Cp4.1LG20g01700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g01700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionLipid transfer protein
LocationCp4.1LG20 : 898949 .. 899865 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACAATCACAACATTTTCGTCAATCCAATAAAAAAGCAGACCTTCACCCTTCCGGAAATAATGGCGTCGTCGAGATTCTTCGCATTCCTCCTCTTGATTTCTTCTCAGATGTTCGTCGGGTTCTCTCAAGATCTCAGCGAATTTCTCAAAGGAACGGAATCGATTCTCGACGGCAAACTTCCGCCGTGTATGAGGCAGATGCTTACGTGTCAACCGTACATCAAGTCGCCGGAAAATCCGCCGCCGGCCTGCTGTACGCCCTTAAAGGAGTTGCTGGATTCCGATCTTCCGTGCCTATGCTCCTTCTTCAACAATGAGAAAATGCTGAAGACTCTGAATGTCTCGCAGAGCCGAGCCTTGGAGCTTCCTAAGAATTGCGGAGCCGAGCTCGATATCTCTGGCTGCAGCGATGGTGAACTTCCCTTTCTCCCCTGATTTAATTCTCTGAATCCGATTTCCATTTCTCTTAAATTTACGCCAAATTTTCAGCCGAGTCGCCAACCGGCTCAACGGAAGGACCTTCTTCATCAACTACTCCTCTTACTCCGACGGCCAACACTTCCGGTTTGAATGGTAAATTTCTGTTGAATTTCCTTTTCTTTGCTTAAATTATTGGTTAATTTAGACTGTTTTTTATTAATAAAAATGTTTGTAAATTCAATTCAATTCAATTCAGATTCTTCTACCGGCGGCGCAACCAGGAACAATCCAACTTACGGATTTGGCCATGGCGTCGCAGCCGCTTCCTCAGTCGTGGCTTTGCTGCTTTCAGCATTCTAGGTCTCCTTGTTCATTTTAATTTATTATTTATCCAATAATTTTTGCAATTTGGTCCCTGTCTAACAAATATTTTCCATCTGGTACACACAAACCATATTTGTAATTCTTTTATTCAATTTTAAATTAATGAAATTGA

mRNA sequence

CTACAATCACAACATTTTCGTCAATCCAATAAAAAAGCAGACCTTCACCCTTCCGGAAATAATGGCGTCGTCGAGATTCTTCGCATTCCTCCTCTTGATTTCTTCTCAGATGTTCGTCGGGTTCTCTCAAGATCTCAGCGAATTTCTCAAAGGAACGGAATCGATTCTCGACGGCAAACTTCCGCCGTGTATGAGGCAGATGCTTACGTGTCAACCGTACATCAAGTCGCCGGAAAATCCGCCGCCGGCCTGCTGTACGCCCTTAAAGGAGTTGCTGGATTCCGATCTTCCGTGCCTATGCTCCTTCTTCAACAATGAGAAAATGCTGAAGACTCTGAATGTCTCGCAGAGCCGAGCCTTGGAGCTTCCTAAGAATTGCGGAGCCGAGCTCGATATCTCTGGCTGCAGCGATGCCGAGTCGCCAACCGGCTCAACGGAAGGACCTTCTTCATCAACTACTCCTCTTACTCCGACGGCCAACACTTCCGGTTTGAATGATTCTTCTACCGGCGGCGCAACCAGGAACAATCCAACTTACGGATTTGGCCATGGCGTCGCAGCCGCTTCCTCAGTCGTGGCTTTGCTGCTTTCAGCATTCTAGGTCTCCTTGTTCATTTTAATTTATTATTTATCCAATAATTTTTGCAATTTGGTCCCTGTCTAACAAATATTTTCCATCTGGTACACACAAACCATATTTGTAATTCTTTTATTCAATTTTAAATTAATGAAATTGA

Coding sequence (CDS)

ATGGCGTCGTCGAGATTCTTCGCATTCCTCCTCTTGATTTCTTCTCAGATGTTCGTCGGGTTCTCTCAAGATCTCAGCGAATTTCTCAAAGGAACGGAATCGATTCTCGACGGCAAACTTCCGCCGTGTATGAGGCAGATGCTTACGTGTCAACCGTACATCAAGTCGCCGGAAAATCCGCCGCCGGCCTGCTGTACGCCCTTAAAGGAGTTGCTGGATTCCGATCTTCCGTGCCTATGCTCCTTCTTCAACAATGAGAAAATGCTGAAGACTCTGAATGTCTCGCAGAGCCGAGCCTTGGAGCTTCCTAAGAATTGCGGAGCCGAGCTCGATATCTCTGGCTGCAGCGATGCCGAGTCGCCAACCGGCTCAACGGAAGGACCTTCTTCATCAACTACTCCTCTTACTCCGACGGCCAACACTTCCGGTTTGAATGATTCTTCTACCGGCGGCGCAACCAGGAACAATCCAACTTACGGATTTGGCCATGGCGTCGCAGCCGCTTCCTCAGTCGTGGCTTTGCTGCTTTCAGCATTCTAG

Protein sequence

MASSRFFAFLLLISSQMFVGFSQDLSEFLKGTESILDGKLPPCMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALELPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGFGHGVAAASSVVALLLSAF
Homology
[Close]
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match: A0A0A0LQX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042900 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.5e-30
Identity = 88/176 (50.00%), Postives = 114/176 (64.77%), Query Frame = 1 

Query: 6   FFAFL--LLISSQMFVGFSQDLSEFLKGTESILDGKLPPCMRQMLTCQPYIKSPENPPPA 65
           FFA L  L++SS   VGFS++L  F KG +     K+P CM+++L CQP+ K PE P   
Sbjct: 8   FFAVLTLLIVSS---VGFSEELDGFFKGMDEAT--KIPQCMQKILPCQPFFKLPEIPSSI 67

Query: 66  CCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALELPKNCGA-ELDISGC-SDAESP 125
           CC PLKE+L  DL C CSFFN+ +MLK LN +QS+ L LPK CGA + DIS C +DA+ P
Sbjct: 68  CCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQPP 127

Query: 126 TGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGFGHGVAAASSVVALLLS 178
           TGST+ P S      P A T+  + +++     NNP+   G+G AAASS VALLLS
Sbjct: 128 TGSTDAPPS------PPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLS 172

[Close]
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match: R0I391_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012497mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-20
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 1 

Query: 37  DGKLPPCMRQMLTCQPYIKSPENPP-PACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVS 96
           D    PC+++++ CQPY+ S   PP P CC PL+E+++ D+ CLCS FNN  MLK+LN++
Sbjct: 36  DAHAMPCIQKLMPCQPYLHSASPPPPPTCCMPLREIVEKDVTCLCSVFNNVDMLKSLNLT 95

Query: 97  QSRALELPKNCGAELDISGCSDAESPTGSTEGPSSST---TPLTPTANTSGLND-----S 156
           +  AL LP  CGA+ D+S C   ++ TG T   SSST   TP TP A+++G        S
Sbjct: 96  KENALVLPTACGAKADVSQC---KTSTGGTTPSSSSTPPATPKTPPASSTGSGSTGDSAS 155

Query: 157 STGGATRNNPTYGFGHGVAAASSVVALL 176
           ST  +T + P   FG G++ AS+VVA L
Sbjct: 156 STAKSTSSAPAINFG-GLSFASAVVATL 179

[Close]
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match: V4MT64_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008878mg PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.7e-20
Identity = 64/145 (44.14%), Postives = 90/145 (62.07%), Query Frame = 1 

Query: 37  DGKLPPCMRQMLTCQPYIKSPENPP-PACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVS 96
           D    PC+++++ CQPY+ S   PP P CC PLKE++++D+ CLCS FNN  MLK+LN++
Sbjct: 38  DAHSMPCIQKLMPCQPYLHSATPPPPPTCCMPLKEIVETDVTCLCSVFNNVDMLKSLNLT 97

Query: 97  QSRALELPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTSGLN------DSST 156
           +  AL LPK CGA  D+S C    S TG+T   +   TP TP A+++G        +SST
Sbjct: 98  KENALVLPKACGANADVSQCK--ASSTGTTSPMTPPATPKTPPASSTGSGSTGDSANSST 157

Query: 157 GGATRNNPTYGFGHGVAAASSVVAL 175
              T + PT  F  G++ AS+ VAL
Sbjct: 158 AKPTNSAPTINFA-GLSFASAFVAL 179

[Close]
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match: A0A0D3DWP9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-19
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1 

Query: 37  DGKLPPCMRQMLTCQPYIKSP-ENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVS 96
           D +  PC+++++ CQP++ S    PPP+CC P+K ++ +D  CLCS FNN  MLK+LN++
Sbjct: 34  DAQAMPCIQKLMPCQPFLHSVIPPPPPSCCLPMKAIVANDATCLCSVFNNVDMLKSLNLT 93

Query: 97  QSRALELPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTAN-----TSGLNDSSTG 156
           +  AL+LPK CGA  DIS C  A    G+T   +SS TP TP A+     ++G + SST 
Sbjct: 94  KDNALDLPKACGANPDISLCK-ASPAGGTTTNSTSSATPKTPPASSTGSGSTGASASSTS 153

Query: 157 GATRNNPTYGFGHGVAAASSVVALLLSAF 180
             T + P   F  G++ AS++VAL  + F
Sbjct: 154 TPTSSAPAINFA-GLSFASTIVALAATFF 180

[Close]
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match: A0A087HPD8_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G200500 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.4e-19
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 1 

Query: 42  PCMRQMLTCQPYIKSPENPP-PACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRAL 101
           PC+++++ CQPY+ S   PP P CC PL+E++++D+ CLC+ FNN  MLK+LN+++  AL
Sbjct: 41  PCIQKLMPCQPYLHSATPPPPPTCCMPLREIVENDVTCLCAVFNNVDMLKSLNLTKDNAL 100

Query: 102 ELPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTA-NTSGLNDSSTGGATRNNPT 159
            LPK CGA  D+S C  A S T     PSS+T P TPT    S   + +TGG+T ++ T
Sbjct: 101 LLPKACGANADVSKCRKASSGT----TPSSTTAPATPTTPPASSTGNGTTGGSTGDSAT 155

[Close]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match: AT1G18280.1 (AT1G18280.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 97.8 bits (242), Expect = 7.1e-21
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 1 

Query: 42  PCMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALE 101
           PC+++++ CQPY+     PP  CC PL E++  D  CLC+ FNN  MLK+LN+++  AL+
Sbjct: 40  PCIQKLMPCQPYLHLATPPPATCCMPLNEIVAKDATCLCAVFNNVDMLKSLNLTKENALD 99

Query: 102 LPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTS-GLNDSSTGGA-------T 161
           LPK CGA+ D+S C  +     S+  P++  TP  P ++TS G    STG A       T
Sbjct: 100 LPKACGAKADVSLCKTSAGTNSSSTPPATPKTP--PASSTSTGTGSGSTGNAAPSTAKPT 159

Query: 162 RNNPTYGFGHGVAAASSVVALL 176
            + P   FG G++ AS+VVA L
Sbjct: 160 SSAPAINFG-GLSFASAVVATL 178

[Close]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match: AT1G73560.1 (AT1G73560.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 39  KLPPCMRQMLTCQPYIKSPENPPP-ACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQS 98
           +L  C++++L CQPYI S   PPP +CC P+KE+++ D PCLC  FNN ++LK LN+++ 
Sbjct: 29  QLTACLQKLLPCQPYIHSLNPPPPPSCCGPMKEIVEKDAPCLCIAFNNPEVLKALNLTKE 88

Query: 99  RALELPKNCGAELDISGCSDAESPT-----GSTEGPSSSTT 134
            AL LPK CG   D+S CS   +P+     GST G SS++T
Sbjct: 89  NALLLPKACGVNPDVSLCSKIATPSPIASPGSTNGTSSAST 129

[Close]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match: AT1G73550.1 (AT1G73550.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1 

Query: 43  CMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALEL 102
           C+ +++ CQPYI     PPP CC P+K++ + D+ CLC+ F +  +L+ L +++  A+++
Sbjct: 35  CVAKLMPCQPYIHLSIPPPPLCCNPMKQIAEKDVSCLCTAFKHPDLLRFLALTKENAIKI 94

Query: 103 PKNCGAELDISGC------SDAESPTGSTEGPSSSTTPLTPTANT 142
             +CG   D S C      S A  P  +T G S ST   T  A T
Sbjct: 95  LDSCGINHDPSVCNKTNPSSPAALPEAATSGNSFSTKKNTALAIT 139

[Close]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match: AT1G70250.1 (AT1G70250.1 receptor serine/threonine kinase, putative)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-08
Identity = 28/101 (27.72%), Postives = 51/101 (50.50%), Query Frame = 1 

Query: 43  CMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALEL 102
           C+ +++ C  ++ +   P   CC  +KE ++ D  CLC+ +N   +L   N++  +AL L
Sbjct: 23  CVSKIVPCFRFLNTTTKPSTDCCNSIKEAMEKDFSCLCTIYNTPGLLAQFNITTDQALGL 82

Query: 103 PKNCGAELDISGCSDAESPTGSTE---GPSSSTTPLTPTAN 141
              CG   D+S CS + +P    +    PS+   P  P ++
Sbjct: 83  NLRCGVNTDLSACSGSGAPPPPPDLFPPPSAQMLPPPPASS 123

[Close]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match: AT1G62790.1 (AT1G62790.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.4e-07
Identity = 36/137 (26.28%), Postives = 65/137 (47.45%), Query Frame = 1 

Query: 43  CMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALEL 102
           C+ +++ C   + +   P   CC  +KE ++ +L CLC+ + +  +L   NV+  +AL L
Sbjct: 29  CVSKLVPCFNDLNTTTTPVKECCDSIKEAVEKELTCLCTIYTSPGLLAQFNVTTEKALGL 88

Query: 103 PKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGFG 162
            + C    D+S C+   +P+     P +S  P  P  NT    D+  G     N   G+G
Sbjct: 89  SRRCNVTTDLSACTAKGAPS-----PKASLPPPAPAGNTK--KDAGAG-----NKLAGYG 148

Query: 163 HGVAAASSVVALLLSAF 180
                 + +++L+ S F
Sbjct: 149 ----VTTVILSLISSIF 149

[Close]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match: gi|659066890|ref|XP_008465923.1| (PREDICTED: lipid transfer-like protein VAS isoform X1 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 3.3e-36
Identity = 99/175 (56.57%), Postives = 121/175 (69.14%), Query Frame = 1 

Query: 6   FFAFLLLISSQMFVGFSQDLSEFLKGTESILDGKLPPCMRQMLTCQPYIKSPENPPPACC 65
           FFAFL+L+     VGFSQDL  F KG ES   GK+P CM+++L CQP+IK PENP   CC
Sbjct: 8   FFAFLILLMFSS-VGFSQDLDAFFKGMES---GKIPQCMQKILPCQPFIKLPENPSAMCC 67

Query: 66  TPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALELPKNCG-AELDISGC-SDAESPTG 125
            PLKE+L  D+ CLCSFFN+  MLK LNV+QS+AL+LPK CG A++DIS C +D   PTG
Sbjct: 68  LPLKEMLVGDVQCLCSFFNDVDMLKALNVTQSQALKLPKACGAADVDISACNNDGPPPTG 127

Query: 126 STEGPSSSTTPLTPTANTSGLNDSSTGGATR-NNPTYGFGHGVAAASSVVALLLS 178
           ST+ P        P A T+  +DS   G+ R NNP+ G G+G AAASS VALLLS
Sbjct: 128 STDAPP------PPPAKTA--DDSKANGSRRNNNPSKGIGYGFAAASSFVALLLS 170

[Close]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match: gi|659066892|ref|XP_008465997.1| (PREDICTED: lipid transfer-like protein VAS isoform X2 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 2.1e-35
Identity = 98/174 (56.32%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 6   FFAFLLLISSQMFVGFSQDLSEFLKGTESILDGKLPPCMRQMLTCQPYIKSPENPPPACC 65
           FFAFL+L+     VGFSQDL  F KG ES   GK+P CM+++L CQP+IK PENP   CC
Sbjct: 8   FFAFLILLMFSS-VGFSQDLDAFFKGMES---GKIPQCMQKILPCQPFIKLPENPSAMCC 67

Query: 66  TPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALELPKNCG-AELDISGCSDAESPTGS 125
            PLKE+L  D+ CLCSFFN+  MLK LNV+QS+AL+LPK CG A++DIS C     PTGS
Sbjct: 68  LPLKEMLVGDVQCLCSFFNDVDMLKALNVTQSQALKLPKACGAADVDISAC--GPPPTGS 127

Query: 126 TEGPSSSTTPLTPTANTSGLNDSSTGGATR-NNPTYGFGHGVAAASSVVALLLS 178
           T+ P        P A T+  +DS   G+ R NNP+ G G+G AAASS VALLLS
Sbjct: 128 TDAPP------PPPAKTA--DDSKANGSRRNNNPSKGIGYGFAAASSFVALLLS 167

[Close]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match: gi|778657431|ref|XP_011650886.1| (PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 7.9e-30
Identity = 88/176 (50.00%), Postives = 114/176 (64.77%), Query Frame = 1 

Query: 6   FFAFL--LLISSQMFVGFSQDLSEFLKGTESILDGKLPPCMRQMLTCQPYIKSPENPPPA 65
           FFA L  L++SS   VGFS++L  F KG +     K+P CM+++L CQP+ K PE P   
Sbjct: 8   FFAVLTLLIVSS---VGFSEELDGFFKGMDEAT--KIPQCMQKILPCQPFFKLPEIPSSI 67

Query: 66  CCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALELPKNCGA-ELDISGC-SDAESP 125
           CC PLKE+L  DL C CSFFN+ +MLK LN +QS+ L LPK CGA + DIS C +DA+ P
Sbjct: 68  CCLPLKEMLVGDLQCFCSFFNDSEMLKVLNATQSQVLNLPKACGADDADISACDNDAQPP 127

Query: 126 TGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGFGHGVAAASSVVALLLS 178
           TGST+ P S      P A T+  + +++     NNP+   G+G AAASS VALLLS
Sbjct: 128 TGSTDAPPS------PPAKTADGSKANSSRRNYNNPSNIIGYGFAAASSFVALLLS 172

[Close]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match: gi|729340866|ref|XP_010540032.1| (PREDICTED: protein YLS3-like [Tarenaya hassleriana])

HSP 1 Score: 115.9 bits (289), Expect = 7.1e-23
Identity = 60/129 (46.51%), Postives = 88/129 (68.22%), Query Frame = 1 

Query: 43  CMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALEL 102
           C+++++ CQPYI +P NPP  CC PLKE++D+D+ CLCS FNN  ML++ N+++S AL+L
Sbjct: 39  CIKRLIPCQPYIHAPVNPPATCCVPLKEIIDNDVTCLCSVFNNPAMLRSQNLTKSNALDL 98

Query: 103 PKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGFG 162
           PK CGA  D+S C+ + +P   T  P + T P+TP A+T+G   SSTGG+T        G
Sbjct: 99  PKACGANADVSRCNSSATP--PTASPETPTNPMTPPASTNG--SSSTGGSTAG------G 157

Query: 163 HGVAAASSV 172
              AAA+++
Sbjct: 159 SSSAAATTI 157

[Close]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match: gi|729333473|ref|XP_010537503.1| (PREDICTED: protein YLS3 [Tarenaya hassleriana])

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1 

Query: 42  PCMRQMLTCQPYIKSPENPPPACCTPLKELLDSDLPCLCSFFNNEKMLKTLNVSQSRALE 101
           PC+++++ CQPYI S   PPP CC PLKE+LD+D+ CLCS FNN  ML++LN+++S AL+
Sbjct: 38  PCIQRLMPCQPYIHSQNPPPPTCCVPLKEILDNDVTCLCSVFNNPDMLRSLNLTKSNALD 97

Query: 102 LPKNCGAELDISGCSDAESPTGSTEGPSSSTTPLTPTANTSGLNDSSTGGATRNNPTYGF 161
           LPK CGA+ D+S C +A   T     PS+ T P+TP A T+G   SS  G+  +      
Sbjct: 98  LPKACGADADVSRCKNA--ATSPIASPSTPTAPVTPPATTNG--SSSNPGSPSSQAAAAA 157

Query: 162 GHGVAAASSVVALLLSAF 180
                  + V AL+ + F
Sbjct: 158 TVSFVGLNFVSALVATFF 171

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g01700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g01700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQX5_CUCSA5.5e-3050.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042900 PE=4 SV=1[more]
R0I391_9BRAS5.1e-2044.59Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012497mg PE=4 SV=1[more]
V4MT64_EUTSA6.7e-2044.14Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10008878mg PE=4 SV=1[more]
A0A0D3DWP9_BRAOL5.7e-1942.28Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A087HPD8_ARAAL7.4e-1946.22Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G200500 PE=4 SV=1[more]
BLAST of Cp4.1LG20g01700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G18280.17.1e-2141.55 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT1G73560.11.3e-1947.52 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT1G73550.11.7e-1135.24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
AT1G70250.12.4e-0827.72 receptor serine/threonine kinase, putative[more]
AT1G62790.13.4e-0726.28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumi... [more]
BLAST of Cp4.1LG20g01700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659066890|ref|XP_008465923.1|3.3e-3656.57PREDICTED: lipid transfer-like protein VAS isoform X1 [Cucumis melo][more]
gi|659066892|ref|XP_008465997.1|2.1e-3556.32PREDICTED: lipid transfer-like protein VAS isoform X2 [Cucumis melo][more]
gi|778657431|ref|XP_011650886.1|7.9e-3050.00PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Cucumis s... [more]
gi|729340866|ref|XP_010540032.1|7.1e-2346.51PREDICTED: protein YLS3-like [Tarenaya hassleriana][more]
gi|729333473|ref|XP_010537503.1|3.9e-2144.20PREDICTED: protein YLS3 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g01700.1Cp4.1LG20g01700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 41..115
score: 3.4
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 43..115
score: 3.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 43..113
score: 3.21
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 44..113
score: 5.1
NoneNo IPR availablePANTHERPTHR33044FAMILY NOT NAMEDcoord: 1..26
score: 2.6E-24coord: 42..143
score: 2.6
NoneNo IPR availablePANTHERPTHR33044:SF11BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEINcoord: 1..26
score: 2.6E-24coord: 42..143
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g01700CmaCh13G009830Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g01700Cla018447Watermelon (97103) v1cpewmB523
Cp4.1LG20g01700Csa1G042900Cucumber (Chinese Long) v2cpecuB505
Cp4.1LG20g01700MELO3C002141Melon (DHL92) v3.5.1cpemeB478
Cp4.1LG20g01700ClCG04G010550Watermelon (Charleston Gray)cpewcgB471
Cp4.1LG20g01700CSPI01G07300Wild cucumber (PI 183967)cpecpiB505
Cp4.1LG20g01700Lsi02G002430Bottle gourd (USVL1VR-Ls)cpelsiB418
Cp4.1LG20g01700MELO3C002141.2Melon (DHL92) v3.6.1cpemedB560
Cp4.1LG20g01700CsaV3_1G007240Cucumber (Chinese Long) v3cpecucB0623
Cp4.1LG20g01700Bhi08G001084Wax gourdcpewgoB0635
Cp4.1LG20g01700CsGy1G007150Cucumber (Gy14) v2cgybcpeB069
Cp4.1LG20g01700Carg04854Silver-seed gourdcarcpeB0544
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g01700Silver-seed gourdcarcpeB0696
Cp4.1LG20g01700Cucurbita pepo (Zucchini)cpecpeB049
Cp4.1LG20g01700Cucumber (Gy14) v1cgycpeB0308
Cp4.1LG20g01700Cucurbita maxima (Rimu)cmacpeB439
Cp4.1LG20g01700Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g01700Cucurbita moschata (Rifu)cmocpeB404