCTGCTCTCCCTTGATTATAAAGATAGACTTCATGTCTTGAGTTGATTCTGAATTTAG

mRNA sequence

ATGGCTTCACGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGAATGAAGACGAAGTTGCAGTCAGCACTATCAGCGAGTTTATTGGAAATTGAGGACGTTTCGCACCAGCATGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAGACTCATTTCAATGTGAAGATTGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATGCTTTGGCTGAAGAGCTTCAATCTGGGTTACATGCAATTTCAATAGTGGCAAAAACTCCACAAGAAACTGGAGCAAAATGA

Coding sequence (CDS)

ATGGCTTCACGAGGGGCAAACGTGGTGCTATCGAGGGCTAATAGAATGAAGACGAAGTTGCAGTCAGCACTATCAGCGAGTTTATTGGAAATTGAGGACGTTTCGCACCAGCATGCTGGGCATGCGGCTGTGAAAGGCAGCGCTGGAGAGACTCATTTCAATGTGAAGATTGTGTCTCCAAAATTTGAAGGGCAGAGCCTTGTGAAGCGCCATAGAATGGTGTATGATGCTTTGGCTGAAGAGCTTCAATCTGGGTTACATGCAATTTCAATAGTGGCAAAAACTCCACAAGAAACTGGAGCAAAATGA

Protein sequence

MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK*

Homology

[Close]

BLAST of Csa1G043070 vs. Swiss-Prot
Match: SUFE1_ARATH (SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE1 PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-27
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   GANVVL--SRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSA---GETHFNVKIVS 64
           G+NVV   SR  R++ KL+  L    LE+EDVS+QHAGHAAV+GSA   GETHFN++IVS
Sbjct: 272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query: 65  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQE 99
             F+G+SLVKRHR++YD L +EL+SGLHA+SIVAKTP E
Sbjct: 332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370

[Close]

BLAST of Csa1G043070 vs. Swiss-Prot
Match: BOLA1_ARATH (Protein BOLA1, chloroplastic OS=Arabidopsis thaliana GN=BOLA1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.7e-25
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 6   ANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAG-ETHFNVKIVSPKFEG 65
           +  + +RA+RM+ KLQ  L    L IEDVS+QHAGHA +KG    ETHFNVKIVS  FEG
Sbjct: 62  SGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEG 121

Query: 66  QSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 103
            +LVKRHR+VY  L EEL +GLHA+SIV+KTP E+ +K
Sbjct: 122 MNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159

[Close]

BLAST of Csa1G043070 vs. Swiss-Prot
Match: BOLA1_PONAB (BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 3   SRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKF 62
           S G+  V      ++TKL+ ALS  +LE+ + S    GHA   GS  ETHF V +VS +F
Sbjct: 23  SAGSGAVGPVEAAIRTKLEQALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRF 82

Query: 63  EGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETG 101
           EG S ++RHR+++ ALAEEL   +HA++I A+TP + G
Sbjct: 83  EGLSPLQRHRLIHAALAEELAGPVHALAIQARTPAQWG 115

[Close]

BLAST of Csa1G043070 vs. Swiss-Prot
Match: BOLA1_MOUSE (BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-13
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1


Query: 16  MKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKFEGQSLVKRHRMVY 75
           ++ KL+ ALS  +LE+ + S    GHA   GS  ETHF V +VS +FEG S ++RHR+V+
Sbjct: 36  IRAKLEQALSPEVLELRNES---GGHAVPAGS--ETHFRVAVVSSRFEGMSPLQRHRLVH 95

Query: 76  DALAEELQSGLHAISIVAKTPQE 99
           +AL+EEL   +HA++I AKTP +
Sbjct: 96  EALSEELAGPVHALAIQAKTPAQ 113

[Close]

BLAST of Csa1G043070 vs. Swiss-Prot
Match: BOLA1_HUMAN (BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-13
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 3   SRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKF 62
           S G+  +      ++TKL+ ALS  +LE+ + S    GHA   GS  ETHF V +VS +F
Sbjct: 23  SAGSGAIGPVEAAIRTKLEEALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRF 82

Query: 63  EGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQE 99
           EG S ++RHR+V+ ALAEEL   +HA++I A+TP +
Sbjct: 83  EGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQ 113

[Close]

BLAST of Csa1G043070 vs. TrEMBL
Match: A0A0A0LT67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043070 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.5e-48
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 103
           KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Csa1G043070 vs. TrEMBL
Match: B9I4Y9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03380g PE=3 SV=2)

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-38
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MASRG-ANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGS-AGETHFNVKIV 60
           M SRG AN++LSRA+RMK KLQS+L ASLLEIEDVSHQHAGHAA+KG+ AGETHFNVKIV
Sbjct: 1   MGSRGVANMILSRASRMKAKLQSSLEASLLEIEDVSHQHAGHAAMKGNTAGETHFNVKIV 60

Query: 61  SPKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 102
           SPKF+G +LVKRHR+VYDAL+EELQSGLHA+SIVAKTPQE GA
Sbjct: 61  SPKFDGLNLVKRHRLVYDALSEELQSGLHALSIVAKTPQEEGA 103

[Close]

BLAST of Csa1G043070 vs. TrEMBL
Match: W1PMW2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00029p00039100 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-36
Identity = 83/100 (83.00%), Postives = 90/100 (90.00%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60
           MASR AN +LSRA+RMK KLQ+AL AS+LEIEDVS+QHAGHA VKG A ETHFNVKIVSP
Sbjct: 1   MASR-ANAMLSRASRMKQKLQTALEASVLEIEDVSYQHAGHAGVKGDATETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETG 101
           KFEGQSLVKRHR+VYD L EELQSGLHA+SIVAKTPQE G
Sbjct: 61  KFEGQSLVKRHRLVYDLLTEELQSGLHALSIVAKTPQEVG 99

[Close]

BLAST of Csa1G043070 vs. TrEMBL
Match: A0A0S3TCF8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G214500 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-36
Identity = 81/102 (79.41%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAG-ETHFNVKIVS 60
           M SRGA VVLSRANR++TKLQSAL A++LE++DVSHQHAGHAAV+GS+  ETHFNVKIVS
Sbjct: 1   MGSRGATVVLSRANRIRTKLQSALEATVLEVDDVSHQHAGHAAVRGSSDKETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 102
            KFEGQSLVKRHR+VYD LA+ELQSGLHA+SIVAKTP ET +
Sbjct: 61  SKFEGQSLVKRHRLVYDLLADELQSGLHALSIVAKTPNETSS 102

[Close]

BLAST of Csa1G043070 vs. TrEMBL
Match: A0A0L9VHX6_PHAAN (Eukaryotic translation initiation factor 3 subunit J OS=Phaseolus angularis GN=LR48_Vigan10g047000 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-36
Identity = 81/100 (81.00%), Postives = 92/100 (92.00%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAG-ETHFNVKIVS 60
           M SRGA VVLSRANR++TKLQSAL A++LE++DVSHQHAGHAAV+GS+  ETHFNVKIVS
Sbjct: 1   MGSRGATVVLSRANRIRTKLQSALEATVLEVDDVSHQHAGHAAVRGSSDKETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQET 100
            KFEGQSLVKRHR+VYD LA+ELQSGLHA+SIVAKTP ET
Sbjct: 61  SKFEGQSLVKRHRLVYDLLADELQSGLHALSIVAKTPNET 100

[Close]

BLAST of Csa1G043070 vs. TAIR10
Match: AT4G26500.1 (AT4G26500.1 chloroplast sulfur E)

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-28
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 1


Query: 5   GANVVL--SRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSA---GETHFNVKIVS 64
           G+NVV   SR  R++ KL+  L    LE+EDVS+QHAGHAAV+GSA   GETHFN++IVS
Sbjct: 272 GSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVS 331

Query: 65  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQE 99
             F+G+SLVKRHR++YD L +EL+SGLHA+SIVAKTP E
Sbjct: 332 DAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAE 370

[Close]

BLAST of Csa1G043070 vs. TAIR10
Match: AT1G55805.1 (AT1G55805.1 BolA-like family protein)

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-26
Identity = 59/98 (60.20%), Postives = 71/98 (72.45%), Query Frame = 1


Query: 6   ANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAG-ETHFNVKIVSPKFEG 65
           +  + +RA+RM+ KLQ  L    L IEDVS+QHAGHA +KG    ETHFNVKIVS  FEG
Sbjct: 62  SGAIENRASRMREKLQKELEPVELVIEDVSYQHAGHAGMKGRTDDETHFNVKIVSKGFEG 121

Query: 66  QSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 103
            +LVKRHR+VY  L EEL +GLHA+SIV+KTP E+ +K
Sbjct: 122 MNLVKRHRLVYHLLREELDTGLHALSIVSKTPSESPSK 159

[Close]

BLAST of Csa1G043070 vs. TAIR10
Match: AT5G17560.1 (AT5G17560.1 BolA-like family protein)

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07
Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 1


Query: 16  MKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKFEGQSLVKRHRMVY 75
           M+ K++  L+A  + + D+S                H  + +VS  FEGQS V R RMVY
Sbjct: 105 MELKIKEQLNAESVTVTDMS------------GDGRHVCINVVSSAFEGQSAVNRQRMVY 164

Query: 76  DALAEELQSGLHAI-SIVAKTPQE 99
            A+ EELQ+ +HA+  +  KTP E
Sbjct: 165 KAIWEELQNVVHAVDQMTTKTPSE 176

[Close]

BLAST of Csa1G043070 vs. TAIR10
Match: AT5G09830.1 (AT5G09830.1 BolA-like family protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.5e-07
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 15 RMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSPKFEGQSLVKRHRMV 74
          +++  L S L    LE+ D+S          G  G + F V++VS +FEG+ L++RHRMV
Sbjct: 6  QVEASLTSKLKPIHLEVIDIS----------GGCGSS-FEVEVVSEQFEGKRLLERHRMV 65

Query: 75 YDALAEELQSGLHAISI-VAKTPQE 99
            AL EE++  +HA+SI  A+TPQ+
Sbjct: 66 NAALEEEMKE-IHALSIKKAQTPQQ 78

[Close]

BLAST of Csa1G043070 vs. NCBI nr
Match: gi|700209108|gb|KGN64204.1| (hypothetical protein Csa_1G043070 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60
           MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP
Sbjct: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAGETHFNVKIVSP 60

Query: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 103
           KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK
Sbjct: 61  KFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGAK 102

[Close]

BLAST of Csa1G043070 vs. NCBI nr
Match: gi|743919336|ref|XP_011003692.1| (PREDICTED: sufE-like protein, chloroplastic [Populus euphratica])

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 88/103 (85.44%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MASRG-ANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGS-AGETHFNVKIV 60
           M SRG AN+VLSRA+RMK KLQS+L ASLLEIEDVSHQHAGHAAVKG+ AGETHFNVKIV
Sbjct: 1   MGSRGVANMVLSRASRMKAKLQSSLEASLLEIEDVSHQHAGHAAVKGNTAGETHFNVKIV 60

Query: 61  SPKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 102
           SPKF+G +LVKRHR+VYDALAEELQSGLHA+SIVAKTPQE GA
Sbjct: 61  SPKFDGLNLVKRHRLVYDALAEELQSGLHALSIVAKTPQEEGA 103

[Close]

BLAST of Csa1G043070 vs. NCBI nr
Match: gi|1012173015|ref|XP_015966216.1| (PREDICTED: protein BOLA1, chloroplastic [Arachis duranensis])

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-38
Identity = 86/104 (82.69%), Postives = 99/104 (95.19%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSA-GETHFNVKIVS 60
           MASRGA+VVLSRANR+K+KLQ+AL A++LE++DVS+QHAGHAAVKG++  ETHFNVKIVS
Sbjct: 1   MASRGASVVLSRANRIKSKLQTALEATVLEVDDVSYQHAGHAAVKGNSDNETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQE-TGAK 103
           PKF+GQSLVKRHRMVYD LA+ELQSGLHAISIVAKTPQE TGAK
Sbjct: 61  PKFDGQSLVKRHRMVYDLLADELQSGLHAISIVAKTPQETTGAK 104

[Close]

BLAST of Csa1G043070 vs. NCBI nr
Match: gi|566196591|ref|XP_002318341.2| (hypothetical protein POPTR_0012s03380g [Populus trichocarpa])

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 1


Query: 1   MASRG-ANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGS-AGETHFNVKIV 60
           M SRG AN++LSRA+RMK KLQS+L ASLLEIEDVSHQHAGHAA+KG+ AGETHFNVKIV
Sbjct: 1   MGSRGVANMILSRASRMKAKLQSSLEASLLEIEDVSHQHAGHAAMKGNTAGETHFNVKIV 60

Query: 61  SPKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 102
           SPKF+G +LVKRHR+VYDAL+EELQSGLHA+SIVAKTPQE GA
Sbjct: 61  SPKFDGLNLVKRHRLVYDALSEELQSGLHALSIVAKTPQEEGA 103

[Close]

BLAST of Csa1G043070 vs. NCBI nr
Match: gi|965617442|dbj|BAU02592.1| (hypothetical protein VIGAN_11214500 [Vigna angularis var. angularis])

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 81/102 (79.41%), Postives = 93/102 (91.18%), Query Frame = 1


Query: 1   MASRGANVVLSRANRMKTKLQSALSASLLEIEDVSHQHAGHAAVKGSAG-ETHFNVKIVS 60
           M SRGA VVLSRANR++TKLQSAL A++LE++DVSHQHAGHAAV+GS+  ETHFNVKIVS
Sbjct: 1   MGSRGATVVLSRANRIRTKLQSALEATVLEVDDVSHQHAGHAAVRGSSDKETHFNVKIVS 60

Query: 61  PKFEGQSLVKRHRMVYDALAEELQSGLHAISIVAKTPQETGA 102
            KFEGQSLVKRHR+VYD LA+ELQSGLHA+SIVAKTP ET +
Sbjct: 61  SKFEGQSLVKRHRLVYDLLADELQSGLHALSIVAKTPNETSS 102

The following BLAST results are available for this feature:

BLAST of Csa1G043070 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SUFE1_ARATH	6.1e-27	63.64	SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE...	[more]
BOLA1_ARATH	9.7e-25	60.20	Protein BOLA1, chloroplastic OS=Arabidopsis thaliana GN=BOLA1 PE=1 SV=1	[more]
BOLA1_PONAB	1.0e-13	44.90	BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1	[more]
BOLA1_MOUSE	2.9e-13	48.19	BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1	[more]
BOLA1_HUMAN	3.8e-13	44.79	BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1	[more]

BLAST of Csa1G043070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT67_CUCSA	7.5e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043070 PE=3 SV=1	[more]
B9I4Y9_POPTR	9.1e-38	82.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s03380g PE=3 SV=2	[more]
W1PMW2_AMBTC	1.0e-36	83.00	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00029p00039100 PE=3 SV=...	[more]
A0A0S3TCF8_PHAAN	1.0e-36	79.41	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G214500 PE=...	[more]
A0A0L9VHX6_PHAAN	1.3e-36	81.00	Eukaryotic translation initiation factor 3 subunit J OS=Phaseolus angularis GN=L...	[more]

BLAST of Csa1G043070 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26500.1	3.4e-28	63.64	chloroplast sulfur E	[more]
AT1G55805.1	5.5e-26	60.20	BolA-like family protein	[more]
AT5G17560.1	3.3e-07	36.90	BolA-like family protein	[more]
AT5G09830.1	7.5e-07	40.00	BolA-like family protein	[more]

BLAST of Csa1G043070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209108\|gb\|KGN64204.1\|	1.1e-47	100.00	hypothetical protein Csa_1G043070 [Cucumis sativus]	[more]
gi\|743919336\|ref\|XP_011003692.1\|	2.0e-38	85.44	PREDICTED: sufE-like protein, chloroplastic [Populus euphratica]	[more]
gi\|1012173015\|ref\|XP_015966216.1\|	4.5e-38	82.69	PREDICTED: protein BOLA1, chloroplastic [Arachis duranensis]	[more]
gi\|566196591\|ref\|XP_002318341.2\|	1.3e-37	82.52	hypothetical protein POPTR_0012s03380g [Populus trichocarpa]	[more]
gi\|965617442\|dbj\|BAU02592.1\|	1.4e-36	79.41	hypothetical protein VIGAN_11214500 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002634	BolA
IPR002634	BolA
IPR002634	BolA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0001732	formation of cytoplasmic translation initiation complex
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003743	translation initiation factor activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU098810	cucumber EST collection version 3.0	transcribed_cluster
CU104920	cucumber EST collection version 3.0	transcribed_cluster
CU177875	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G043070.3	Csa1G043070.3	mRNA
Csa1G043070.2	Csa1G043070.2	mRNA
Csa1G043070.1	Csa1G043070.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU104920	CU104920	transcribed_cluster
CU098810	CU098810	transcribed_cluster
CU177875	CU177875	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002634	BolA protein	PIR	PIRSF003113	BolA	coord: 1..102 score: 1.7
IPR002634	BolA protein	PFAM	PF01722	BolA	coord: 20..98 score: 1.2
IPR002634	BolA protein	unknown	SSF82657	BolA-like	coord: 11..99 score: 6.41
None	No IPR available	GENE3D	G3DSA:3.30.70.1500		coord: 12..95 score: 4.4
None	No IPR available	PANTHER	PTHR12735	BOLA-LIKE PROTEIN-RELATED	coord: 1..99 score: 4.6
None	No IPR available	PANTHER	PTHR12735:SF21	BOLA LIKE PROTEIN	coord: 1..99 score: 4.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G043070	Cla008389	Watermelon (97103) v1	cuwmB041
Csa1G043070	MELO3C002161	Melon (DHL92) v3.5.1	cumeB027
Csa1G043070	ClCG01G014880	Watermelon (Charleston Gray)	cuwcgB021
Csa1G043070	Lsi02G002670	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G043070	MELO3C002161.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G043070	Cla97C01G013900	Watermelon (97103) v2	cuwmbB010
Csa1G043070	Bhi08G001106	Wax gourd	cuwgoB028
Csa1G043070	CSPI01G07470	Wild cucumber (PI 183967)	cpicuB000
Csa1G043070	Cucsa.122210	Cucumber (Gy14) v1	cgycuB159
Csa1G043070	Cp4.1LG09g10990	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G043070	CsGy1G007340	Cucumber (Gy14) v2	cgybcuB001
Csa1G043070	Carg06649	Silver-seed gourd	carcuB0523

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G043070	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G043070	Silver-seed gourd	carcuB0415
Csa1G043070	Cucurbita maxima (Rimu)	cmacuB217
Csa1G043070	Cucurbita maxima (Rimu)	cmacuB390
Csa1G043070	Cucurbita moschata (Rifu)	cmocuB202
Csa1G043070	Cucurbita moschata (Rifu)	cmocuB380