Csa1G042810 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042810
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4514500 .. 4514739 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

mRNA sequence

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Coding sequence (CDS)

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Protein sequence

MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVENFVASDFPDFGGPLYIEAA*
Homology
[Close]
BLAST of Csa1G042810 vs. TrEMBL
Match: A0A0A0LT39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

[Close]
BLAST of Csa1G042810 vs. NCBI nr
Match: gi|700209078|gb|KGN64174.1| (hypothetical protein Csa_1G042810 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

The following BLAST results are available for this feature:
BLAST of Csa1G042810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT39_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1[more]
BLAST of Csa1G042810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209078|gb|KGN64174.1|1.6e-38100.00hypothetical protein Csa_1G042810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008168 methyltransferase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103110cucumber EST collection version 3.0transcribed_cluster
CU104250cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042810.1Csa1G042810.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104250CU104250transcribed_cluster
CU103110CU103110transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042810CSPI01G07210Wild cucumber (PI 183967)cpicuB000
Csa1G042810CsGy1G007050Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042810Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042810Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042810Cucumber (Gy14) v2cgybcuB004
Csa1G042810Melon (DHL92) v3.6.1cumedB022
Csa1G042810Melon (DHL92) v3.6.1cumedB048
Csa1G042810Silver-seed gourdcarcuB0415
Csa1G042810Silver-seed gourdcarcuB0523
Csa1G042810Silver-seed gourdcarcuB0623
Csa1G042810Silver-seed gourdcarcuB0802
Csa1G042810Watermelon (97103) v2cuwmbB054
Csa1G042810Watermelon (97103) v2cuwmbB080
Csa1G042810Wax gourdcuwgoB028
Csa1G042810Wax gourdcuwgoB093
Csa1G042810Cucumber (Chinese Long) v2cucuB000
Csa1G042810Cucumber (Gy14) v1cgycuB139
Csa1G042810Cucumber (Gy14) v1cgycuB159
Csa1G042810Cucurbita maxima (Rimu)cmacuB056
Csa1G042810Cucurbita maxima (Rimu)cmacuB088
Csa1G042810Cucurbita maxima (Rimu)cmacuB217
Csa1G042810Cucurbita maxima (Rimu)cmacuB390
Csa1G042810Cucurbita moschata (Rifu)cmocuB046
Csa1G042810Cucurbita moschata (Rifu)cmocuB077
Csa1G042810Cucurbita moschata (Rifu)cmocuB202
Csa1G042810Cucurbita moschata (Rifu)cmocuB380
Csa1G042810Melon (DHL92) v3.5.1cumeB027
Csa1G042810Melon (DHL92) v3.5.1cumeB056
Csa1G042810Watermelon (Charleston Gray)cuwcgB057
Csa1G042810Watermelon (Charleston Gray)cuwcgB083
Csa1G042810Watermelon (97103) v1cuwmB062
Csa1G042810Watermelon (97103) v1cuwmB096
Csa1G042810Cucurbita pepo (Zucchini)cpecuB029
Csa1G042810Cucurbita pepo (Zucchini)cpecuB369
Csa1G042810Cucurbita pepo (Zucchini)cpecuB505
Csa1G042810Cucurbita pepo (Zucchini)cpecuB655