Csa1G042900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G042900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Lipid transfer protein, putative; contains IPR016140 (Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain)
Location	Chr1 : 4567075 .. 4568054 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAATTTCTGCTTTCAGAAAATCAATATCAGATTTTCAACAATACAATAATAATGGCGGCGCGGACAATATTATTCTTCGCCGTCCTAACTCTCTTGATTGTTTCTTCTGTCGGATTTTCTGAAGAACTTGACGGGTTTTTCAAAGGAATGGATGAGGCTACAAAAATTCCACAGTGTATGCAGAAGATTCTTCCATGTCAACCGTTCTTCAAATTGCCGGAAATTCCGTCGTCGATATGTTGTTTGCCGTTGAAGGAGATGCTGGTCGGCGATCTTCAGTGTTTTTGCTCCTTCTTCAACGATTCGGAAATGTTGAAGGTTTTGAATGCTACCCAGAGCCAAGTGTTGAATCTTCCCAAGGCTTGCGGTGCCGACGATGCTGATATTTCTGCATGTGACAATGGTGAATTTCAATTTCTCATAAATTTAATTAATAATTCTTGAGTTATCACCTTCGTAATCATTCTGTTTTTCCCTCGAATAATTTTCAGACGCCCAGCCACCGACCGGTTCAACGGATGCGCCTCCGTCGCCACCCGCTAAAACTGCCGATGGTAATTAATTTCTGTGTGATTTTGTTTTTTCAAACGGACCCTTTGATTATAATCCCTCTCTCCAAGATTTGTTGATTACAGATTTGTAAATTTTGAATTCAGGTTCTAAAGCTAACAGCTCAAGAAGGAATTATAACAATCCAAGCAACATCATTGGTTATGGCTTTGCAGCTGCTTCATCATTTGTGGCTTTGCTGCTTTCACCATTATTATAAGCACTTTCCTTTTGATTTCAATCCAAATCCTCATTTTTCCCTTCCTTTGAAGCAAACTAACCAAATACTTTTTGTAAGCAAGTCCGAGTTTTTTTATGTAAGAGAAGTTTTCACGTTGATATATCTGATTCATTTTTTGGTTTCTATTGTTCTTTCCTTTGTACACGATTCATAAAATATAATATATTTGATTTTACTATTACATGTTA

mRNA sequence

ATGGCGGCGCGGACAATATTATTCTTCGCCGTCCTAACTCTCTTGATTGTTTCTTCTGTCGGATTTTCTGAAGAACTTGACGGGTTTTTCAAAGGAATGGATGAGGCTACAAAAATTCCACAGTGTATGCAGAAGATTCTTCCATGTCAACCGTTCTTCAAATTGCCGGAAATTCCGTCGTCGATATGTTGTTTGCCGTTGAAGGAGATGCTGGTCGGCGATCTTCAGTGTTTTTGCTCCTTCTTCAACGATTCGGAAATGTTGAAGGTTTTGAATGCTACCCAGAGCCAAGTGTTGAATCTTCCCAAGGCTTGCGGTGCCGACGATGCTGATATTTCTGCATGTGACAATGACGCCCAGCCACCGACCGGTTCAACGGATGCGCCTCCGTCGCCACCCGCTAAAACTGCCGATGGTTCTAAAGCTAACAGCTCAAGAAGGAATTATAACAATCCAAGCAACATCATTGGTTATGGCTTTGCAGCTGCTTCATCATTTGTGGCTTTGCTGCTTTCACCATTATTATAA

Coding sequence (CDS)

ATGGCGGCGCGGACAATATTATTCTTCGCCGTCCTAACTCTCTTGATTGTTTCTTCTGTCGGATTTTCTGAAGAACTTGACGGGTTTTTCAAAGGAATGGATGAGGCTACAAAAATTCCACAGTGTATGCAGAAGATTCTTCCATGTCAACCGTTCTTCAAATTGCCGGAAATTCCGTCGTCGATATGTTGTTTGCCGTTGAAGGAGATGCTGGTCGGCGATCTTCAGTGTTTTTGCTCCTTCTTCAACGATTCGGAAATGTTGAAGGTTTTGAATGCTACCCAGAGCCAAGTGTTGAATCTTCCCAAGGCTTGCGGTGCCGACGATGCTGATATTTCTGCATGTGACAATGACGCCCAGCCACCGACCGGTTCAACGGATGCGCCTCCGTCGCCACCCGCTAAAACTGCCGATGGTTCTAAAGCTAACAGCTCAAGAAGGAATTATAACAATCCAAGCAACATCATTGGTTATGGCTTTGCAGCTGCTTCATCATTTGTGGCTTTGCTGCTTTCACCATTATTATAA

Protein sequence

MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL*

Homology

[Close]

BLAST of Csa1G042900 vs. TrEMBL
Match: A0A0A0LQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042900 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 4.8e-95
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60
           MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS
Sbjct: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60

Query: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120
           SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ
Sbjct: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120

Query: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 176
           PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL
Sbjct: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 175

[Close]

BLAST of Csa1G042900 vs. TrEMBL
Match: M5WVS4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012361mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.4e-22
Identity = 75/184 (40.76%), Postives = 99/184 (53.80%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGM-------DEAT-----KIPQCMQKILP 60
           MA+ +  FF+ L ++I S +GF     GF +G         E T        QC+QK++P
Sbjct: 1   MASISKRFFSFLFVIIFSLLGFV----GFSQGRKLSGLSDQEGTGGGSGASMQCVQKLIP 60

Query: 61  CQPFFKLPEIPSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGAD 120
           CQPF K PE   + CC PLK+M+  D +C CS FN+  ML  LN TQ   L LPKACGA 
Sbjct: 61  CQPFLKAPEKAPAACCSPLKQMVSDDTKCLCSVFNNPGMLSNLNITQDDALKLPKACGA- 120

Query: 121 DADISACDNDAQPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVA 173
           +ADIS C+ DA   T         PA     S ++S    Y  PS+  G GFAA   F+A
Sbjct: 121 NADISICEKDASSSTS--------PASNNSSSSSSSKSAAY-APSHFGGSGFAA--FFMA 168

[Close]

BLAST of Csa1G042900 vs. TrEMBL
Match: A0A078EBH0_BRANA (BnaA08g22710D protein OS=Brassica napus GN=BnaA08g22710D PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.0e-20
Identity = 70/173 (40.46%), Postives = 103/173 (59.54%), Query Frame = 1


Query: 6   ILFFAVLTLL--IVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFK-LPEIPSSI 65
           IL FAV+ +L  I SS   +    G   G  +A  +P C+QK++PCQP+ + +   P + 
Sbjct: 3   ILKFAVIFVLCSISSSNAATTPPSG---GAGDAHSMP-CIQKLMPCQPYLRSVTPPPPAS 62

Query: 66  CCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQPP 125
           CC+PLKE++  D+ C CS FN+ +MLK LN T+   L LPKACGA +AD+S C       
Sbjct: 63  CCMPLKEIVETDVNCLCSVFNNVDMLKSLNLTKENALVLPKACGA-NADVSQCKASTGTT 122

Query: 126 T-----GSTDAPPSPPAKT-ADGSKANSSRRNYNNPSNIIGYGFAAASSFVAL 170
           T     G+T  PP+ PA++ + G  A+S+ +  ++   II  G + AS+FVAL
Sbjct: 123 TPSTSPGTTKTPPAAPAESGSTGGSASSTAKPSDSAPAIIFSGISFASAFVAL 170

[Close]

BLAST of Csa1G042900 vs. TrEMBL
Match: M4EAW0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 65/174 (37.36%), Postives = 96/174 (55.17%), Query Frame = 1


Query: 6   ILFFAVLTLLIVSSVGFSEE-----LDGFFKGMDEATKIPQCMQKILPCQPFF-KLPEIP 65
           ++ FAV  + ++ SV  S+      + G   G  +A  +P C+QK++PCQP+   +   P
Sbjct: 3   VVRFAVAVVFVLFSVSSSKAEPTPAMGGGGGGGGDAHSMP-CIQKLMPCQPYLHSVTPPP 62

Query: 66  SSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDA 125
            + CCLP+KE++  D  C CS FN+ +MLK LN T+   L LPKACGA  ADIS C +  
Sbjct: 63  PASCCLPMKEIVEKDATCLCSVFNNVDMLKSLNLTKENALVLPKACGA-KADISLCKSSN 122

Query: 126 QPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSN----IIGYGFAAASSFVAL 170
              T ST    +PPA +       +S  + + P+N    I   G + AS+F+AL
Sbjct: 123 GTTTPSTGTTTTPPASSTGSGSTGASSSSTDKPTNSAPAINFAGASFASAFMAL 174

[Close]

BLAST of Csa1G042900 vs. TrEMBL
Match: M4DJ85_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 71/175 (40.57%), Postives = 104/175 (59.43%), Query Frame = 1


Query: 6   ILFFAVLTLL--IVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFK-LPEIPSSI 65
           IL FAV+ +L  I SS   +    G   G  +A  +P C+QK++PCQP+ + +   P + 
Sbjct: 3   ILKFAVIFVLCSISSSNAATTPPSG---GAGDAHSMP-CIQKLMPCQPYLRSVTPPPPAS 62

Query: 66  CCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQPP 125
           CC+PLKE++  D+ C CS FN+ +MLK LN T+   L LPKACGA +AD+S C       
Sbjct: 63  CCMPLKEIVETDVNCLCSVFNNVDMLKSLNLTKENALVLPKACGA-NADVSQCKASTGTT 122

Query: 126 T-----GSTDAPPSPPAKTAD--GSKANSSRRNYNNPS-NIIGYGFAAASSFVAL 170
           T     G+T  PP+ PA++    GS +++++ + + P+ N  G  FAAA  FVAL
Sbjct: 123 TPSTSPGTTKTPPASPAESGSTGGSASSTAKPSDSAPAINFSGISFAAA--FVAL 170

[Close]

BLAST of Csa1G042900 vs. TAIR10
Match: AT1G18280.1 (AT1G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-21
Identity = 56/146 (38.36%), Postives = 81/146 (55.48%), Query Frame = 1


Query: 35  EATKIPQCMQKILPCQPFFKLPEIPSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNAT 94
           +A  +P C+QK++PCQP+  L   P + CC+PL E++  D  C C+ FN+ +MLK LN T
Sbjct: 35  DAHSLP-CIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLT 94

Query: 95  QSQVLNLPKACGADDADISACDNDAQPPTGSTD--APPSPPAKT--------ADGSKANS 154
           +   L+LPKACGA  AD+S C   A   + ST    P +PPA +        + G+ A S
Sbjct: 95  KENALDLPKACGA-KADVSLCKTSAGTNSSSTPPATPKTPPASSTSTGTGSGSTGNAAPS 154

Query: 155 SRRNYNNPSNIIGYGFAAASSFVALL 171
           + +  ++   I   G + AS+ VA L
Sbjct: 155 TAKPTSSAPAINFGGLSFASAVVATL 178

[Close]

BLAST of Csa1G042900 vs. TAIR10
Match: AT1G73560.1 (AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 81.6 bits (200), Expect = 5.2e-16
Identity = 49/134 (36.57%), Postives = 68/134 (50.75%), Query Frame = 1


Query: 38  KIPQCMQKILPCQPFF-KLPEIPSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQS 97
           ++  C+QK+LPCQP+   L   P   CC P+KE++  D  C C  FN+ E+LK LN T+ 
Sbjct: 29  QLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKDAPCLCIAFNNPEVLKALNLTKE 88

Query: 98  QVLNLPKACGADDADISACDNDAQPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNII 157
             L LPKACG  + D+S C   A P      +P + P  T   S A++   N        
Sbjct: 89  NALLLPKACGV-NPDVSLCSKIATP------SPIASPGSTNGTSSASTISFN-------- 145

Query: 158 GYGFAAASSFVALL 171
              F+  S+FVA++
Sbjct: 149 --RFSFLSAFVAMI 145

[Close]

BLAST of Csa1G042900 vs. NCBI nr
Match: gi|778657431|ref|XP_011650886.1| (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis sativus])

HSP 1 Score: 355.1 bits (910), Expect = 6.9e-95
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60
           MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS
Sbjct: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60

Query: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120
           SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ
Sbjct: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120

Query: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 176
           PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL
Sbjct: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 175

[Close]

BLAST of Csa1G042900 vs. NCBI nr
Match: gi|659066890|ref|XP_008465923.1| (PREDICTED: lipid transfer-like protein VAS isoform X1 [Cucumis melo])

HSP 1 Score: 279.6 bits (714), Expect = 3.7e-72
Identity = 140/175 (80.00%), Postives = 151/175 (86.29%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60
           MA+RT+LFFA L LL+ SSVGFS++LD FFKGM E+ KIPQCMQKILPCQPF KLPE PS
Sbjct: 1   MASRTMLFFAFLILLMFSSVGFSQDLDAFFKGM-ESGKIPQCMQKILPCQPFIKLPENPS 60

Query: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120
           ++CCLPLKEMLVGD+QC CSFFND +MLK LN TQSQ L LPKACGA D DISAC+ND  
Sbjct: 61  AMCCLPLKEMLVGDVQCLCSFFNDVDMLKALNVTQSQALKLPKACGAADVDISACNNDGP 120

Query: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 176
           PPTGSTDAPP PPAKTAD SKAN SRRN NNPS  IGYGFAAASSFVALLLSPLL
Sbjct: 121 PPTGSTDAPPPPPAKTADDSKANGSRRN-NNPSKGIGYGFAAASSFVALLLSPLL 173

[Close]

BLAST of Csa1G042900 vs. NCBI nr
Match: gi|659066892|ref|XP_008465997.1| (PREDICTED: lipid transfer-like protein VAS isoform X2 [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 4.9e-69
Identity = 138/175 (78.86%), Postives = 148/175 (84.57%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEIPS 60
           MA+RT+LFFA L LL+ SSVGFS++LD FFKGM E+ KIPQCMQKILPCQPF KLPE PS
Sbjct: 1   MASRTMLFFAFLILLMFSSVGFSQDLDAFFKGM-ESGKIPQCMQKILPCQPFIKLPENPS 60

Query: 61  SICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQ 120
           ++CCLPLKEMLVGD+QC CSFFND +MLK LN TQSQ L LPKACGA D DISAC     
Sbjct: 61  AMCCLPLKEMLVGDVQCLCSFFNDVDMLKALNVTQSQALKLPKACGAADVDISAC---GP 120

Query: 121 PPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLSPLL 176
           PPTGSTDAPP PPAKTAD SKAN SRRN NNPS  IGYGFAAASSFVALLLSPLL
Sbjct: 121 PPTGSTDAPPPPPAKTADDSKANGSRRN-NNPSKGIGYGFAAASSFVALLLSPLL 170

[Close]

BLAST of Csa1G042900 vs. NCBI nr
Match: gi|645269728|ref|XP_008240131.1| (PREDICTED: lipid transfer-like protein VAS [Prunus mume])

HSP 1 Score: 117.5 bits (293), Expect = 2.4e-23
Identity = 76/184 (41.30%), Postives = 103/184 (55.98%), Query Frame = 1


Query: 1   MAARTILFFAVLTLLIVSSVGFSEELDGFFKGM-------DEAT-----KIPQCMQKILP 60
           MA+ +  FF+ L ++I S +GF     GF +G         E T        QC+QK++P
Sbjct: 1   MASISKRFFSFLFVIIFSLLGFV----GFSQGRKLSGLSDQEGTGGGSGASMQCVQKLIP 60

Query: 61  CQPFFKLPEIPSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGAD 120
           CQPF K PE   + CC PLK+M+  D +C CS FN+  ML  LN TQ   L LPKACGA 
Sbjct: 61  CQPFLKAPEKAPAACCSPLKQMVSDDTKCLCSVFNNPGMLSNLNITQDDALKLPKACGA- 120

Query: 121 DADISACDNDAQPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVA 173
           +ADIS C+ DA     S+ +P + PA     S ++S    Y  PS+  G GFAA   F+A
Sbjct: 121 NADISICEKDA----SSSTSPAAIPASNNSSSSSSSKSAAY-APSHFCGSGFAA--FFMA 172

[Close]

BLAST of Csa1G042900 vs. NCBI nr
Match: gi|764585080|ref|XP_011464483.1| (PREDICTED: protein YLS3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1


Query: 3   ARTILFFAVLTLLIVSSVGFSE----ELDGFFKGMDEATKIPQCMQKILPCQPFFKLPEI 62
           A   LF  VL L+ + S    E     L GF  G  + T    C++K++PCQP+   PE 
Sbjct: 2   ASKCLFLMVLGLMCLVSSSAVEFPGGGLAGFVTGGGDPTDSMPCVKKLIPCQPYLHAPEK 61

Query: 63  PSSICCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDND 122
               CCLPLK+M+  D +C C  FN+++ LK LN TQ + L LPKACG  +ADIS C  D
Sbjct: 62  VPVSCCLPLKQMVSDDTKCLCGLFNNADTLKKLNLTQDEALKLPKACGV-NADISICKKD 121

Query: 123 AQPPTGSTDAPPSPPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLL 172
           +  P  S   P +PPA      K N++    ++ S+  GYG   A+ F+AL++
Sbjct: 122 STSPPKS---PETPPASNYSSPKKNAA----HSTSHFAGYGI--ATFFMALII 164

The following BLAST results are available for this feature:

BLAST of Csa1G042900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQX5_CUCSA	4.8e-95	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042900 PE=4 SV=1	[more]
M5WVS4_PRUPE	5.4e-22	40.76	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012361mg PE=4 SV=1	[more]
A0A078EBH0_BRANA	1.0e-20	40.46	BnaA08g22710D protein OS=Brassica napus GN=BnaA08g22710D PE=4 SV=1	[more]
M4EAW0_BRARP	1.1e-19	37.36	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
M4DJ85_BRARP	1.1e-19	40.57	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Csa1G042900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G18280.1	7.0e-21	38.36	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]
AT1G73560.1	5.2e-16	36.57	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi...	[more]

BLAST of Csa1G042900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657431\|ref\|XP_011650886.1\|	6.9e-95	100.00	PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis s...	[more]
gi\|659066890\|ref\|XP_008465923.1\|	3.7e-72	80.00	PREDICTED: lipid transfer-like protein VAS isoform X1 [Cucumis melo]	[more]
gi\|659066892\|ref\|XP_008465997.1\|	4.9e-69	78.86	PREDICTED: lipid transfer-like protein VAS isoform X2 [Cucumis melo]	[more]
gi\|645269728\|ref\|XP_008240131.1\|	2.4e-23	41.30	PREDICTED: lipid transfer-like protein VAS [Prunus mume]	[more]
gi\|764585080\|ref\|XP_011464483.1\|	2.0e-22	39.31	PREDICTED: protein YLS3 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU108912	cucumber EST collection version 3.0	transcribed_cluster
CU144321	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G042900.1	Csa1G042900.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108912	CU108912	transcribed_cluster
CU144321	CU144321	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 35..115 score: 2.8
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 40..109 score: 8.08
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 41..110 score: 6.
None	No IPR available	PANTHER	PTHR33044	FAMILY NOT NAMED	coord: 4..172 score: 8.8
None	No IPR available	PANTHER	PTHR33044:SF11	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 4..172 score: 8.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G042900	Cla018447	Watermelon (97103) v1	cuwmB062
Csa1G042900	MELO3C002141	Melon (DHL92) v3.5.1	cumeB027
Csa1G042900	ClCG04G010550	Watermelon (Charleston Gray)	cuwcgB057
Csa1G042900	Lsi02G002430	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G042900	MELO3C002141.2	Melon (DHL92) v3.6.1	cumedB022
Csa1G042900	Cla97C04G077370	Watermelon (97103) v2	cuwmbB054
Csa1G042900	Bhi08G001084	Wax gourd	cuwgoB028
Csa1G042900	CSPI01G07300	Wild cucumber (PI 183967)	cpicuB000
Csa1G042900	CmaCh13G009830	Cucurbita maxima (Rimu)	cmacuB217
Csa1G042900	Cp4.1LG20g01700	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G042900	CsGy1G007150	Cucumber (Gy14) v2	cgybcuB001
Csa1G042900	Carg04854	Silver-seed gourd	carcuB0415

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G042900	Cucumber (Gy14) v1	cgycuB159
Csa1G042900	Cucurbita maxima (Rimu)	cmacuB390
Csa1G042900	Cucurbita moschata (Rifu)	cmocuB202
Csa1G042900	Cucurbita moschata (Rifu)	cmocuB380
Csa1G042900	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G042900	Silver-seed gourd	carcuB0523