CSPI01G07210 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G07210
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 4543139 .. 4543378 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

mRNA sequence

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Coding sequence (CDS)

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG
Homology
[Close]
BLAST of CSPI01G07210 vs. TrEMBL
Match: A0A0A0LT39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

[Close]
BLAST of CSPI01G07210 vs. NCBI nr
Match: gi|700209078|gb|KGN64174.1| (hypothetical protein Csa_1G042810 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

The following BLAST results are available for this feature:
BLAST of CSPI01G07210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G07210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT39_CUCSA1.9e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1[more]
BLAST of CSPI01G07210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G07210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209078|gb|KGN64174.1|2.7e-38100.00hypothetical protein Csa_1G042810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G07210.1CSPI01G07210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G07210Csa1G042810Cucumber (Chinese Long) v2cpicuB000
CSPI01G07210CsaV3_1G007150Cucumber (Chinese Long) v3cpicucB001
CSPI01G07210CsGy1G007050Cucumber (Gy14) v2cgybcpiB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G07210Cucurbita moschata (Rifu)cmocpiB049
CSPI01G07210Cucurbita moschata (Rifu)cmocpiB080
CSPI01G07210Cucurbita moschata (Rifu)cmocpiB204
CSPI01G07210Cucurbita moschata (Rifu)cmocpiB383
CSPI01G07210Cucumber (Chinese Long) v2cpicuB003
CSPI01G07210Melon (DHL92) v3.5.1cpimeB024
CSPI01G07210Melon (DHL92) v3.5.1cpimeB058
CSPI01G07210Watermelon (Charleston Gray)cpiwcgB059
CSPI01G07210Watermelon (Charleston Gray)cpiwcgB085
CSPI01G07210Watermelon (97103) v1cpiwmB066
CSPI01G07210Watermelon (97103) v1cpiwmB101
CSPI01G07210Cucurbita pepo (Zucchini)cpecpiB369
CSPI01G07210Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G07210Cucurbita pepo (Zucchini)cpecpiB658
CSPI01G07210Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G07210Bottle gourd (USVL1VR-Ls)cpilsiB072
CSPI01G07210Melon (DHL92) v3.6.1cpimedB023
CSPI01G07210Melon (DHL92) v3.6.1cpimedB052
CSPI01G07210Cucumber (Gy14) v2cgybcpiB003
CSPI01G07210Silver-seed gourdcarcpiB0418
CSPI01G07210Silver-seed gourdcarcpiB0531
CSPI01G07210Silver-seed gourdcarcpiB0629
CSPI01G07210Cucumber (Chinese Long) v3cpicucB002
CSPI01G07210Watermelon (97103) v2cpiwmbB055
CSPI01G07210Watermelon (97103) v2cpiwmbB081
CSPI01G07210Wax gourdcpiwgoB028
CSPI01G07210Wax gourdcpiwgoB096
CSPI01G07210Cucurbita maxima (Rimu)cmacpiB394
CSPI01G07210Wild cucumber (PI 183967)cpicpiB001
CSPI01G07210Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G07210Cucumber (Gy14) v1cgycpiB139
CSPI01G07210Cucumber (Gy14) v1cgycpiB160
CSPI01G07210Cucurbita maxima (Rimu)cmacpiB057
CSPI01G07210Cucurbita maxima (Rimu)cmacpiB087
CSPI01G07210Cucurbita maxima (Rimu)cmacpiB218