CsaV3_1G007150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G007150
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4534185 .. 4534424 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

mRNA sequence

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Coding sequence (CDS)

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Protein sequence

MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVENFVASDFPDFGGPLYIEAA
Homology
[Close]
BLAST of CsaV3_1G007150 vs. NCBI nr
Match: KGN64174.1 (hypothetical protein Csa_1G042810 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

[Close]
BLAST of CsaV3_1G007150 vs. TrEMBL
Match: tr|A0A0A0LT39|A0A0A0LT39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042810 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.4e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

The following BLAST results are available for this feature:
BLAST of CsaV3_1G007150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64174.15.2e-38100.00hypothetical protein Csa_1G042810 [Cucumis sativus][more]
BLAST of CsaV3_1G007150 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G007150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G007150 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT39|A0A0A0LT39_CUCSA3.4e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G007150.1CsaV3_1G007150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G007150CSPI01G07210Wild cucumber (PI 183967)cpicucB001
CsaV3_1G007150CsGy1G007050Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G007150Watermelon (97103) v2cucwmbB054
CsaV3_1G007150Watermelon (97103) v2cucwmbB078
CsaV3_1G007150Wax gourdcucwgoB031
CsaV3_1G007150Wax gourdcucwgoB101
CsaV3_1G007150Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G007150Silver-seed gourdcarcucB0418
CsaV3_1G007150Silver-seed gourdcarcucB0529
CsaV3_1G007150Silver-seed gourdcarcucB0630
CsaV3_1G007150Silver-seed gourdcarcucB0825
CsaV3_1G007150Cucumber (Gy14) v2cgybcucB004
CsaV3_1G007150Cucumber (Gy14) v1cgycucB145
CsaV3_1G007150Cucumber (Gy14) v1cgycucB163
CsaV3_1G007150Cucurbita maxima (Rimu)cmacucB0065
CsaV3_1G007150Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G007150Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G007150Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G007150Cucurbita moschata (Rifu)cmocucB0052
CsaV3_1G007150Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G007150Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G007150Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G007150Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G007150Cucurbita pepo (Zucchini)cpecucB0449
CsaV3_1G007150Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G007150Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G007150Wild cucumber (PI 183967)cpicucB004
CsaV3_1G007150Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G007150Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G007150Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G007150Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G007150Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G007150Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G007150Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G007150Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G007150Watermelon (97103) v1cucwmB070
CsaV3_1G007150Watermelon (97103) v1cucwmB107