Csa1G042810.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa1G042810.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4514500 .. 4514739 (+)
Sequence length240
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

mRNA sequence

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Coding sequence (CDS)

ATGAAGAGGAGGAGGAGGAATTTAAGCAAGGTTAAGCCTATGAACCCTCAACGGCGAGGCGGGATCTGGAAAAGCTCCTGGATCTTCGGGTGTTTAGTCTTCCTCTTTGCTGCATTCCACGGGTGCAGCAAAACGTTGAAGGAACTGACAGCGCTTTTCTCCCTCTTTGTTGACGTCGAAAATTTTGTTGCGAGCGATTTCCCCGACTTTGGAGGACCTCTTTATATAGAAGCTGCTTAG

Protein sequence

MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVENFVASDFPDFGGPLYIEAA*
Homology
[Close]
BLAST of Csa1G042810.1 vs. TrEMBL
Match: A0A0A0LT39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

[Close]
BLAST of Csa1G042810.1 vs. NCBI nr
Match: gi|700209078|gb|KGN64174.1| (hypothetical protein Csa_1G042810 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

Query: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60
          MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE
Sbjct: 1  MKRRRRNLSKVKPMNPQRRGGIWKSSWIFGCLVFLFAAFHGCSKTLKELTALFSLFVDVE 60

Query: 61 NFVASDFPDFGGPLYIEAA 80
          NFVASDFPDFGGPLYIEAA
Sbjct: 61 NFVASDFPDFGGPLYIEAA 79

The following BLAST results are available for this feature:
BLAST of Csa1G042810.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT39_CUCSA1.1e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042810 PE=4 SV=1[more]
BLAST of Csa1G042810.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209078|gb|KGN64174.1|1.6e-38100.00hypothetical protein Csa_1G042810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa1G042810Csa1G042810gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa1G042810.1Csa1G042810.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa1G042810.1.cds1Csa1G042810.1.cds1CDS